Wall clock time and date at job start Mon Mar 30 2020 07:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38268 * 120.11431 * 2 1 4 4 C 1.37927 * 119.77144 * 180.14936 * 3 2 1 5 5 C 1.38914 * 120.54370 * 359.60280 * 4 3 2 6 6 C 1.37657 * 119.68478 * 0.33191 * 5 4 3 7 7 C 1.37932 * 120.11552 * 179.78941 * 2 1 3 8 8 C 1.50637 * 122.56480 * 179.60482 * 6 5 4 9 9 C 1.52738 * 110.58682 * 17.70479 * 8 6 5 10 10 C 1.53323 * 108.38567 * 308.91016 * 9 8 6 11 11 H 1.09007 * 109.67694 * 310.16048 * 10 9 8 12 12 C 1.50700 * 109.68037 * 189.60639 * 10 9 8 13 13 H 1.07997 * 119.99349 * 241.06991 * 12 10 9 14 14 C 1.37874 * 120.00234 * 61.07297 * 12 10 9 15 15 N 1.31514 * 120.00090 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00195 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46896 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47275 * 119.99979 * 16 14 12 19 19 H 1.48495 * 109.47425 * 240.00204 * 16 14 12 20 20 C 1.50632 * 117.74601 * 180.54311 * 5 4 3 21 21 C 1.52998 * 109.25469 * 317.76832 * 20 5 4 22 22 C 1.53003 * 109.25276 * 77.23756 * 20 5 4 23 23 H 1.09005 * 109.46889 * 270.20986 * 1 2 3 24 24 H 1.08997 * 109.47292 * 30.21319 * 1 2 3 25 25 H 1.08999 * 109.46802 * 150.21080 * 1 2 3 26 26 H 1.08003 * 120.11179 * 359.93308 * 3 2 1 27 27 H 1.08002 * 119.73040 * 179.88953 * 4 3 2 28 28 H 1.08003 * 119.72239 * 359.93373 * 7 2 1 29 29 H 1.09002 * 109.24875 * 257.42356 * 8 6 5 30 30 H 1.08995 * 109.22313 * 137.97536 * 8 6 5 31 31 H 1.08996 * 109.68022 * 189.17943 * 9 8 6 32 32 H 1.09007 * 109.70811 * 68.65040 * 9 8 6 33 33 H 0.96994 * 120.00584 * 179.97438 * 15 14 12 34 34 H 1.09003 * 109.47011 * 60.00623 * 21 20 5 35 35 H 1.08999 * 109.47209 * 179.97438 * 21 20 5 36 36 H 1.08996 * 109.47455 * 300.00371 * 21 20 5 37 37 H 1.09001 * 109.47125 * 60.00112 * 22 20 5 38 38 H 1.08997 * 109.46963 * 179.97438 * 22 20 5 39 39 H 1.08999 * 109.46879 * 299.99746 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1961 0.0000 4 6 3.5800 1.1878 -0.0031 5 6 4.2788 -0.0128 0.0020 6 6 3.5882 -1.2035 0.0034 7 6 2.1991 -1.1931 0.0044 8 6 4.2796 -2.5419 0.0001 9 6 5.7376 -2.3941 0.4303 10 6 6.3813 -1.2880 -0.4141 11 1 6.1738 -1.4643 -1.4696 12 6 7.8706 -1.2755 -0.1839 13 1 8.3461 -0.3968 0.2259 14 6 8.6259 -2.3857 -0.4967 15 7 8.0466 -3.4559 -0.9954 16 14 10.4720 -2.3699 -0.2121 17 1 10.8743 -1.0572 0.3538 18 1 10.8355 -3.4508 0.7391 19 1 11.1737 -2.5893 -1.5023 20 6 5.7837 0.0518 0.0108 21 6 6.2477 1.1411 -0.9582 22 6 6.2658 0.3934 1.4222 23 1 -0.3633 0.0038 1.0277 24 1 -0.3634 0.8880 -0.5171 25 1 -0.3633 -0.8919 -0.5106 26 1 1.6644 2.1335 -0.0011 27 1 4.1212 2.1224 -0.0049 28 1 1.6565 -2.1269 0.0089 29 1 4.2421 -2.9632 -1.0045 30 1 3.7673 -3.2121 0.6903 31 1 6.2652 -3.3340 0.2681 32 1 5.7841 -2.1246 1.4855 33 1 8.5780 -4.2369 -1.2158 34 1 5.8391 2.1025 -0.6468 35 1 7.3365 1.1912 -0.9543 36 1 5.8980 0.9061 -1.9634 37 1 5.9291 -0.3757 2.1173 38 1 7.3547 0.4406 1.4327 39 1 5.8570 1.3583 1.7221 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260018443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:52 Heat of formation + Delta-G solvation = -4.448097 kcal Electronic energy + Delta-G solvation = -18152.348174 eV Core-core repulsion = 15637.327243 eV Total energy + Delta-G solvation = -2515.020931 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85059 -36.70403 -33.30769 -32.72259 -31.14807 -29.10695 -26.83855 -26.38143 -25.83478 -23.76756 -22.21170 -20.74135 -19.89580 -17.70303 -16.13347 -15.35223 -15.16977 -14.42116 -14.30061 -13.73439 -13.46550 -13.14839 -12.83946 -12.69286 -12.43830 -12.32946 -11.97313 -11.73175 -11.34597 -11.14323 -10.98584 -10.83745 -10.74605 -10.52128 -10.43233 -10.28423 -10.15610 -9.77621 -9.42276 -8.81638 -8.55102 -8.28760 -8.15868 -7.78576 -5.95313 -3.99781 1.88109 1.91737 3.30803 3.39560 3.42313 4.24471 4.45991 5.17233 5.19682 5.34763 5.44752 5.52270 5.55936 5.71389 5.88559 5.92616 5.98852 5.99716 6.07681 6.18771 6.33529 6.37241 6.44165 6.49173 6.63551 6.72377 6.75978 6.81031 6.95024 6.98169 7.03189 7.15377 7.18057 7.25776 7.35141 7.56839 7.63240 7.79847 8.04074 8.14827 8.50472 9.02883 9.63842 11.10943 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.038853 B = 0.006858 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.483669 B = 4081.817861 C = 4545.898494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C -0.135 4.135 4 C -0.120 4.120 5 C -0.052 4.052 6 C -0.060 4.060 7 C -0.129 4.129 8 C -0.082 4.082 9 C -0.114 4.114 10 C 0.064 3.936 11 H 0.027 0.973 12 C -0.503 4.503 13 H 0.061 0.939 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.885 3.115 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.286 1.286 20 C -0.023 4.023 21 C -0.127 4.127 22 C -0.124 4.124 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.258 0.742 34 H 0.035 0.965 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.194 5.946 2.181 12.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.153 4.153 4 C -0.138 4.138 5 C -0.052 4.052 6 C -0.060 4.060 7 C -0.147 4.147 8 C -0.119 4.119 9 C -0.151 4.151 10 C 0.045 3.955 11 H 0.045 0.955 12 C -0.541 4.541 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.714 3.286 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.023 4.023 21 C -0.185 4.185 22 C -0.181 4.181 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.129 0.871 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -10.150 5.771 2.119 11.867 hybrid contribution 0.895 -0.092 0.091 0.904 sum -9.255 5.679 2.209 11.081 Atomic orbital electron populations 1.20697 0.92031 1.02038 1.01594 1.19675 0.95314 0.93441 1.02099 1.20793 0.94252 0.96858 1.03415 1.21216 0.93737 0.98001 1.00857 1.19942 0.96482 0.91723 0.97097 1.19913 0.92747 0.95803 0.97573 1.21012 0.93880 0.96999 1.02827 1.20614 0.98293 0.91973 1.01044 1.21698 0.91210 1.04109 0.98131 1.18660 0.94068 0.87473 0.95276 0.95457 1.21279 0.91886 0.99476 1.41444 0.92116 1.24953 0.98005 0.95776 0.95322 1.69897 1.35037 1.04005 1.44064 0.86643 0.86304 0.77946 0.77740 1.19847 1.21206 1.21215 1.19555 0.88233 0.99021 0.95456 1.21830 1.01835 0.96298 0.98488 1.21841 1.02008 0.98592 0.95661 0.91884 0.92154 0.92074 0.87128 0.86537 0.87008 0.91401 0.92873 0.88701 0.94451 0.93213 0.94569 0.91683 0.93630 0.93220 0.91211 0.95258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.02 36.01 0.36 -0.86 16 2 C -0.11 -1.59 5.87 -104.72 -0.61 -2.21 16 3 C -0.14 -2.07 9.71 -39.68 -0.39 -2.45 16 4 C -0.12 -2.04 8.90 -39.45 -0.35 -2.39 16 5 C -0.05 -1.01 4.70 -104.62 -0.49 -1.51 16 6 C -0.06 -1.16 5.74 -104.62 -0.60 -1.76 16 7 C -0.13 -2.16 9.27 -39.44 -0.37 -2.52 16 8 C -0.08 -1.65 5.67 -28.05 -0.16 -1.81 16 9 C -0.11 -2.64 5.10 -26.70 -0.14 -2.77 16 10 C 0.06 1.53 1.33 -91.74 -0.12 1.41 16 11 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 12 C -0.50 -13.08 7.13 -34.44 -0.25 -13.32 16 13 H 0.06 1.56 5.65 -52.49 -0.30 1.26 16 14 C 0.06 1.61 5.28 -17.82 -0.09 1.52 16 15 N -0.89 -24.89 11.40 55.43 0.63 -24.25 16 16 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 C -0.02 -0.46 0.41 -155.83 -0.06 -0.53 16 21 C -0.13 -2.43 7.83 37.16 0.29 -2.14 16 22 C -0.12 -2.42 7.80 37.16 0.29 -2.13 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 25 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 27 H 0.12 1.81 6.34 -52.49 -0.33 1.47 16 28 H 0.11 1.66 8.05 -52.48 -0.42 1.23 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 31 H 0.09 2.46 6.02 -51.93 -0.31 2.15 16 32 H 0.04 0.85 6.27 -51.92 -0.33 0.53 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.04 0.59 6.41 -51.93 -0.33 0.26 16 35 H 0.06 1.29 7.20 -51.93 -0.37 0.91 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.99 6.47 -51.93 -0.34 0.65 16 38 H 0.07 1.42 6.03 -51.93 -0.31 1.10 16 39 H 0.03 0.50 8.07 -51.93 -0.42 0.08 16 LS Contribution 296.70 15.07 4.47 4.47 Total: -1.00 -27.37 296.70 -8.58 -35.95 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.97 Total: 1.45 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: -2.69 Total: -33.47 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.63 Total: -24.25 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.37 -8.58 -35.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260018443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.504 kcal (2) G-P(sol) polarization free energy of solvation -27.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds