Wall clock time and date at job start Mon Mar 30 2020 05:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37971 * 119.92329 * 2 1 4 4 C 1.39613 * 119.84458 * 179.97438 * 3 2 1 5 5 C 1.43194 * 120.14796 * 180.02562 * 4 3 2 6 6 N 4.80130 * 134.70045 * 0.02562 * 2 1 3 7 7 C 1.39650 * 119.69826 * 359.97438 * 4 3 2 8 8 C 1.37924 * 119.84856 * 0.02562 * 7 4 3 9 9 C 1.50698 * 119.92521 * 179.97438 * 8 7 4 10 10 H 1.08995 * 109.47357 * 219.99886 * 9 8 7 11 11 N 1.46901 * 109.47303 * 339.99807 * 9 8 7 12 12 C 1.52999 * 109.47178 * 99.99599 * 9 8 7 13 13 C 1.50703 * 109.47071 * 175.00077 * 12 9 8 14 14 H 1.07994 * 120.00083 * 0.02562 * 13 12 9 15 15 C 1.37883 * 119.99801 * 180.02562 * 13 12 9 16 16 N 1.31511 * 120.00177 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99726 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47182 * 89.99590 * 17 15 13 19 19 H 1.48502 * 109.47323 * 209.99620 * 17 15 13 20 20 H 1.48500 * 109.47487 * 329.99906 * 17 15 13 21 21 C 1.38334 * 119.92321 * 179.72054 * 2 1 3 22 22 C 1.50703 * 119.85165 * 0.02562 * 21 2 1 23 23 H 1.09002 * 109.47152 * 90.00224 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00324 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00305 * 1 2 3 26 26 H 1.08000 * 120.07773 * 359.95320 * 3 2 1 27 27 H 1.08000 * 120.07639 * 179.97438 * 7 4 3 28 28 H 1.00898 * 111.00030 * 296.04750 * 11 9 8 29 29 H 1.00907 * 110.99439 * 60.00003 * 11 9 8 30 30 H 1.08996 * 109.47496 * 295.00122 * 12 9 8 31 31 H 1.09004 * 109.46903 * 55.00669 * 12 9 8 32 32 H 0.97000 * 120.00110 * 180.02562 * 16 15 13 33 33 H 1.08992 * 109.47067 * 89.99579 * 22 21 2 34 34 H 1.09000 * 109.47134 * 209.99839 * 22 21 2 35 35 H 1.09007 * 109.46650 * 330.00058 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1958 0.0000 4 6 3.5914 1.1939 0.0005 5 6 4.3123 2.4311 0.0011 6 7 4.8843 3.4127 0.0015 7 6 4.2816 -0.0201 0.0016 8 6 3.5809 -1.2081 0.0016 9 6 4.3240 -2.5192 0.0022 10 1 3.8186 -3.2236 -0.6584 11 7 5.6979 -2.3036 -0.4711 12 6 4.3571 -3.0860 1.4229 13 6 4.9913 -4.4530 1.4037 14 1 5.3366 -4.8750 0.4716 15 6 5.1307 -5.1648 2.5764 16 7 4.7106 -4.6507 3.7116 17 14 5.9162 -6.8595 2.5524 18 1 7.3823 -6.7283 2.7487 19 1 5.3426 -7.6864 3.6444 20 1 5.6482 -7.5110 1.2452 21 6 2.1971 -1.1989 0.0058 22 6 1.4385 -2.5011 0.0116 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6553 2.1311 -0.0008 27 1 5.3616 -0.0288 0.0016 28 1 5.7050 -1.9903 -1.4301 29 1 6.1879 -1.6537 0.1254 30 1 4.9390 -2.4245 2.0646 31 1 3.3399 -3.1629 1.8072 32 1 4.8090 -5.1513 4.5366 33 1 1.2559 -2.8197 -1.0146 34 1 2.0244 -3.2606 0.5292 35 1 0.4863 -2.3645 0.5245 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260013721.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:30 Heat of formation + Delta-G solvation = 20.178653 kcal Electronic energy + Delta-G solvation = -16929.714623 eV Core-core repulsion = 14312.221245 eV Total energy + Delta-G solvation = -2617.493378 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12878 -37.95115 -37.02781 -34.70098 -34.28795 -32.19245 -30.23445 -28.64626 -27.64027 -26.24476 -23.43612 -23.17613 -20.75410 -19.14928 -18.25286 -17.40841 -16.72034 -16.44735 -16.09097 -15.47311 -15.31758 -14.74917 -14.63621 -14.35647 -14.14885 -14.01211 -13.88008 -13.52937 -13.29950 -13.16534 -12.88122 -12.70143 -12.53492 -12.29453 -12.19856 -11.99427 -11.81574 -11.42395 -11.11406 -10.45941 -9.60031 -9.48099 -9.40081 -8.07602 -6.12648 -0.20609 0.36680 1.45557 1.46781 1.54058 1.57041 1.87175 2.50140 2.79175 2.85475 3.26446 3.80292 3.82663 3.91185 4.02757 4.25359 4.33984 4.51446 4.62209 4.73379 4.84473 4.86032 4.91540 5.00760 5.09048 5.25161 5.29778 5.37001 5.42030 5.59970 5.70216 5.76526 5.92168 5.95708 6.34668 6.37514 6.54351 6.82845 7.02072 7.53808 9.03867 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025248 B = 0.006056 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.744850 B = 4622.775038 C = 5240.294186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.069 4.069 4 C -0.043 4.043 5 C 0.283 3.717 6 N -0.463 5.463 7 C -0.085 4.085 8 C -0.116 4.116 9 C 0.148 3.852 10 H 0.083 0.917 11 N -0.834 5.834 12 C 0.044 3.956 13 C -0.502 4.502 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.938 5.938 17 Si 0.955 3.045 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.264 1.264 21 C -0.051 4.051 22 C -0.133 4.133 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.155 0.845 27 H 0.128 0.872 28 H 0.342 0.658 29 H 0.337 0.663 30 H -0.017 1.017 31 H 0.010 0.990 32 H 0.258 0.742 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.654 8.018 -9.548 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.090 4.090 4 C -0.046 4.046 5 C -0.032 4.032 6 N -0.139 5.139 7 C -0.105 4.105 8 C -0.119 4.119 9 C 0.036 3.964 10 H 0.101 0.899 11 N -0.364 5.364 12 C 0.007 3.993 13 C -0.541 4.541 14 H 0.079 0.921 15 C -0.199 4.199 16 N -0.580 5.580 17 Si 0.781 3.219 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.188 1.188 21 C -0.052 4.052 22 C -0.189 4.189 23 H 0.107 0.893 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.173 0.827 27 H 0.146 0.854 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.002 0.998 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.652 8.704 -9.248 15.366 hybrid contribution 0.385 -0.214 0.441 0.624 sum -8.267 8.489 -8.806 14.763 Atomic orbital electron populations 1.20943 0.88226 1.04136 1.03827 1.19964 0.97972 0.91072 0.99727 1.21222 0.90971 0.99374 0.97399 1.15883 0.92935 0.85778 1.10042 1.25839 0.92515 0.92575 0.92235 1.81234 1.09501 1.12203 1.10974 1.20961 1.00221 0.90500 0.98865 1.20935 0.94747 0.96400 0.99797 1.20371 0.87271 0.90811 0.97967 0.89943 1.58693 1.15265 1.55821 1.06611 1.18989 0.95519 0.94435 0.90368 1.21508 1.37285 1.01824 0.93448 0.92147 1.25818 0.96770 1.01823 0.95487 1.70088 1.49448 1.39580 0.98885 0.85598 0.78350 0.80150 0.77785 1.20775 1.21316 1.18824 1.20115 0.92759 0.96458 0.95861 1.21133 1.00555 0.93665 1.03530 0.89269 0.89962 0.90454 0.82698 0.85418 0.84439 0.84921 0.99820 0.97180 0.93301 0.89116 0.92163 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 9.60 71.24 0.68 -0.97 16 2 C -0.09 -1.87 5.87 -19.90 -0.12 -1.99 16 3 C -0.07 -1.46 9.41 22.54 0.21 -1.25 16 4 C -0.04 -1.08 5.73 -21.36 -0.12 -1.21 16 5 C 0.28 7.70 15.33 88.33 1.35 9.06 16 6 N -0.46 -14.30 18.54 19.00 0.35 -13.94 16 7 C -0.08 -2.39 8.95 22.54 0.20 -2.19 16 8 C -0.12 -3.60 5.07 -19.90 -0.10 -3.70 16 9 C 0.15 5.45 2.24 44.17 0.10 5.55 16 10 H 0.08 3.04 7.29 -2.39 -0.02 3.03 16 11 N -0.83 -28.50 8.42 -171.81 -1.45 -29.94 16 12 C 0.04 2.15 4.29 29.85 0.13 2.28 16 13 C -0.50 -27.31 8.84 25.60 0.23 -27.08 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 15 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 16 N -0.94 -56.07 13.29 21.45 0.28 -55.78 16 17 Si 0.95 44.30 29.54 68.60 2.03 46.32 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 21 C -0.05 -1.36 5.88 -19.80 -0.12 -1.48 16 22 C -0.13 -3.38 8.78 71.24 0.63 -2.75 16 23 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 25 H 0.08 1.11 5.92 -2.38 -0.01 1.10 16 26 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 27 H 0.13 3.48 6.24 -2.91 -0.02 3.46 16 28 H 0.34 9.46 9.06 -89.70 -0.81 8.65 16 29 H 0.34 11.28 7.28 -89.69 -0.65 10.63 16 30 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 31 H 0.01 0.52 6.45 -2.39 -0.02 0.50 16 32 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.98 5.04 -2.39 -0.01 1.97 16 35 H 0.09 1.88 5.92 -2.38 -0.01 1.86 16 Total: -1.00 -65.23 296.37 4.42 -60.81 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -0.33 Total: 17.95 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 3.54 Total: -25.41 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -0.81 Total: -99.67 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -65.23 4.42 -60.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260013721.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.984 kcal (2) G-P(sol) polarization free energy of solvation -65.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds