Wall clock time and date at job start Mon Mar 30 2020 05:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37971 * 119.92329 * 2 1 4 4 C 1.39613 * 119.84458 * 179.97438 * 3 2 1 5 5 C 1.43194 * 120.14796 * 180.02562 * 4 3 2 6 6 N 4.80130 * 134.70045 * 0.02562 * 2 1 3 7 7 C 1.39650 * 119.69826 * 359.97438 * 4 3 2 8 8 C 1.37924 * 119.84856 * 0.02562 * 7 4 3 9 9 C 1.50698 * 119.92521 * 179.97438 * 8 7 4 10 10 H 1.08995 * 109.47357 * 219.99886 * 9 8 7 11 11 N 1.46901 * 109.47303 * 339.99807 * 9 8 7 12 12 C 1.52999 * 109.47178 * 99.99599 * 9 8 7 13 13 C 1.50703 * 109.47071 * 175.00077 * 12 9 8 14 14 H 1.07994 * 120.00083 * 0.02562 * 13 12 9 15 15 C 1.37883 * 119.99801 * 180.02562 * 13 12 9 16 16 N 1.31511 * 120.00177 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99726 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47182 * 89.99590 * 17 15 13 19 19 H 1.48502 * 109.47323 * 209.99620 * 17 15 13 20 20 H 1.48500 * 109.47487 * 329.99906 * 17 15 13 21 21 C 1.38334 * 119.92321 * 179.72054 * 2 1 3 22 22 C 1.50703 * 119.85165 * 0.02562 * 21 2 1 23 23 H 1.09002 * 109.47152 * 90.00224 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00324 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00305 * 1 2 3 26 26 H 1.08000 * 120.07773 * 359.95320 * 3 2 1 27 27 H 1.08000 * 120.07639 * 179.97438 * 7 4 3 28 28 H 1.00898 * 111.00030 * 296.04750 * 11 9 8 29 29 H 1.00907 * 110.99439 * 60.00003 * 11 9 8 30 30 H 1.08996 * 109.47496 * 295.00122 * 12 9 8 31 31 H 1.09004 * 109.46903 * 55.00669 * 12 9 8 32 32 H 0.97000 * 120.00110 * 180.02562 * 16 15 13 33 33 H 1.08992 * 109.47067 * 89.99579 * 22 21 2 34 34 H 1.09000 * 109.47134 * 209.99839 * 22 21 2 35 35 H 1.09007 * 109.46650 * 330.00058 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1958 0.0000 4 6 3.5914 1.1939 0.0005 5 6 4.3123 2.4311 0.0011 6 7 4.8843 3.4127 0.0015 7 6 4.2816 -0.0201 0.0016 8 6 3.5809 -1.2081 0.0016 9 6 4.3240 -2.5192 0.0022 10 1 3.8186 -3.2236 -0.6584 11 7 5.6979 -2.3036 -0.4711 12 6 4.3571 -3.0860 1.4229 13 6 4.9913 -4.4530 1.4037 14 1 5.3366 -4.8750 0.4716 15 6 5.1307 -5.1648 2.5764 16 7 4.7106 -4.6507 3.7116 17 14 5.9162 -6.8595 2.5524 18 1 7.3823 -6.7283 2.7487 19 1 5.3426 -7.6864 3.6444 20 1 5.6482 -7.5110 1.2452 21 6 2.1971 -1.1989 0.0058 22 6 1.4385 -2.5011 0.0116 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6553 2.1311 -0.0008 27 1 5.3616 -0.0288 0.0016 28 1 5.7050 -1.9903 -1.4301 29 1 6.1879 -1.6537 0.1254 30 1 4.9390 -2.4245 2.0646 31 1 3.3399 -3.1629 1.8072 32 1 4.8090 -5.1513 4.5366 33 1 1.2559 -2.8197 -1.0146 34 1 2.0244 -3.2606 0.5292 35 1 0.4863 -2.3645 0.5245 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260013721.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:30 Heat of formation + Delta-G solvation = 38.172874 kcal Electronic energy + Delta-G solvation = -16928.934335 eV Core-core repulsion = 14312.221245 eV Total energy + Delta-G solvation = -2616.713090 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.01898 -36.72327 -35.68957 -33.40179 -32.53667 -31.06150 -28.43270 -27.55267 -26.71417 -24.51694 -22.15174 -21.80255 -19.46372 -17.95857 -16.34125 -16.15509 -15.46668 -15.02194 -14.42107 -14.29271 -14.07187 -13.59662 -13.48732 -13.16499 -12.86237 -12.83302 -12.60313 -12.23390 -12.21658 -11.67495 -11.56276 -11.30092 -11.10053 -10.87683 -10.63612 -10.55951 -10.27973 -9.67393 -9.11187 -8.53354 -8.33009 -8.30363 -8.04614 -5.95003 -3.94118 0.87878 1.42598 2.68257 2.99360 3.36802 3.43128 3.46635 3.89599 3.94875 4.51499 4.79306 4.88211 5.04782 5.17421 5.22899 5.36951 5.45666 5.52644 5.56208 5.71508 5.80510 5.93064 5.96398 6.05459 6.21199 6.33271 6.40675 6.45577 6.70117 6.82558 6.99263 7.47545 7.50155 7.66250 7.91657 8.04829 8.09965 8.47541 9.12238 9.68406 11.16502 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025248 B = 0.006056 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.744850 B = 4622.775038 C = 5240.294186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.082 4.082 4 C -0.037 4.037 5 C 0.264 3.736 6 N -0.433 5.433 7 C -0.081 4.081 8 C -0.096 4.096 9 C 0.131 3.869 10 H 0.086 0.914 11 N -0.824 5.824 12 C 0.035 3.965 13 C -0.496 4.496 14 H 0.063 0.937 15 C 0.052 3.948 16 N -0.901 5.901 17 Si 0.892 3.108 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.274 1.274 21 C -0.042 4.042 22 C -0.136 4.136 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.324 0.676 29 H 0.335 0.665 30 H 0.016 0.984 31 H 0.026 0.974 32 H 0.258 0.742 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.378 7.586 -8.370 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.102 4.102 4 C -0.041 4.041 5 C -0.051 4.051 6 N -0.109 5.109 7 C -0.102 4.102 8 C -0.099 4.099 9 C 0.020 3.980 10 H 0.103 0.897 11 N -0.351 5.351 12 C -0.002 4.002 13 C -0.534 4.534 14 H 0.081 0.919 15 C -0.148 4.148 16 N -0.542 5.542 17 Si 0.721 3.279 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.199 1.199 21 C -0.043 4.043 22 C -0.192 4.192 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.135 0.865 29 H 0.149 0.851 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.376 8.269 -8.041 13.691 hybrid contribution 0.038 -0.114 0.096 0.154 sum -7.339 8.155 -7.945 13.546 Atomic orbital electron populations 1.20852 0.90834 1.03159 1.02346 1.19644 0.96188 0.92071 1.01201 1.20858 0.91640 0.98095 0.99627 1.15866 0.92214 0.86691 1.09316 1.25819 0.93209 0.92874 0.93176 1.81213 1.08707 1.11201 1.09764 1.20958 1.00010 0.90384 0.98822 1.21250 0.94011 0.97546 0.97049 1.20872 0.86221 0.89377 1.01576 0.89656 1.58789 1.15738 1.55271 1.05342 1.19190 0.97559 0.96040 0.87390 1.21143 1.38025 1.00537 0.93724 0.91899 1.25010 0.96015 0.98071 0.95698 1.69962 1.47844 1.38040 0.98318 0.86595 0.79495 0.84421 0.77434 1.20883 1.21588 1.19939 1.19903 0.93189 0.95171 0.96050 1.21161 1.00439 0.94982 1.02592 0.91150 0.91685 0.90625 0.85622 0.85528 0.86500 0.85091 0.96524 0.95545 0.93196 0.90984 0.88632 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.60 36.01 0.35 -0.71 16 2 C -0.09 -1.10 5.87 -104.68 -0.61 -1.72 16 3 C -0.08 -0.98 9.41 -39.17 -0.37 -1.35 16 4 C -0.04 -0.50 5.73 -106.93 -0.61 -1.12 16 5 C 0.26 3.78 15.33 -22.47 -0.34 3.44 16 6 N -0.43 -6.91 18.54 41.84 0.78 -6.13 16 7 C -0.08 -1.17 8.95 -39.17 -0.35 -1.52 16 8 C -0.10 -1.50 5.07 -104.68 -0.53 -2.03 16 9 C 0.13 2.39 2.24 -68.87 -0.15 2.23 16 10 H 0.09 1.56 7.29 -51.93 -0.38 1.18 16 11 N -0.82 -14.02 8.42 -5.66 -0.05 -14.07 16 12 C 0.04 0.83 4.29 -27.88 -0.12 0.71 16 13 C -0.50 -13.22 8.84 -34.44 -0.30 -13.52 16 14 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 15 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 16 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 21 C -0.04 -0.59 5.88 -104.53 -0.61 -1.20 16 22 C -0.14 -1.79 8.78 36.01 0.32 -1.48 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 25 H 0.08 0.67 5.92 -51.93 -0.31 0.37 16 26 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 27 H 0.13 1.72 6.24 -52.49 -0.33 1.40 16 28 H 0.32 4.57 9.06 -39.29 -0.36 4.21 16 29 H 0.33 5.53 7.28 -39.29 -0.29 5.24 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.65 6.45 -51.93 -0.33 0.32 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.54 5.04 -51.93 -0.26 1.28 16 35 H 0.07 0.80 5.92 -51.92 -0.31 0.49 16 LS Contribution 296.37 15.07 4.47 4.47 Total: -1.00 -29.98 296.37 -6.75 -36.73 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.21 Total: 5.10 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -3.45 Total: -16.92 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 1.46 Total: -45.77 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.98 -6.75 -36.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260013721.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.904 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds