Wall clock time and date at job start Mon Mar 30 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46973 * 2 1 4 4 C 1.50699 * 109.47418 * 120.00307 * 2 1 3 5 5 C 1.40820 * 120.11205 * 300.02262 * 4 2 1 6 6 C 1.34666 * 120.61513 * 179.57215 * 5 4 2 7 7 N 1.37064 * 120.56105 * 0.64308 * 6 5 4 8 8 C 1.35031 * 133.12520 * 179.24478 * 7 6 5 9 9 N 1.30895 * 109.37431 * 179.97438 * 8 7 6 10 10 C 1.33399 * 109.87181 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.26940 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47294 * 90.02507 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47454 * 59.99696 * 16 14 12 18 18 H 1.48506 * 109.47297 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46926 * 299.99488 * 16 14 12 20 20 C 1.37985 * 107.45953 * 0.26109 * 10 9 8 21 21 C 1.35872 * 120.11410 * 119.99990 * 4 2 1 22 22 H 1.08995 * 109.46723 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46717 * 299.99747 * 1 2 3 24 24 H 1.08992 * 109.46811 * 59.99995 * 1 2 3 25 25 H 1.09008 * 109.46767 * 240.00173 * 2 1 3 26 26 H 1.08998 * 109.47128 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47239 * 299.99886 * 3 2 1 28 28 H 1.08998 * 109.47193 * 60.00544 * 3 2 1 29 29 H 1.08001 * 119.68727 * 359.97413 * 5 4 2 30 30 H 1.08001 * 119.71722 * 179.90477 * 6 5 4 31 31 H 1.08000 * 125.31200 * 359.95558 * 8 7 6 32 32 H 1.09001 * 109.46953 * 210.01949 * 11 10 9 33 33 H 1.09000 * 109.47318 * 330.01547 * 11 10 9 34 34 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 35 35 H 1.08003 * 120.41485 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7105 1.2304 5 6 1.6934 -0.2317 2.5106 6 6 2.1296 -0.8637 3.6168 7 7 2.9228 -1.9770 3.5164 8 6 3.5015 -2.7837 4.4317 9 7 4.1705 -3.7268 3.8181 10 6 4.0572 -3.5772 2.4974 11 6 4.6786 -4.4577 1.4439 12 6 3.7281 -5.5749 1.0983 13 1 2.7700 -5.6410 1.5924 14 6 4.0820 -6.5132 0.1521 15 7 5.2489 -6.4330 -0.4492 16 14 2.9040 -7.8983 -0.2758 17 1 1.6353 -7.3269 -0.7943 18 1 3.5163 -8.7659 -1.3140 19 1 2.6239 -8.7033 0.9403 20 6 3.2713 -2.4656 2.2725 21 6 2.8138 -1.8153 1.1083 22 1 -0.3632 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5139 -0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.0723 0.6467 2.6060 30 1 1.8621 -0.4831 4.5915 31 1 3.4247 -2.6685 5.5028 32 1 4.8843 -3.8666 0.5515 33 1 5.6099 -4.8775 1.8243 34 1 5.4977 -7.0929 -1.1151 35 1 3.0795 -2.1919 0.1316 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259978492.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:02 Heat of formation + Delta-G solvation = 64.459177 kcal Electronic energy + Delta-G solvation = -17043.458748 eV Core-core repulsion = 14427.885517 eV Total energy + Delta-G solvation = -2615.573230 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.13502 -37.97794 -35.01339 -33.29509 -32.00258 -30.13517 -29.24637 -27.14423 -26.32858 -23.37304 -23.33883 -22.27944 -20.61085 -19.16934 -17.20188 -16.27477 -15.91504 -15.65333 -15.11703 -14.50310 -14.28966 -14.00112 -13.67040 -13.33302 -12.93379 -12.37973 -12.30785 -12.09226 -11.62212 -11.40490 -11.23422 -10.99915 -10.88251 -10.71584 -10.64099 -10.58642 -10.02966 -9.78483 -9.30209 -9.19364 -8.71256 -8.33724 -6.71297 -5.94371 -3.98103 1.27420 1.76544 3.17798 3.37592 3.41021 3.44703 3.69829 4.00555 4.52985 4.68100 4.73192 4.98122 5.09418 5.22557 5.24035 5.38581 5.44381 5.46353 5.58491 5.60443 5.78791 5.85754 5.94617 6.09164 6.19826 6.24985 6.28689 6.30790 6.47717 6.80293 7.08151 7.37960 7.55826 7.70522 7.84236 8.00183 8.41557 8.72348 9.04491 9.64141 11.14129 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.006926 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.400115 B = 4041.527729 C = 4846.893594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C -0.142 4.142 4 C -0.126 4.126 5 C -0.121 4.121 6 C 0.032 3.968 7 N -0.375 5.375 8 C 0.125 3.875 9 N -0.459 5.459 10 C 0.081 3.919 11 C 0.093 3.907 12 C -0.504 4.504 13 H 0.053 0.947 14 C 0.059 3.941 15 N -0.896 5.896 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.028 4.028 21 C -0.029 4.029 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.135 0.865 30 H 0.153 0.847 31 H 0.201 0.799 32 H 0.033 0.967 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.322 15.723 3.544 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 C -0.199 4.199 4 C -0.128 4.128 5 C -0.143 4.143 6 C -0.087 4.087 7 N -0.049 5.049 8 C -0.149 4.149 9 N -0.174 5.174 10 C -0.055 4.055 11 C 0.056 3.944 12 C -0.543 4.543 13 H 0.071 0.929 14 C -0.142 4.142 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.133 4.133 21 C -0.049 4.049 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.153 0.847 30 H 0.171 0.829 31 H 0.217 0.783 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.780 15.037 3.977 17.392 hybrid contribution -1.179 -0.149 -0.362 1.242 sum -8.959 14.888 3.615 17.748 Atomic orbital electron populations 1.21828 0.94720 1.02080 1.01342 1.19982 0.95610 0.95668 0.95362 1.21827 1.01306 0.95385 1.01381 1.19456 1.01572 0.97486 0.94320 1.20443 1.01914 1.00658 0.91235 1.21343 0.97748 0.89329 1.00326 1.42819 1.33462 1.19900 1.08683 1.24781 1.02015 0.91944 0.96121 1.70015 1.19569 1.20891 1.06899 1.22152 0.98125 0.93680 0.91583 1.17697 0.95866 0.91908 0.88970 1.20972 1.02242 1.09663 1.21376 0.92857 1.24957 0.95330 0.97811 0.96122 1.69943 1.20483 1.36111 1.26984 0.86615 0.81023 0.82059 0.78081 1.20301 1.21215 1.20217 1.19454 1.08031 1.01015 0.84829 1.20497 0.94458 0.92855 0.97069 0.92420 0.92808 0.92649 0.90225 0.92544 0.92652 0.92796 0.84702 0.82915 0.78256 0.94869 0.94487 0.92839 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.01 37.16 0.33 -1.12 16 2 C -0.05 -0.55 3.09 -91.77 -0.28 -0.84 16 3 C -0.14 -1.38 9.01 37.16 0.33 -1.05 16 4 C -0.13 -1.81 4.77 -104.49 -0.50 -2.31 16 5 C -0.12 -1.52 8.67 -39.87 -0.35 -1.87 16 6 C 0.03 0.43 10.97 -16.48 -0.18 0.25 16 7 N -0.38 -6.64 2.94 -62.44 -0.18 -6.83 16 8 C 0.13 2.28 12.75 -90.06 -1.15 1.13 16 9 N -0.46 -10.57 11.19 -10.19 -0.11 -10.68 16 10 C 0.08 1.97 6.40 -82.00 -0.52 1.45 16 11 C 0.09 2.56 5.53 -29.03 -0.16 2.40 16 12 C -0.50 -14.72 9.09 -34.44 -0.31 -15.04 16 13 H 0.05 1.58 7.74 -52.48 -0.41 1.17 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 16 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.03 -0.59 6.74 -84.09 -0.57 -1.15 16 21 C -0.03 -0.52 9.71 -39.39 -0.38 -0.90 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.49 7.42 -51.93 -0.39 0.11 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.95 7.87 -51.92 -0.41 0.55 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.48 7.42 -51.93 -0.39 0.09 16 29 H 0.14 1.26 7.17 -52.49 -0.38 0.88 16 30 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.20 2.62 8.06 -52.49 -0.42 2.20 16 32 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.14 2.61 7.94 -52.48 -0.42 2.19 16 LS Contribution 298.32 15.07 4.50 4.50 Total: -1.00 -33.04 298.32 -8.81 -41.86 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -4.89 Total: -2.35 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -3.83 Total: -17.44 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.44 Total: -43.67 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.04 -8.81 -41.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259978492.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.314 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds