Wall clock time and date at job start Mon Mar 30 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50691 * 109.46965 * 2 1 4 4 N 1.30905 * 125.31409 * 269.99568 * 3 2 1 5 5 C 1.33405 * 109.87359 * 180.02562 * 4 3 2 6 6 C 1.50694 * 126.27239 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47382 * 269.99973 * 6 5 4 8 8 C 1.50694 * 109.47382 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99979 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00169 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99947 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99991 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46668 * 90.00194 * 12 10 8 14 14 H 1.48502 * 109.46948 * 209.99701 * 12 10 8 15 15 H 1.48494 * 109.47244 * 330.00351 * 12 10 8 16 16 C 1.37998 * 107.45594 * 0.02562 * 5 4 3 17 17 C 1.40975 * 133.70778 * 179.97438 * 16 5 4 18 18 C 1.35876 * 119.17843 * 180.02562 * 17 16 5 19 19 C 1.40813 * 119.76744 * 359.95903 * 18 17 16 20 20 C 1.34665 * 120.62249 * 0.04859 * 19 18 17 21 21 N 1.35038 * 125.31665 * 89.99706 * 3 2 1 22 22 H 1.09001 * 109.46832 * 60.00492 * 1 2 3 23 23 H 1.09000 * 109.46824 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47061 * 300.00168 * 1 2 3 25 25 H 1.08994 * 109.47061 * 239.99832 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99508 * 2 1 3 27 27 H 1.09000 * 109.47084 * 29.99840 * 6 5 4 28 28 H 1.09005 * 109.47227 * 150.00165 * 6 5 4 29 29 H 1.09000 * 109.46903 * 299.99978 * 7 6 5 30 30 H 1.09005 * 109.46783 * 59.99920 * 7 6 5 31 31 H 0.96997 * 120.00357 * 180.02562 * 11 10 8 32 32 H 1.08007 * 120.40921 * 359.75890 * 17 16 5 33 33 H 1.07992 * 120.11394 * 179.97438 * 18 17 16 34 34 H 1.08005 * 119.68937 * 180.02562 * 19 18 17 35 35 H 1.08004 * 119.72389 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2847 2.1342 -1.0682 5 6 2.7138 3.3463 -0.7130 6 6 3.1088 4.4613 -1.6467 7 6 4.6023 4.3572 -1.9624 8 6 4.9974 5.4725 -2.8956 9 1 4.2573 6.1841 -3.2305 10 6 6.3036 5.5838 -3.3228 11 7 7.2046 4.7163 -2.9162 12 14 6.7932 6.9659 -4.4802 13 1 7.2127 8.1497 -3.6878 14 1 7.9210 6.5184 -5.3364 15 1 5.6352 7.3283 -5.3362 16 6 2.7307 3.3918 0.6661 17 6 3.0828 4.3839 1.6038 18 6 2.9858 4.1059 2.9303 19 6 2.5366 2.8384 3.3479 20 6 2.2026 1.8971 2.4447 21 7 2.2925 2.1568 1.1019 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.5358 4.3817 -2.5705 28 1 2.9035 5.4215 -1.1734 29 1 5.1753 4.4368 -1.0386 30 1 4.8075 3.3970 -2.4357 31 1 8.1236 4.7948 -3.2164 32 1 3.4296 5.3514 1.2719 33 1 3.2519 4.8546 3.6616 34 1 2.4595 2.6190 4.4026 35 1 1.8602 0.9296 2.7812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259976326.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:51 Heat of formation + Delta-G solvation = 42.009133 kcal Electronic energy + Delta-G solvation = -16899.806632 eV Core-core repulsion = 14283.259894 eV Total energy + Delta-G solvation = -2616.546737 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.74717 -38.41464 -36.36031 -34.99576 -33.73201 -32.71244 -31.53218 -28.87204 -26.80406 -24.93987 -24.47093 -23.66273 -21.77343 -21.27372 -18.58870 -18.08693 -17.56244 -16.93376 -16.49950 -16.45554 -15.76228 -15.40749 -14.91251 -14.65413 -14.44136 -14.10828 -13.60193 -13.30992 -13.08479 -12.84422 -12.82388 -12.51452 -12.38569 -12.29687 -12.07115 -11.89388 -11.79053 -11.33595 -11.25064 -11.02297 -10.56724 -10.16707 -8.26907 -8.13714 -6.32692 -0.04870 0.34458 1.39908 1.43034 1.54428 1.72013 2.06009 2.41829 2.53787 3.12796 3.36859 3.58858 3.79729 3.96644 4.03175 4.22015 4.27628 4.33314 4.35791 4.61002 4.68492 4.82125 4.90184 4.94020 4.96470 5.07252 5.09502 5.22829 5.30141 5.38628 5.47118 5.62714 5.67850 5.75480 5.81680 6.21440 6.38209 6.83465 7.03117 7.36735 8.92881 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027825 B = 0.005560 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.035483 B = 5034.590248 C = 5677.899901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C 0.153 3.847 4 N -0.492 5.492 5 C -0.012 4.012 6 C -0.013 4.013 7 C 0.047 3.953 8 C -0.543 4.543 9 H 0.065 0.935 10 C -0.002 4.002 11 N -0.937 5.937 12 Si 0.972 3.028 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.262 1.262 16 C -0.017 4.017 17 C -0.098 4.098 18 C -0.118 4.118 19 C -0.129 4.129 20 C 0.030 3.970 21 N -0.369 5.369 22 H 0.040 0.960 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.106 0.894 27 H 0.054 0.946 28 H 0.073 0.927 29 H -0.013 1.013 30 H -0.025 1.025 31 H 0.264 0.736 32 H 0.139 0.861 33 H 0.167 0.833 34 H 0.192 0.808 35 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.713 -7.171 15.916 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 C -0.103 4.103 4 N -0.207 5.207 5 C -0.147 4.147 6 C -0.051 4.051 7 C 0.010 3.990 8 C -0.581 4.581 9 H 0.084 0.916 10 C -0.199 4.199 11 N -0.577 5.577 12 Si 0.796 3.204 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.186 1.186 16 C -0.125 4.125 17 C -0.118 4.118 18 C -0.138 4.138 19 C -0.149 4.149 20 C -0.088 4.088 21 N -0.040 5.040 22 H 0.059 0.941 23 H 0.112 0.888 24 H 0.075 0.925 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.006 0.994 30 H -0.006 1.006 31 H 0.072 0.928 32 H 0.157 0.843 33 H 0.184 0.816 34 H 0.209 0.791 35 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -12.701 -7.648 15.093 21.157 hybrid contribution 0.880 0.934 -0.264 1.310 sum -11.821 -6.714 14.829 20.118 Atomic orbital electron populations 1.21702 0.92684 1.03534 1.01636 1.20109 0.97268 0.84322 1.05107 1.23914 1.08695 0.98479 0.79167 1.69749 1.16595 1.04453 1.29886 1.21287 1.07232 0.94995 0.91153 1.19750 0.96825 0.92945 0.95592 1.18799 0.90810 0.94858 0.94568 1.21674 0.95021 1.12803 1.28569 0.91636 1.26068 0.96501 0.99094 0.98247 1.70140 1.03064 1.38039 1.46453 0.85343 0.78002 0.78600 0.78458 1.19216 1.20756 1.18609 1.19588 1.09529 0.88771 0.94652 1.20758 1.00097 0.98067 0.92900 1.21476 0.99079 0.98554 0.94699 1.21364 0.99646 0.92238 1.01648 1.22418 1.03879 1.03556 0.78959 1.42879 1.42408 1.11426 1.07315 0.94120 0.88781 0.92475 0.89228 0.87541 0.92697 0.90837 0.99433 1.00628 0.92756 0.84319 0.81597 0.79051 0.78228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.90 71.99 0.71 -1.81 16 2 C -0.03 -0.66 6.38 29.85 0.19 -0.47 16 3 C 0.15 5.28 7.21 138.01 1.00 6.27 16 4 N -0.49 -21.99 11.19 -174.16 -1.95 -23.94 16 5 C -0.01 -0.56 6.46 42.26 0.27 -0.29 16 6 C -0.01 -0.63 5.71 29.85 0.17 -0.46 16 7 C 0.05 2.82 4.95 29.85 0.15 2.97 16 8 C -0.54 -33.05 9.11 25.60 0.23 -32.81 16 9 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 10 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 11 N -0.94 -60.31 13.29 21.45 0.28 -60.02 16 12 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 15 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 16 C -0.02 -0.66 6.74 38.77 0.26 -0.40 16 17 C -0.10 -3.16 10.10 22.39 0.23 -2.93 16 18 C -0.12 -2.60 10.07 22.35 0.23 -2.38 16 19 C -0.13 -2.21 9.97 22.08 0.22 -1.99 16 20 C 0.03 0.63 10.80 83.06 0.90 1.52 16 21 N -0.37 -11.81 2.94 -337.91 -0.99 -12.81 16 22 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.11 1.67 8.04 -2.39 -0.02 1.65 16 27 H 0.05 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.07 3.34 8.14 -2.38 -0.02 3.32 16 29 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 30 H -0.02 -1.66 8.14 -2.38 -0.02 -1.67 16 31 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 32 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 33 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.19 1.41 8.06 -2.91 -0.02 1.38 16 35 H 0.20 2.22 7.98 -2.91 -0.02 2.19 16 Total: -1.00 -81.77 302.53 5.44 -76.33 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 1.06 Total: 4.80 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 5.01 Total: -32.42 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -2.66 Total: -96.76 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -81.77 5.44 -76.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259976326.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.338 kcal (2) G-P(sol) polarization free energy of solvation -81.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds