Wall clock time and date at job start Mon Mar 30 2020 06:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46973 * 2 1 4 4 C 1.50699 * 109.47418 * 120.00307 * 2 1 3 5 5 C 1.40820 * 120.11205 * 300.02262 * 4 2 1 6 6 C 1.34666 * 120.61513 * 179.57215 * 5 4 2 7 7 N 1.37064 * 120.56105 * 0.64308 * 6 5 4 8 8 C 1.35031 * 133.12520 * 179.24478 * 7 6 5 9 9 N 1.30895 * 109.37431 * 179.97438 * 8 7 6 10 10 C 1.33399 * 109.87181 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.26940 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47294 * 90.02507 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47454 * 59.99696 * 16 14 12 18 18 H 1.48506 * 109.47297 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46926 * 299.99488 * 16 14 12 20 20 C 1.37985 * 107.45953 * 0.26109 * 10 9 8 21 21 C 1.35872 * 120.11410 * 119.99990 * 4 2 1 22 22 H 1.08995 * 109.46723 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46717 * 299.99747 * 1 2 3 24 24 H 1.08992 * 109.46811 * 59.99995 * 1 2 3 25 25 H 1.09008 * 109.46767 * 240.00173 * 2 1 3 26 26 H 1.08998 * 109.47128 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47239 * 299.99886 * 3 2 1 28 28 H 1.08998 * 109.47193 * 60.00544 * 3 2 1 29 29 H 1.08001 * 119.68727 * 359.97413 * 5 4 2 30 30 H 1.08001 * 119.71722 * 179.90477 * 6 5 4 31 31 H 1.08000 * 125.31200 * 359.95558 * 8 7 6 32 32 H 1.09001 * 109.46953 * 210.01949 * 11 10 9 33 33 H 1.09000 * 109.47318 * 330.01547 * 11 10 9 34 34 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 35 35 H 1.08003 * 120.41485 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7105 1.2304 5 6 1.6934 -0.2317 2.5106 6 6 2.1296 -0.8637 3.6168 7 7 2.9228 -1.9770 3.5164 8 6 3.5015 -2.7837 4.4317 9 7 4.1705 -3.7268 3.8181 10 6 4.0572 -3.5772 2.4974 11 6 4.6786 -4.4577 1.4439 12 6 3.7281 -5.5749 1.0983 13 1 2.7700 -5.6410 1.5924 14 6 4.0820 -6.5132 0.1521 15 7 5.2489 -6.4330 -0.4492 16 14 2.9040 -7.8983 -0.2758 17 1 1.6353 -7.3269 -0.7943 18 1 3.5163 -8.7659 -1.3140 19 1 2.6239 -8.7033 0.9403 20 6 3.2713 -2.4656 2.2725 21 6 2.8138 -1.8153 1.1083 22 1 -0.3632 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5139 -0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.0723 0.6467 2.6060 30 1 1.8621 -0.4831 4.5915 31 1 3.4247 -2.6685 5.5028 32 1 4.8843 -3.8666 0.5515 33 1 5.6099 -4.8775 1.8243 34 1 5.4977 -7.0929 -1.1151 35 1 3.0795 -2.1919 0.1316 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259978492.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:59 Heat of formation + Delta-G solvation = 46.002734 kcal Electronic energy + Delta-G solvation = -17044.259079 eV Core-core repulsion = 14427.885517 eV Total energy + Delta-G solvation = -2616.373562 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -43.57207 -39.18495 -36.32832 -35.25403 -33.54941 -31.42798 -31.07716 -27.99438 -27.92179 -25.31388 -24.58390 -23.65089 -21.88532 -20.59920 -18.62682 -18.45604 -17.10601 -16.84502 -16.61590 -16.43883 -15.59073 -15.27526 -14.70010 -14.42919 -14.22235 -14.07267 -13.87160 -13.37109 -13.06004 -12.89229 -12.69404 -12.59717 -12.49839 -12.08632 -11.93957 -11.84778 -11.61723 -11.56899 -11.04944 -10.96572 -10.59739 -10.07072 -8.35029 -8.00116 -6.32640 0.01937 0.44023 1.36032 1.40569 1.48737 1.86713 2.23640 2.42312 2.57846 3.09587 3.57697 3.70861 3.82731 3.99042 4.01745 4.25781 4.34056 4.35616 4.49746 4.69285 4.86835 4.87934 4.89540 5.02608 5.04036 5.13428 5.25837 5.30187 5.30747 5.45612 5.48919 5.66609 5.71672 5.74153 5.79897 6.19931 6.51162 6.75309 7.15903 7.34388 8.90037 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.006926 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.400115 B = 4041.527729 C = 4846.893594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 C -0.137 4.137 4 C -0.078 4.078 5 C -0.128 4.128 6 C 0.043 3.957 7 N -0.375 5.375 8 C 0.134 3.866 9 N -0.502 5.502 10 C 0.006 3.994 11 C 0.110 3.890 12 C -0.523 4.523 13 H 0.042 0.958 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.272 1.272 20 C -0.017 4.017 21 C -0.097 4.097 22 H 0.039 0.961 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.186 0.814 30 H 0.210 0.790 31 H 0.253 0.747 32 H 0.010 0.990 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.634 18.553 4.845 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C -0.194 4.194 4 C -0.081 4.081 5 C -0.149 4.149 6 C -0.075 4.075 7 N -0.048 5.048 8 C -0.141 4.141 9 N -0.217 5.217 10 C -0.128 4.128 11 C 0.072 3.928 12 C -0.562 4.562 13 H 0.060 0.940 14 C -0.192 4.192 15 N -0.569 5.569 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.197 1.197 20 C -0.125 4.125 21 C -0.117 4.117 22 H 0.058 0.942 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.203 0.797 30 H 0.227 0.773 31 H 0.269 0.731 32 H 0.029 0.971 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.084 17.870 5.273 21.680 hybrid contribution -0.247 -0.774 -0.742 1.100 sum -11.331 17.097 4.530 21.005 Atomic orbital electron populations 1.21809 0.92770 1.01581 1.03407 1.20146 0.97080 0.96701 0.93413 1.21799 1.00535 0.93695 1.03380 1.20002 0.96757 0.94412 0.96915 1.21039 1.02171 1.02023 0.89621 1.22436 0.94882 0.86793 1.03367 1.43032 1.33730 1.20924 1.07099 1.25608 1.00277 0.90415 0.97799 1.69781 1.21654 1.23623 1.06649 1.21467 1.03009 0.96570 0.91734 1.17214 0.94200 0.91944 0.89437 1.21202 1.02172 1.10891 1.21886 0.93971 1.25906 0.97193 1.00436 0.95634 1.70072 1.22274 1.37187 1.27389 0.85487 0.78884 0.78491 0.78093 1.19082 1.19809 1.19745 1.19411 1.06366 0.99739 0.86990 1.20412 0.99446 0.96248 0.95584 0.94205 0.90653 0.90772 0.91699 0.93825 0.90838 0.90688 0.79667 0.77300 0.73076 0.97142 0.98592 0.92401 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.01 71.98 0.65 -1.67 16 2 C -0.05 -1.15 3.09 -11.54 -0.04 -1.18 16 3 C -0.14 -2.16 9.01 71.98 0.65 -1.51 16 4 C -0.08 -2.10 4.77 -19.78 -0.09 -2.20 16 5 C -0.13 -2.58 8.67 22.08 0.19 -2.38 16 6 C 0.04 0.95 10.97 83.06 0.91 1.86 16 7 N -0.38 -12.64 2.94 -351.45 -1.03 -13.68 16 8 C 0.13 4.69 12.75 180.15 2.30 6.99 16 9 N -0.50 -24.20 11.19 -186.15 -2.08 -26.29 16 10 C 0.01 0.33 6.40 42.26 0.27 0.60 16 11 C 0.11 6.68 5.53 29.10 0.16 6.84 16 12 C -0.52 -32.85 9.09 25.60 0.23 -32.62 16 13 H 0.04 2.66 7.74 -2.91 -0.02 2.64 16 14 C 0.01 0.39 5.46 84.65 0.46 0.85 16 15 N -0.93 -58.81 13.29 21.45 0.28 -58.52 16 16 Si 0.97 46.84 29.54 68.60 2.03 48.86 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 20 C -0.02 -0.75 6.74 38.76 0.26 -0.49 16 21 C -0.10 -3.69 9.71 22.39 0.22 -3.47 16 22 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.07 0.95 7.42 -2.39 -0.02 0.94 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.55 7.87 -2.38 -0.02 1.54 16 26 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.07 0.89 7.42 -2.39 -0.02 0.87 16 29 H 0.19 1.98 7.17 -2.91 -0.02 1.96 16 30 H 0.21 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.25 5.65 8.06 -2.91 -0.02 5.63 16 32 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.12 4.93 7.94 -2.91 -0.02 4.90 16 Total: -1.00 -80.67 298.32 6.43 -74.24 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 1.07 Total: 3.77 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 6.17 Total: -28.38 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -2.83 Total: -98.49 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -80.67 6.43 -74.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259978492.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.240 kcal (2) G-P(sol) polarization free energy of solvation -80.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds