Wall clock time and date at job start Mon Mar 30 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 N 1.39874 * 125.46606 * 2 1 4 4 C 1.30234 * 110.08924 * 180.02562 * 3 2 1 5 5 C 1.45928 * 107.78629 * 0.02562 * 4 3 2 6 6 C 1.39948 * 134.02672 * 180.02562 * 5 4 3 7 7 C 1.36465 * 119.63119 * 179.97438 * 6 5 4 8 8 C 1.38974 * 120.63248 * 359.72838 * 7 6 5 9 9 C 1.36595 * 120.80613 * 0.55672 * 8 7 6 10 10 C 1.50702 * 120.06899 * 179.72301 * 9 8 7 11 11 C 1.53003 * 109.47224 * 120.30348 * 10 9 8 12 12 C 1.52998 * 109.47359 * 0.30411 * 10 9 8 13 13 C 1.50699 * 109.47126 * 240.30190 * 10 9 8 14 14 H 1.07999 * 119.99923 * 2.00079 * 13 10 9 15 15 C 1.37879 * 120.00249 * 181.71832 * 13 10 9 16 16 N 1.31509 * 119.99764 * 0.27508 * 15 13 10 17 17 Si 1.86799 * 120.00093 * 180.28010 * 15 13 10 18 18 H 1.48501 * 109.47002 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47303 * 119.99955 * 17 15 13 20 20 H 1.48503 * 109.46897 * 240.00127 * 17 15 13 21 21 C 1.37043 * 125.46230 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.47324 * 279.64746 * 1 2 3 23 23 H 1.09004 * 109.47293 * 39.64575 * 1 2 3 24 24 H 1.08999 * 109.47331 * 159.64939 * 1 2 3 25 25 H 1.08007 * 126.10778 * 179.97438 * 4 3 2 26 26 H 1.07994 * 120.18548 * 359.97438 * 6 5 4 27 27 H 1.08006 * 119.68878 * 180.02562 * 7 6 5 28 28 H 1.07993 * 119.59644 * 180.27345 * 8 7 6 29 29 H 1.08995 * 109.46928 * 160.13426 * 11 10 9 30 30 H 1.08999 * 109.47121 * 280.13758 * 11 10 9 31 31 H 1.09007 * 109.46852 * 40.13998 * 11 10 9 32 32 H 1.08997 * 109.47117 * 293.41506 * 12 10 9 33 33 H 1.09004 * 109.47069 * 53.41161 * 12 10 9 34 34 H 1.08996 * 109.47412 * 173.41143 * 12 10 9 35 35 H 0.97000 * 119.99956 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2765 1.1392 0.0000 4 6 3.5322 0.7939 -0.0005 5 6 3.5935 -0.6641 -0.0016 6 6 4.6398 -1.5936 -0.0020 7 6 4.3564 -2.9285 -0.0025 8 6 3.0396 -3.3728 0.0031 9 6 2.0016 -2.4849 -0.0021 10 6 0.5801 -2.9851 -0.0022 11 6 -0.1445 -2.4626 1.2399 12 6 0.5777 -4.5150 0.0118 13 6 -0.1256 -2.4930 -1.2395 14 1 0.4115 -1.9065 -1.9702 15 6 -1.4553 -2.7964 -1.4416 16 7 -2.1093 -3.5107 -0.5519 17 14 -2.3278 -2.1930 -2.9791 18 1 -1.3776 -1.4157 -3.8147 19 1 -2.8299 -3.3570 -3.7524 20 1 -3.4697 -1.3259 -2.5922 21 6 2.2600 -1.1162 -0.0005 22 1 -0.3634 0.1722 1.0132 23 1 -0.3634 0.7913 -0.6557 24 1 -0.3634 -0.9635 -0.3574 25 1 4.3773 1.4665 -0.0011 26 1 5.6657 -1.2563 -0.0020 27 1 5.1631 -3.6466 -0.0024 28 1 2.8345 -4.4331 0.0071 29 1 -1.2215 -2.5118 1.0799 30 1 0.1232 -3.0747 2.1012 31 1 0.1486 -1.4289 1.4236 32 1 0.9886 -4.8876 -0.9265 33 1 1.1870 -4.8717 0.8423 34 1 -0.4441 -4.8757 0.1297 35 1 -3.0448 -3.7238 -0.6939 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259997145.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:52 Heat of formation + Delta-G solvation = 88.178423 kcal Electronic energy + Delta-G solvation = -18290.083122 eV Core-core repulsion = 15675.538435 eV Total energy + Delta-G solvation = -2614.544687 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.21657 -38.81159 -37.27042 -34.07673 -32.97426 -30.66261 -30.44510 -27.87179 -27.41913 -26.58002 -24.12393 -22.57560 -21.98233 -20.37282 -18.20271 -17.86143 -17.15377 -16.53916 -16.29750 -15.94769 -15.18382 -14.93287 -14.74262 -14.51264 -14.01353 -13.68168 -13.27092 -13.08834 -12.93844 -12.78384 -12.55286 -12.34794 -12.25138 -12.08860 -11.91989 -11.64050 -11.41930 -11.01653 -10.94447 -10.56222 -10.35810 -9.39432 -8.47192 -8.08622 -6.20271 0.25990 0.82970 1.35569 1.42328 1.49965 1.72685 1.75780 2.37654 3.05392 3.12733 3.75866 3.90793 4.10525 4.29371 4.47126 4.52034 4.60989 4.64718 4.78239 4.87056 4.94850 5.03421 5.14577 5.16981 5.33998 5.36463 5.42281 5.55548 5.65389 5.69939 5.80546 5.87157 6.11308 6.13961 6.24035 6.35751 6.42252 6.77052 6.89915 7.37226 8.86289 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024394 B = 0.010257 C = 0.008492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.567182 B = 2729.275604 C = 3296.407626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.401 5.401 3 N -0.301 5.301 4 C 0.068 3.932 5 C -0.212 4.212 6 C -0.059 4.059 7 C -0.158 4.158 8 C -0.105 4.105 9 C -0.084 4.084 10 C 0.090 3.910 11 C -0.140 4.140 12 C -0.118 4.118 13 C -0.502 4.502 14 H 0.037 0.963 15 C 0.038 3.962 16 N -0.885 5.885 17 Si 0.931 3.069 18 H -0.280 1.280 19 H -0.278 1.278 20 H -0.275 1.275 21 C 0.116 3.884 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.169 0.831 25 H 0.235 0.765 26 H 0.159 0.841 27 H 0.153 0.847 28 H 0.134 0.866 29 H 0.075 0.925 30 H 0.017 0.983 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.034 0.966 34 H 0.057 0.943 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.622 2.079 1.566 9.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.188 5.188 3 N -0.114 5.114 4 C -0.128 4.128 5 C -0.220 4.220 6 C -0.079 4.079 7 C -0.177 4.177 8 C -0.126 4.126 9 C -0.087 4.087 10 C 0.089 3.911 11 C -0.197 4.197 12 C -0.175 4.175 13 C -0.540 4.540 14 H 0.055 0.945 15 C -0.164 4.164 16 N -0.522 5.522 17 Si 0.757 3.243 18 H -0.205 1.205 19 H -0.204 1.204 20 H -0.200 1.200 21 C 0.000 4.000 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.185 0.815 25 H 0.251 0.749 26 H 0.177 0.823 27 H 0.171 0.829 28 H 0.152 0.848 29 H 0.094 0.906 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.385 3.012 1.608 9.053 hybrid contribution -0.564 -0.261 -0.804 1.016 sum 7.821 2.751 0.803 8.329 Atomic orbital electron populations 1.23676 0.74176 1.10432 1.01125 1.48183 1.06216 1.00914 1.63510 1.76378 1.03869 1.10879 1.20232 1.25622 0.94853 0.93209 0.99111 1.20362 0.93103 0.94372 1.14160 1.20554 0.98172 0.91564 0.97621 1.20963 0.96227 0.96163 1.04325 1.21037 0.92361 0.99864 0.99318 1.19457 0.98088 0.89281 1.01922 1.17230 0.86974 0.93212 0.93652 1.22210 1.03524 0.97987 0.96001 1.21722 1.01119 0.96854 0.97823 1.20951 0.95199 1.32724 1.05086 0.94462 1.25403 0.97851 0.95112 0.98083 1.69926 1.10373 1.37270 1.34651 0.85919 0.78864 0.78450 0.81055 1.20477 1.20369 1.19994 1.19019 0.91143 0.89643 1.00154 0.92910 0.92443 0.81494 0.74911 0.82326 0.82924 0.84837 0.90642 0.96362 0.94759 0.95114 0.94699 0.92382 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.98 9.04 127.77 1.15 3.14 16 2 N -0.40 -17.66 3.95 -361.06 -1.43 -19.09 16 3 N -0.30 -11.91 12.40 -53.09 -0.66 -12.56 16 4 C 0.07 2.19 12.28 86.92 1.07 3.25 16 5 C -0.21 -7.61 6.37 -20.24 -0.13 -7.74 16 6 C -0.06 -1.70 10.07 22.27 0.22 -1.48 16 7 C -0.16 -4.64 9.97 22.03 0.22 -4.42 16 8 C -0.11 -3.86 8.94 22.06 0.20 -3.66 16 9 C -0.08 -3.64 4.69 -20.00 -0.09 -3.73 16 10 C 0.09 4.18 0.48 -53.67 -0.03 4.15 16 11 C -0.14 -6.51 7.42 71.98 0.53 -5.98 16 12 C -0.12 -5.25 6.77 71.98 0.49 -4.76 16 13 C -0.50 -25.36 4.62 25.60 0.12 -25.24 16 14 H 0.04 2.02 7.62 -2.91 -0.02 2.00 16 15 C 0.04 1.87 4.77 84.66 0.40 2.28 16 16 N -0.89 -44.97 9.48 21.45 0.20 -44.77 16 17 Si 0.93 40.84 29.54 68.60 2.03 42.86 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 C 0.12 5.01 5.96 39.21 0.23 5.24 16 22 H 0.05 2.19 7.15 -2.38 -0.02 2.17 16 23 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 24 H 0.17 7.98 1.83 -4.27 -0.01 7.97 16 25 H 0.23 4.76 8.06 -2.91 -0.02 4.73 16 26 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 27 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 28 H 0.13 4.57 5.81 -2.91 -0.02 4.55 16 29 H 0.07 3.77 5.64 -2.39 -0.01 3.76 16 30 H 0.02 0.78 7.99 -2.39 -0.02 0.76 16 31 H 0.03 1.55 3.86 -2.38 -0.01 1.55 16 32 H 0.03 1.33 7.87 -2.39 -0.02 1.31 16 33 H 0.03 1.37 7.09 -2.38 -0.02 1.36 16 34 H 0.06 2.82 6.41 -2.39 -0.02 2.81 16 35 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 Total: -1.00 -58.57 269.94 5.64 -52.93 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 1.10 Total: 19.58 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 4.39 Total: -38.95 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -1.88 Total: -76.42 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal Total: -58.57 5.64 -52.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997145.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.108 kcal (2) G-P(sol) polarization free energy of solvation -58.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds