Wall clock time and date at job start Mon Mar 30 2020 05:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37966 * 119.92372 * 2 1 4 4 C 1.39610 * 119.84521 * 180.02562 * 3 2 1 5 5 C 1.43205 * 120.14883 * 180.02562 * 4 3 2 6 6 N 4.80126 * 134.69990 * 0.02562 * 2 1 3 7 7 C 1.39652 * 119.70260 * 359.97438 * 4 3 2 8 8 C 1.37929 * 119.84154 * 0.27991 * 7 4 3 9 9 C 1.50698 * 119.91852 * 179.72317 * 8 7 4 10 10 H 1.09007 * 109.47114 * 144.99746 * 9 8 7 11 11 N 1.46901 * 109.47566 * 24.99736 * 9 8 7 12 12 C 1.52997 * 109.47166 * 264.99513 * 9 8 7 13 13 C 1.50703 * 109.47482 * 185.00640 * 12 9 8 14 14 H 1.08008 * 119.99621 * 359.97438 * 13 12 9 15 15 C 1.37872 * 120.00089 * 180.02562 * 13 12 9 16 16 N 1.31507 * 120.00316 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99782 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47531 * 59.99665 * 17 15 13 19 19 H 1.48499 * 109.47198 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47045 * 299.99362 * 17 15 13 21 21 C 1.38340 * 119.92497 * 180.02562 * 2 1 3 22 22 C 1.50703 * 119.84947 * 0.02562 * 21 2 1 23 23 H 1.09003 * 109.47149 * 90.00753 * 1 2 3 24 24 H 1.09007 * 109.47315 * 210.00162 * 1 2 3 25 25 H 1.08998 * 109.47692 * 330.00544 * 1 2 3 26 26 H 1.08004 * 120.07913 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.07603 * 179.97438 * 7 4 3 28 28 H 1.00900 * 110.99540 * 300.00080 * 11 9 8 29 29 H 1.00905 * 110.99708 * 63.95151 * 11 9 8 30 30 H 1.09004 * 109.47242 * 305.00562 * 12 9 8 31 31 H 1.09001 * 109.47085 * 65.00291 * 12 9 8 32 32 H 0.97001 * 120.00519 * 180.02562 * 16 15 13 33 33 H 1.08996 * 109.47319 * 89.99691 * 22 21 2 34 34 H 1.08996 * 109.47111 * 210.00133 * 22 21 2 35 35 H 1.09007 * 109.46526 * 329.99810 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1957 0.0000 4 6 3.5913 1.1938 -0.0005 5 6 4.3123 2.4312 0.0000 6 7 4.8841 3.4127 0.0015 7 6 4.2816 -0.0202 -0.0005 8 6 3.5809 -1.2082 -0.0058 9 6 4.3240 -2.5191 -0.0122 10 1 3.7711 -3.2531 0.5741 11 7 5.6577 -2.3289 0.5736 12 6 4.4656 -3.0182 -1.4515 13 6 5.0987 -4.3858 -1.4491 14 1 5.3731 -4.8522 -0.5144 15 6 5.3286 -5.0411 -2.6402 16 7 4.9951 -4.4730 -3.7783 17 14 6.1140 -6.7360 -2.6371 18 1 5.2589 -7.6765 -1.8694 19 1 6.2513 -7.2204 -4.0342 20 1 7.4557 -6.6587 -2.0055 21 6 2.1971 -1.1990 -0.0005 22 6 1.4385 -2.5011 -0.0017 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5137 26 1 1.6552 2.1311 -0.0004 27 1 5.3616 -0.0287 -0.0014 28 1 6.1905 -1.6525 0.0476 29 1 5.5915 -2.0614 1.5443 30 1 3.4807 -3.0746 -1.9151 31 1 5.0935 -2.3281 -2.0152 32 1 5.1565 -4.9342 -4.6163 33 1 1.2559 -2.8144 -1.0296 34 1 2.0243 -3.2634 0.5118 35 1 0.4863 -2.3673 0.5119 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260013714.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:27 Heat of formation + Delta-G solvation = 19.919885 kcal Electronic energy + Delta-G solvation = -16915.831440 eV Core-core repulsion = 14298.326841 eV Total energy + Delta-G solvation = -2617.504599 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12250 -37.94631 -37.02726 -34.67520 -34.31143 -32.20098 -30.20321 -28.68977 -27.63977 -26.23705 -23.50527 -23.16580 -20.73919 -19.17018 -18.25256 -17.40433 -16.71410 -16.44200 -16.08323 -15.46216 -15.30941 -14.72250 -14.65172 -14.39904 -14.12574 -14.07002 -13.88683 -13.56414 -13.28015 -13.15090 -12.90296 -12.67961 -12.55699 -12.35712 -12.23970 -11.86840 -11.86034 -11.42588 -11.14246 -10.46225 -9.62099 -9.50382 -9.37794 -8.07698 -6.13143 -0.20958 0.36327 1.45806 1.48096 1.53788 1.55391 1.86957 2.50047 2.78917 2.85395 3.26179 3.79574 3.82588 3.91365 4.02382 4.24207 4.29065 4.46707 4.64315 4.73261 4.83334 4.86804 4.94136 5.02997 5.06339 5.27327 5.28642 5.35171 5.41922 5.55100 5.67191 5.78408 5.91522 5.95021 6.34166 6.37159 6.54035 6.83034 7.01379 7.53455 9.03642 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024798 B = 0.006062 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.847090 B = 4618.125009 C = 5223.749044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.070 4.070 4 C -0.043 4.043 5 C 0.282 3.718 6 N -0.463 5.463 7 C -0.084 4.084 8 C -0.116 4.116 9 C 0.145 3.855 10 H 0.087 0.913 11 N -0.834 5.834 12 C 0.047 3.953 13 C -0.503 4.503 14 H 0.061 0.939 15 C -0.003 4.003 16 N -0.939 5.939 17 Si 0.955 3.045 18 H -0.267 1.267 19 H -0.290 1.290 20 H -0.274 1.274 21 C -0.052 4.052 22 C -0.125 4.125 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.156 0.844 27 H 0.126 0.874 28 H 0.336 0.664 29 H 0.342 0.658 30 H 0.003 0.997 31 H -0.016 1.016 32 H 0.258 0.742 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.412 7.529 9.769 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.090 4.090 4 C -0.046 4.046 5 C -0.032 4.032 6 N -0.139 5.139 7 C -0.105 4.105 8 C -0.119 4.119 9 C 0.034 3.966 10 H 0.104 0.896 11 N -0.364 5.364 12 C 0.010 3.990 13 C -0.542 4.542 14 H 0.079 0.921 15 C -0.199 4.199 16 N -0.581 5.581 17 Si 0.782 3.218 18 H -0.192 1.192 19 H -0.216 1.216 20 H -0.200 1.200 21 C -0.053 4.053 22 C -0.181 4.181 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.173 0.827 27 H 0.144 0.856 28 H 0.150 0.850 29 H 0.156 0.844 30 H 0.021 0.979 31 H 0.002 0.998 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.383 8.233 9.439 15.650 hybrid contribution 0.422 -0.187 -0.479 0.665 sum -8.961 8.046 8.960 15.010 Atomic orbital electron populations 1.20943 0.88160 1.04515 1.03513 1.19966 0.97995 0.91051 0.99640 1.21224 0.90927 0.99422 0.97422 1.15892 0.92970 0.85749 1.10007 1.25849 0.92522 0.92585 0.92243 1.81229 1.09481 1.12231 1.10960 1.20947 1.00152 0.90569 0.98788 1.20914 0.94772 0.96409 0.99792 1.20447 0.87908 0.91047 0.97235 0.89566 1.58718 1.15697 1.55568 1.06371 1.18911 0.95106 0.94667 0.90319 1.21480 1.38133 1.02193 0.92356 0.92079 1.25830 0.96895 1.01714 0.95501 1.70084 1.50213 1.39855 0.97907 0.85645 0.79203 0.80383 0.76613 1.19175 1.21586 1.19973 1.20121 0.92716 0.96519 0.95980 1.21038 1.00756 0.93418 1.02889 0.90279 0.89783 0.89529 0.82672 0.85587 0.84989 0.84448 0.97897 0.99808 0.93301 0.91384 0.91450 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.59 71.23 0.68 -0.93 16 2 C -0.09 -1.83 5.87 -19.91 -0.12 -1.95 16 3 C -0.07 -1.46 9.40 22.54 0.21 -1.25 16 4 C -0.04 -1.09 5.73 -21.36 -0.12 -1.21 16 5 C 0.28 7.78 15.33 88.33 1.35 9.13 16 6 N -0.46 -14.43 18.54 19.01 0.35 -14.08 16 7 C -0.08 -2.40 8.97 22.54 0.20 -2.19 16 8 C -0.12 -3.60 5.04 -19.90 -0.10 -3.70 16 9 C 0.15 5.36 2.43 44.17 0.11 5.47 16 10 H 0.09 3.16 6.14 -2.38 -0.01 3.15 16 11 N -0.83 -28.55 8.54 -171.80 -1.47 -30.02 16 12 C 0.05 2.33 4.60 29.85 0.14 2.46 16 13 C -0.50 -27.46 8.84 25.60 0.23 -27.23 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 16 N -0.94 -56.39 13.29 21.44 0.28 -56.11 16 17 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 21 C -0.05 -1.38 5.89 -19.80 -0.12 -1.50 16 22 C -0.13 -3.08 8.99 71.24 0.64 -2.44 16 23 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.08 1.03 5.93 -2.38 -0.01 1.01 16 25 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 26 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 27 H 0.13 3.52 6.28 -2.91 -0.02 3.51 16 28 H 0.34 11.30 7.20 -89.69 -0.65 10.66 16 29 H 0.34 9.48 9.06 -89.69 -0.81 8.66 16 30 H 0.00 0.15 7.95 -2.39 -0.02 0.13 16 31 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 32 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.80 6.01 -2.39 -0.01 1.79 16 35 H 0.10 1.73 5.93 -2.38 -0.01 1.71 16 Total: -1.00 -65.73 298.50 4.44 -61.29 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -0.33 Total: 17.59 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 3.57 Total: -25.06 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -0.83 Total: -100.20 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.73 4.44 -61.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260013714.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.214 kcal (2) G-P(sol) polarization free energy of solvation -65.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds