Wall clock time and date at job start Mon Mar 30 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46985 * 2 1 4 4 N 1.30116 * 124.95300 * 269.97925 * 3 2 1 5 5 C 1.35785 * 109.64494 * 180.02562 * 4 3 2 6 6 C 1.39737 * 133.59921 * 179.97438 * 5 4 3 7 7 C 1.36602 * 119.88530 * 179.97438 * 6 5 4 8 8 C 1.38776 * 120.66990 * 359.97438 * 7 6 5 9 9 C 1.37854 * 120.45113 * 0.06376 * 8 7 6 10 10 C 1.50702 * 120.15545 * 179.97438 * 9 8 7 11 11 C 1.38834 * 119.68726 * 359.91464 * 9 8 7 12 12 N 1.36035 * 124.95304 * 89.99926 * 3 2 1 13 13 C 1.46510 * 126.34653 * 0.23951 * 12 3 2 14 14 C 1.50700 * 109.47257 * 269.69100 * 13 12 3 15 15 H 1.07998 * 120.00090 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99994 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99854 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99970 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47154 * 60.00030 * 18 16 14 20 20 H 1.48502 * 109.47063 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47341 * 300.00001 * 18 16 14 22 22 H 1.09002 * 109.47065 * 60.00267 * 1 2 3 23 23 H 1.09000 * 109.47288 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47406 * 299.99807 * 1 2 3 25 25 H 1.08993 * 109.46969 * 240.00349 * 2 1 3 26 26 H 1.08995 * 109.47134 * 120.00130 * 2 1 3 27 27 H 1.08004 * 120.06003 * 0.02585 * 6 5 4 28 28 H 1.07995 * 119.66722 * 180.02562 * 7 6 5 29 29 H 1.07997 * 119.77646 * 180.02562 * 8 7 6 30 30 H 1.08992 * 109.47374 * 269.92482 * 10 9 8 31 31 H 1.08996 * 109.46901 * 29.93503 * 10 9 8 32 32 H 1.09011 * 109.47032 * 149.92543 * 10 9 8 33 33 H 1.09000 * 109.46444 * 29.69236 * 13 12 3 34 34 H 1.08996 * 109.46681 * 149.68582 * 13 12 3 35 35 H 0.96994 * 119.99904 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2811 2.1235 -1.0665 5 6 2.7181 3.3581 -0.7080 6 6 3.1178 4.4860 -1.4296 7 6 3.5157 5.6123 -0.7669 8 6 3.5273 5.6505 0.6203 9 6 3.1379 4.5495 1.3528 10 6 3.1536 4.5982 2.8590 11 6 2.7299 3.3961 0.6965 12 7 2.2921 2.1556 1.1150 13 6 2.1401 1.7111 2.5027 14 6 0.7493 2.0345 2.9844 15 1 0.0487 2.5227 2.3232 16 6 0.3712 1.7071 4.2692 17 7 1.2242 1.1121 5.0743 18 14 -1.3526 2.1086 4.8665 19 1 -2.3474 1.4126 4.0115 20 1 -1.5066 1.6579 6.2731 21 1 -1.5740 3.5749 4.7901 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.1115 4.4676 -2.5095 28 1 3.8235 6.4821 -1.3281 29 1 3.8441 6.5487 1.1294 30 1 4.1259 4.2665 3.2231 31 1 2.9702 5.6199 3.1914 32 1 2.3758 3.9432 3.2518 33 1 2.3032 0.6348 2.5593 34 1 2.8701 2.2226 3.1300 35 1 0.9584 0.8821 5.9783 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260015517.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:54 Heat of formation + Delta-G solvation = 34.437325 kcal Electronic energy + Delta-G solvation = -17668.070766 eV Core-core repulsion = 15051.195690 eV Total energy + Delta-G solvation = -2616.875076 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.01356 -38.52804 -36.24079 -34.41842 -34.28427 -32.52624 -29.67208 -29.50411 -27.42458 -25.26175 -24.95683 -23.01661 -21.85256 -20.37227 -18.80286 -18.14582 -17.59789 -16.56140 -16.23121 -16.18343 -15.23083 -14.93159 -14.76132 -14.47898 -14.25829 -14.17411 -13.99054 -13.26863 -13.21403 -13.02224 -12.83009 -12.61232 -12.33530 -12.25933 -12.11651 -12.03483 -11.94098 -11.75022 -10.91280 -10.87700 -10.67819 -9.09333 -8.79388 -8.32116 -6.49059 0.11511 0.74569 1.36625 1.37547 1.45546 1.88358 2.06083 2.33962 2.97076 3.00374 3.29169 3.69073 4.10614 4.12629 4.21288 4.35331 4.38410 4.45991 4.50516 4.69174 4.75350 4.80047 4.86208 4.94447 4.96930 4.98389 5.13205 5.32563 5.36493 5.44456 5.54383 5.64952 5.77679 5.81187 5.84484 6.13763 6.33901 6.63445 7.05824 7.21789 8.72573 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020534 B = 0.009277 C = 0.007204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.240457 B = 3017.635146 C = 3886.030141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.038 4.038 3 C 0.270 3.730 4 N -0.534 5.534 5 C 0.013 3.987 6 C -0.093 4.093 7 C -0.117 4.117 8 C -0.117 4.117 9 C -0.084 4.084 10 C -0.121 4.121 11 C 0.018 3.982 12 N -0.468 5.468 13 C 0.250 3.750 14 C -0.540 4.540 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.913 5.913 18 Si 0.956 3.044 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.274 1.274 22 H 0.054 0.946 23 H 0.091 0.909 24 H 0.040 0.960 25 H 0.111 0.889 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.165 0.835 29 H 0.157 0.843 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.036 0.964 34 H 0.040 0.960 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.435 4.278 -6.690 8.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.077 4.077 3 C 0.005 3.995 4 N -0.256 5.256 5 C -0.107 4.107 6 C -0.113 4.113 7 C -0.137 4.137 8 C -0.136 4.136 9 C -0.087 4.087 10 C -0.177 4.177 11 C -0.093 4.093 12 N -0.153 5.153 13 C 0.130 3.870 14 C -0.578 4.578 15 H 0.064 0.936 16 C -0.170 4.170 17 N -0.551 5.551 18 Si 0.781 3.219 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.199 1.199 22 H 0.073 0.927 23 H 0.109 0.891 24 H 0.059 0.941 25 H 0.130 0.870 26 H 0.100 0.900 27 H 0.156 0.844 28 H 0.183 0.817 29 H 0.174 0.826 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.356 3.861 -7.150 8.461 hybrid contribution -0.743 0.139 1.502 1.682 sum 1.613 4.000 -5.648 7.106 Atomic orbital electron populations 1.21645 0.93046 1.03330 1.01497 1.20171 0.97384 0.85639 1.04511 1.24107 0.97330 0.97141 0.80924 1.70308 1.23167 1.04056 1.28028 1.19635 1.05562 0.94590 0.90894 1.20199 1.00574 0.90429 1.00054 1.20942 1.00565 0.98140 0.94068 1.21104 1.00917 0.97320 0.94300 1.19240 1.01410 0.91557 0.96488 1.20932 1.02265 1.03595 0.90958 1.19290 1.05725 0.88895 0.95397 1.45887 1.50187 1.10216 1.09049 1.19477 0.97775 0.95718 0.73985 1.21191 0.97404 1.40878 0.98330 0.93642 1.25553 1.01195 0.94114 0.96108 1.69980 1.36667 1.40448 1.07976 0.85622 0.79786 0.78773 0.77710 1.19428 1.19977 1.19948 0.92731 0.89063 0.94100 0.87039 0.90020 0.84394 0.81738 0.82589 0.91634 0.89666 0.92047 0.94629 0.94167 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.89 71.98 0.71 -3.82 16 2 C -0.04 -1.33 6.23 29.85 0.19 -1.15 16 3 C 0.27 11.69 7.11 137.92 0.98 12.68 16 4 N -0.53 -23.50 11.27 -179.97 -2.03 -25.53 16 5 C 0.01 0.55 7.23 39.45 0.29 0.83 16 6 C -0.09 -3.14 10.05 22.25 0.22 -2.91 16 7 C -0.12 -3.25 9.96 22.02 0.22 -3.03 16 8 C -0.12 -3.52 9.69 22.31 0.22 -3.31 16 9 C -0.08 -3.26 5.89 -19.81 -0.12 -3.38 16 10 C -0.12 -4.52 8.93 71.24 0.64 -3.89 16 11 C 0.02 0.80 6.77 38.86 0.26 1.06 16 12 N -0.47 -21.88 2.79 -509.62 -1.42 -23.30 16 13 C 0.25 12.44 4.88 85.63 0.42 12.86 16 14 C -0.54 -28.40 8.06 25.60 0.21 -28.19 16 15 H 0.05 2.52 7.81 -2.91 -0.02 2.49 16 16 C 0.03 1.67 5.46 84.65 0.46 2.13 16 17 N -0.91 -49.17 13.29 21.45 0.28 -48.88 16 18 Si 0.96 41.48 29.54 68.60 2.03 43.51 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.04 1.61 7.77 -2.39 -0.02 1.59 16 25 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 26 H 0.08 2.86 7.00 -2.39 -0.02 2.84 16 27 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 28 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 29 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 30 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.08 2.64 8.09 -2.39 -0.02 2.62 16 32 H 0.06 2.78 4.91 -2.38 -0.01 2.77 16 33 H 0.04 1.82 6.99 -2.39 -0.02 1.81 16 34 H 0.04 2.10 5.93 -2.39 -0.01 2.08 16 35 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -62.16 291.92 4.64 -57.53 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 1.08 Total: 16.79 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 4.69 Total: -20.12 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -3.17 Total: -97.71 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -62.16 4.64 -57.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260015517.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.964 kcal (2) G-P(sol) polarization free energy of solvation -62.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds