Wall clock time and date at job start Mon Mar 30 2020 07:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38268 * 120.11431 * 2 1 4 4 C 1.37927 * 119.77144 * 180.14936 * 3 2 1 5 5 C 1.38914 * 120.54370 * 359.60280 * 4 3 2 6 6 C 1.37657 * 119.68478 * 0.33191 * 5 4 3 7 7 C 1.37932 * 120.11552 * 179.78941 * 2 1 3 8 8 C 1.50637 * 122.56480 * 179.60482 * 6 5 4 9 9 C 1.52738 * 110.58682 * 17.70479 * 8 6 5 10 10 C 1.53323 * 108.38567 * 308.91016 * 9 8 6 11 11 H 1.09007 * 109.67694 * 310.16048 * 10 9 8 12 12 C 1.50700 * 109.68037 * 189.60639 * 10 9 8 13 13 H 1.07997 * 119.99349 * 241.06991 * 12 10 9 14 14 C 1.37874 * 120.00234 * 61.07297 * 12 10 9 15 15 N 1.31514 * 120.00090 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00195 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46896 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47275 * 119.99979 * 16 14 12 19 19 H 1.48495 * 109.47425 * 240.00204 * 16 14 12 20 20 C 1.50632 * 117.74601 * 180.54311 * 5 4 3 21 21 C 1.52998 * 109.25469 * 317.76832 * 20 5 4 22 22 C 1.53003 * 109.25276 * 77.23756 * 20 5 4 23 23 H 1.09005 * 109.46889 * 270.20986 * 1 2 3 24 24 H 1.08997 * 109.47292 * 30.21319 * 1 2 3 25 25 H 1.08999 * 109.46802 * 150.21080 * 1 2 3 26 26 H 1.08003 * 120.11179 * 359.93308 * 3 2 1 27 27 H 1.08002 * 119.73040 * 179.88953 * 4 3 2 28 28 H 1.08003 * 119.72239 * 359.93373 * 7 2 1 29 29 H 1.09002 * 109.24875 * 257.42356 * 8 6 5 30 30 H 1.08995 * 109.22313 * 137.97536 * 8 6 5 31 31 H 1.08996 * 109.68022 * 189.17943 * 9 8 6 32 32 H 1.09007 * 109.70811 * 68.65040 * 9 8 6 33 33 H 0.96994 * 120.00584 * 179.97438 * 15 14 12 34 34 H 1.09003 * 109.47011 * 60.00623 * 21 20 5 35 35 H 1.08999 * 109.47209 * 179.97438 * 21 20 5 36 36 H 1.08996 * 109.47455 * 300.00371 * 21 20 5 37 37 H 1.09001 * 109.47125 * 60.00112 * 22 20 5 38 38 H 1.08997 * 109.46963 * 179.97438 * 22 20 5 39 39 H 1.08999 * 109.46879 * 299.99746 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1961 0.0000 4 6 3.5800 1.1878 -0.0031 5 6 4.2788 -0.0128 0.0020 6 6 3.5882 -1.2035 0.0034 7 6 2.1991 -1.1931 0.0044 8 6 4.2796 -2.5419 0.0001 9 6 5.7376 -2.3941 0.4303 10 6 6.3813 -1.2880 -0.4141 11 1 6.1738 -1.4643 -1.4696 12 6 7.8706 -1.2755 -0.1839 13 1 8.3461 -0.3968 0.2259 14 6 8.6259 -2.3857 -0.4967 15 7 8.0466 -3.4559 -0.9954 16 14 10.4720 -2.3699 -0.2121 17 1 10.8743 -1.0572 0.3538 18 1 10.8355 -3.4508 0.7391 19 1 11.1737 -2.5893 -1.5023 20 6 5.7837 0.0518 0.0108 21 6 6.2477 1.1411 -0.9582 22 6 6.2658 0.3934 1.4222 23 1 -0.3633 0.0038 1.0277 24 1 -0.3634 0.8880 -0.5171 25 1 -0.3633 -0.8919 -0.5106 26 1 1.6644 2.1335 -0.0011 27 1 4.1212 2.1224 -0.0049 28 1 1.6565 -2.1269 0.0089 29 1 4.2421 -2.9632 -1.0045 30 1 3.7673 -3.2121 0.6903 31 1 6.2652 -3.3340 0.2681 32 1 5.7841 -2.1246 1.4855 33 1 8.5780 -4.2369 -1.2158 34 1 5.8391 2.1025 -0.6468 35 1 7.3365 1.1912 -0.9543 36 1 5.8980 0.9061 -1.9634 37 1 5.9291 -0.3757 2.1173 38 1 7.3547 0.4406 1.4327 39 1 5.8570 1.3583 1.7221 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260018443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:52 Heat of formation + Delta-G solvation = -16.392442 kcal Electronic energy + Delta-G solvation = -18152.866120 eV Core-core repulsion = 15637.327243 eV Total energy + Delta-G solvation = -2515.538876 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.29634 -38.18776 -34.94565 -34.46086 -32.55232 -30.61345 -28.44405 -27.96231 -27.22020 -25.54197 -23.64214 -22.27147 -21.41984 -19.30415 -18.09774 -16.91678 -16.60581 -16.05611 -15.79137 -15.23470 -14.72299 -14.66015 -14.37314 -14.23061 -13.93392 -13.76255 -13.26236 -13.15200 -12.91249 -12.77005 -12.57455 -12.49891 -12.28525 -12.22999 -12.05778 -11.89322 -11.68864 -11.55268 -11.25016 -10.58223 -10.40457 -10.28737 -9.48361 -9.12016 -8.01776 -6.12210 0.60082 0.61245 1.41083 1.44058 1.53809 2.47135 2.94661 3.26137 3.95219 3.97113 4.14297 4.21021 4.32629 4.37380 4.51879 4.60853 4.63477 4.69892 4.77843 4.90178 4.91441 4.94856 4.98441 5.06952 5.11342 5.15394 5.30222 5.35500 5.41346 5.46403 5.51523 5.53505 5.58657 5.68153 5.74668 5.81954 6.05393 6.10172 6.20627 6.29426 6.49978 6.98604 7.54196 9.03717 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.038853 B = 0.006858 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.483669 B = 4081.817861 C = 4545.898494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.101 4.101 3 C -0.131 4.131 4 C -0.124 4.124 5 C -0.078 4.078 6 C -0.087 4.087 7 C -0.136 4.136 8 C -0.074 4.074 9 C -0.107 4.107 10 C 0.065 3.935 11 H -0.015 1.015 12 C -0.509 4.509 13 H 0.063 0.937 14 C 0.009 3.991 15 N -0.921 5.921 16 Si 0.945 3.055 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.022 4.022 21 C -0.122 4.122 22 C -0.117 4.117 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.145 0.855 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.256 0.744 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.034 0.966 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.031 8.043 2.929 14.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.101 4.101 3 C -0.148 4.148 4 C -0.141 4.141 5 C -0.078 4.078 6 C -0.087 4.087 7 C -0.154 4.154 8 C -0.111 4.111 9 C -0.145 4.145 10 C 0.047 3.953 11 H 0.003 0.997 12 C -0.547 4.547 13 H 0.081 0.919 14 C -0.188 4.188 15 N -0.562 5.562 16 Si 0.772 3.228 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.022 4.022 21 C -0.179 4.179 22 C -0.174 4.174 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.163 0.837 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.988 7.881 2.871 14.631 hybrid contribution 1.385 -0.728 -0.156 1.572 sum -10.603 7.153 2.716 13.075 Atomic orbital electron populations 1.20767 0.89027 1.03432 1.02945 1.20140 0.97490 0.92647 0.99834 1.21208 0.93667 0.98408 1.01540 1.21375 0.94769 0.97434 1.00557 1.19897 0.95564 0.92995 0.99357 1.19890 0.94106 0.94864 0.99833 1.21198 0.92823 0.98708 1.02661 1.20447 0.96551 0.93760 1.00389 1.21498 0.93121 1.02097 0.97814 1.18544 0.93618 0.90307 0.92866 0.99720 1.21618 0.93197 0.99307 1.40579 0.91890 1.25695 1.02038 0.95639 0.95473 1.70047 1.36363 1.04524 1.45259 0.85692 0.81522 0.78148 0.77427 1.18862 1.21122 1.21238 1.19431 0.89623 0.97011 0.96108 1.21771 1.00973 0.97453 0.97727 1.21751 1.01098 0.99663 0.94869 0.90397 0.90307 0.91264 0.83735 0.84978 0.85542 0.93000 0.91208 0.92062 0.94652 0.93441 0.91322 0.93070 0.94671 0.94320 0.92570 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 10.02 71.24 0.71 -1.21 16 2 C -0.10 -2.69 5.87 -19.93 -0.12 -2.81 16 3 C -0.13 -3.46 9.71 22.20 0.22 -3.24 16 4 C -0.12 -3.84 8.90 22.36 0.20 -3.64 16 5 C -0.08 -2.95 4.70 -19.86 -0.09 -3.05 16 6 C -0.09 -3.31 5.74 -19.86 -0.11 -3.43 16 7 C -0.14 -4.28 9.27 22.36 0.21 -4.08 16 8 C -0.07 -3.09 5.67 29.74 0.17 -2.93 16 9 C -0.11 -5.22 5.10 30.62 0.16 -5.07 16 10 C 0.07 3.27 1.33 -11.52 -0.02 3.25 16 11 H -0.02 -0.89 8.08 -2.38 -0.02 -0.91 16 12 C -0.51 -27.33 7.13 25.60 0.18 -27.15 16 13 H 0.06 3.29 5.65 -2.91 -0.02 3.27 16 14 C 0.01 0.50 5.28 84.65 0.45 0.95 16 15 N -0.92 -53.78 11.40 21.45 0.24 -53.53 16 16 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 17 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 18 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 20 C -0.02 -0.89 0.41 -53.04 -0.02 -0.91 16 21 C -0.12 -4.60 7.83 71.98 0.56 -4.03 16 22 C -0.12 -4.49 7.80 71.98 0.56 -3.93 16 23 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 25 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 26 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 27 H 0.13 3.60 6.34 -2.91 -0.02 3.58 16 28 H 0.13 3.50 8.05 -2.91 -0.02 3.47 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 2.58 8.12 -2.39 -0.02 2.56 16 31 H 0.06 3.37 6.02 -2.39 -0.01 3.35 16 32 H 0.03 1.68 6.27 -2.38 -0.01 1.66 16 33 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.07 2.09 6.41 -2.39 -0.02 2.08 16 35 H 0.05 2.02 7.20 -2.39 -0.02 2.01 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.04 1.53 6.47 -2.39 -0.02 1.52 16 38 H 0.06 2.27 6.03 -2.39 -0.01 2.26 16 39 H 0.06 1.84 8.07 -2.39 -0.02 1.83 16 Total: -1.00 -61.04 296.70 6.35 -54.70 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.02 Total: 14.32 kcal Atomic # 6 Polarization: -64.33 SS G_CDS: 3.05 Total: -61.28 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.24 Total: -53.53 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -61.04 6.35 -54.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260018443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.303 kcal (2) G-P(sol) polarization free energy of solvation -61.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds