Wall clock time and date at job start Mon Mar 30 2020 05:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37966 * 119.92372 * 2 1 4 4 C 1.39610 * 119.84521 * 180.02562 * 3 2 1 5 5 C 1.43205 * 120.14883 * 180.02562 * 4 3 2 6 6 N 4.80126 * 134.69990 * 0.02562 * 2 1 3 7 7 C 1.39652 * 119.70260 * 359.97438 * 4 3 2 8 8 C 1.37929 * 119.84154 * 0.27991 * 7 4 3 9 9 C 1.50698 * 119.91852 * 179.72317 * 8 7 4 10 10 H 1.09007 * 109.47114 * 144.99746 * 9 8 7 11 11 N 1.46901 * 109.47566 * 24.99736 * 9 8 7 12 12 C 1.52997 * 109.47166 * 264.99513 * 9 8 7 13 13 C 1.50703 * 109.47482 * 185.00640 * 12 9 8 14 14 H 1.08008 * 119.99621 * 359.97438 * 13 12 9 15 15 C 1.37872 * 120.00089 * 180.02562 * 13 12 9 16 16 N 1.31507 * 120.00316 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99782 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47531 * 59.99665 * 17 15 13 19 19 H 1.48499 * 109.47198 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47045 * 299.99362 * 17 15 13 21 21 C 1.38340 * 119.92497 * 180.02562 * 2 1 3 22 22 C 1.50703 * 119.84947 * 0.02562 * 21 2 1 23 23 H 1.09003 * 109.47149 * 90.00753 * 1 2 3 24 24 H 1.09007 * 109.47315 * 210.00162 * 1 2 3 25 25 H 1.08998 * 109.47692 * 330.00544 * 1 2 3 26 26 H 1.08004 * 120.07913 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.07603 * 179.97438 * 7 4 3 28 28 H 1.00900 * 110.99540 * 300.00080 * 11 9 8 29 29 H 1.00905 * 110.99708 * 63.95151 * 11 9 8 30 30 H 1.09004 * 109.47242 * 305.00562 * 12 9 8 31 31 H 1.09001 * 109.47085 * 65.00291 * 12 9 8 32 32 H 0.97001 * 120.00519 * 180.02562 * 16 15 13 33 33 H 1.08996 * 109.47319 * 89.99691 * 22 21 2 34 34 H 1.08996 * 109.47111 * 210.00133 * 22 21 2 35 35 H 1.09007 * 109.46526 * 329.99810 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1957 0.0000 4 6 3.5913 1.1938 -0.0005 5 6 4.3123 2.4312 0.0000 6 7 4.8841 3.4127 0.0015 7 6 4.2816 -0.0202 -0.0005 8 6 3.5809 -1.2082 -0.0058 9 6 4.3240 -2.5191 -0.0122 10 1 3.7711 -3.2531 0.5741 11 7 5.6577 -2.3289 0.5736 12 6 4.4656 -3.0182 -1.4515 13 6 5.0987 -4.3858 -1.4491 14 1 5.3731 -4.8522 -0.5144 15 6 5.3286 -5.0411 -2.6402 16 7 4.9951 -4.4730 -3.7783 17 14 6.1140 -6.7360 -2.6371 18 1 5.2589 -7.6765 -1.8694 19 1 6.2513 -7.2204 -4.0342 20 1 7.4557 -6.6587 -2.0055 21 6 2.1971 -1.1990 -0.0005 22 6 1.4385 -2.5011 -0.0017 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5137 26 1 1.6552 2.1311 -0.0004 27 1 5.3616 -0.0287 -0.0014 28 1 6.1905 -1.6525 0.0476 29 1 5.5915 -2.0614 1.5443 30 1 3.4807 -3.0746 -1.9151 31 1 5.0935 -2.3281 -2.0152 32 1 5.1565 -4.9342 -4.6163 33 1 1.2559 -2.8144 -1.0296 34 1 2.0243 -3.2634 0.5118 35 1 0.4863 -2.3673 0.5119 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260013714.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:27 Heat of formation + Delta-G solvation = 38.087665 kcal Electronic energy + Delta-G solvation = -16915.043626 eV Core-core repulsion = 14298.326841 eV Total energy + Delta-G solvation = -2616.716785 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.01489 -36.71391 -35.68079 -33.38414 -32.55094 -31.06563 -28.36759 -27.62201 -26.71845 -24.51064 -22.17595 -21.82790 -19.44607 -17.96942 -16.38029 -16.11228 -15.47460 -15.00323 -14.37972 -14.31113 -14.05300 -13.58528 -13.48198 -13.21097 -12.85830 -12.83240 -12.70375 -12.26464 -12.12432 -11.70906 -11.54007 -11.29167 -11.12500 -10.89013 -10.68119 -10.58487 -10.22701 -9.67438 -9.12235 -8.52803 -8.34045 -8.30685 -8.03433 -5.93919 -3.93126 0.87944 1.42403 2.68857 2.99798 3.38443 3.42734 3.46165 3.89851 3.95320 4.52094 4.78616 4.87424 5.03930 5.15877 5.21510 5.35019 5.46117 5.50052 5.54100 5.71688 5.78728 5.87735 5.95666 6.09643 6.21811 6.32719 6.36271 6.45026 6.66256 6.83418 6.99687 7.48610 7.50664 7.66522 7.92407 8.05554 8.10496 8.48656 9.12775 9.69261 11.17626 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024798 B = 0.006062 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.847090 B = 4618.125009 C = 5223.749044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.082 4.082 4 C -0.037 4.037 5 C 0.264 3.736 6 N -0.433 5.433 7 C -0.078 4.078 8 C -0.096 4.096 9 C 0.130 3.870 10 H 0.087 0.913 11 N -0.824 5.824 12 C 0.038 3.962 13 C -0.496 4.496 14 H 0.062 0.938 15 C 0.052 3.948 16 N -0.902 5.902 17 Si 0.892 3.108 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.278 1.278 21 C -0.044 4.044 22 C -0.126 4.126 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.334 0.666 29 H 0.323 0.677 30 H 0.023 0.977 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.052 7.259 8.558 14.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.102 4.102 4 C -0.041 4.041 5 C -0.051 4.051 6 N -0.108 5.108 7 C -0.099 4.099 8 C -0.099 4.099 9 C 0.018 3.982 10 H 0.105 0.895 11 N -0.351 5.351 12 C 0.001 3.999 13 C -0.534 4.534 14 H 0.080 0.920 15 C -0.148 4.148 16 N -0.542 5.542 17 Si 0.721 3.279 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.046 4.046 22 C -0.182 4.182 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.135 0.865 30 H 0.041 0.959 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.020 7.962 8.198 13.961 hybrid contribution 0.046 -0.140 -0.119 0.189 sum -7.974 7.821 8.079 13.785 Atomic orbital electron populations 1.20849 0.90832 1.02839 1.02652 1.19625 0.96166 0.92053 1.01220 1.20850 0.91637 0.98089 0.99664 1.15872 0.92215 0.86696 1.09267 1.25816 0.93215 0.92874 0.93187 1.81209 1.08686 1.11214 1.09738 1.20951 1.00020 0.90364 0.98597 1.21222 0.93968 0.97601 0.97083 1.20937 0.86905 0.89440 1.00890 0.89512 1.58816 1.16119 1.55071 1.05114 1.19121 0.97380 0.96371 0.87010 1.21100 1.38823 1.00968 0.92541 0.91984 1.25003 0.96146 0.97896 0.95731 1.69950 1.48660 1.38225 0.97376 0.86659 0.80023 0.84652 0.76613 1.20419 1.21641 1.20328 1.19896 0.93216 0.95148 0.96292 1.21035 0.99406 0.94178 1.03611 0.90898 0.90795 0.91768 0.85611 0.85508 0.85142 0.86530 0.95885 0.96596 0.93153 0.89838 0.90284 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.59 36.00 0.35 -0.69 16 2 C -0.09 -1.09 5.87 -104.69 -0.61 -1.70 16 3 C -0.08 -0.98 9.40 -39.17 -0.37 -1.35 16 4 C -0.04 -0.50 5.73 -106.93 -0.61 -1.11 16 5 C 0.26 3.80 15.33 -22.47 -0.34 3.46 16 6 N -0.43 -6.94 18.54 41.84 0.78 -6.16 16 7 C -0.08 -1.14 8.97 -39.17 -0.35 -1.49 16 8 C -0.10 -1.50 5.04 -104.68 -0.53 -2.03 16 9 C 0.13 2.37 2.43 -68.87 -0.17 2.20 16 10 H 0.09 1.58 6.14 -51.92 -0.32 1.26 16 11 N -0.82 -14.06 8.54 -5.65 -0.05 -14.11 16 12 C 0.04 0.91 4.60 -27.88 -0.13 0.78 16 13 C -0.50 -13.30 8.84 -34.44 -0.30 -13.61 16 14 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 15 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 16 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 17 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 C -0.04 -0.62 5.89 -104.53 -0.62 -1.23 16 22 C -0.13 -1.62 8.99 36.01 0.32 -1.30 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.60 5.93 -51.93 -0.31 0.29 16 25 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 26 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 27 H 0.13 1.76 6.28 -52.49 -0.33 1.43 16 28 H 0.33 5.54 7.20 -39.29 -0.28 5.25 16 29 H 0.32 4.57 9.06 -39.29 -0.36 4.22 16 30 H 0.02 0.58 7.95 -51.93 -0.41 0.16 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.07 6.01 -51.93 -0.31 0.76 16 35 H 0.07 0.67 5.93 -51.92 -0.31 0.36 16 LS Contribution 298.50 15.07 4.50 4.50 Total: -1.00 -30.24 298.50 -6.80 -37.05 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.28 Total: 4.71 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -3.46 Total: -16.71 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 1.46 Total: -46.01 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.24 -6.80 -37.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260013714.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.134 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds