Wall clock time and date at job start Mon Mar 30 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36036 * 126.34911 * 2 1 4 4 N 1.30115 * 110.09898 * 179.81029 * 3 2 1 5 5 C 1.35790 * 109.64179 * 0.46367 * 4 3 2 6 6 C 1.39740 * 133.59896 * 179.72054 * 5 4 3 7 7 C 1.36602 * 119.88290 * 179.97438 * 6 5 4 8 8 C 1.38773 * 120.66992 * 0.02562 * 7 6 5 9 9 C 1.37846 * 120.45251 * 359.97438 * 8 7 6 10 10 C 1.50701 * 120.16007 * 180.02562 * 9 8 7 11 11 C 1.53011 * 109.46663 * 3.70976 * 10 9 8 12 12 C 1.52995 * 109.47439 * 123.70792 * 10 9 8 13 13 C 1.50699 * 109.47548 * 243.71396 * 10 9 8 14 14 H 1.08008 * 119.99650 * 359.70102 * 13 10 9 15 15 C 1.37880 * 120.00343 * 179.70750 * 13 10 9 16 16 N 1.31511 * 119.99843 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 120.00063 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.47328 * 89.99430 * 17 15 13 19 19 H 1.48497 * 109.47092 * 209.99835 * 17 15 13 20 20 H 1.48507 * 109.47037 * 329.99492 * 17 15 13 21 21 C 1.38058 * 126.35035 * 180.31535 * 2 1 3 22 22 H 1.09001 * 109.47415 * 271.41413 * 1 2 3 23 23 H 1.09003 * 109.47598 * 31.41249 * 1 2 3 24 24 H 1.08999 * 109.47553 * 151.41803 * 1 2 3 25 25 H 1.08001 * 124.95192 * 359.97438 * 3 2 1 26 26 H 1.08006 * 120.05742 * 0.02562 * 6 5 4 27 27 H 1.08000 * 119.66345 * 179.97438 * 7 6 5 28 28 H 1.08002 * 119.77521 * 179.97438 * 8 7 6 29 29 H 1.08992 * 109.47038 * 60.38561 * 11 10 9 30 30 H 1.08996 * 109.46691 * 180.38788 * 11 10 9 31 31 H 1.09004 * 109.46917 * 300.38633 * 11 10 9 32 32 H 1.09000 * 109.47387 * 34.89246 * 12 10 9 33 33 H 1.09002 * 109.47434 * 154.89648 * 12 10 9 34 34 H 1.09008 * 109.46902 * 274.89697 * 12 10 9 35 35 H 0.97002 * 120.00075 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2712 1.0957 0.0000 4 7 3.5204 0.7316 0.0040 5 6 3.6007 -0.6239 -0.0034 6 6 4.6680 -1.5260 -0.0083 7 6 4.4232 -2.8699 -0.0152 8 6 3.1221 -3.3524 -0.0180 9 6 2.0538 -2.4812 -0.0132 10 6 0.6435 -3.0124 -0.0157 11 6 0.6738 -4.5398 0.0698 12 6 -0.1157 -2.4493 1.1874 13 6 -0.0487 -2.5941 -1.2872 14 1 0.4782 -1.9986 -2.0182 15 6 -1.3547 -2.9714 -1.5175 16 7 -1.9962 -3.6968 -0.6276 17 14 -2.2130 -2.4523 -3.0933 18 1 -1.9920 -3.4824 -4.1398 19 1 -3.6690 -2.3086 -2.8397 20 1 -1.6600 -1.1530 -3.5532 21 6 2.2832 -1.1119 -0.0061 22 1 -0.3634 0.0254 1.0273 23 1 -0.3634 0.8770 -0.5356 24 1 -0.3634 -0.9024 -0.4916 25 1 1.9250 2.1187 -0.0004 26 1 5.6846 -1.1613 -0.0058 27 1 5.2507 -3.5639 -0.0194 28 1 2.9451 -4.4178 -0.0239 29 1 1.1684 -4.8423 0.9927 30 1 -0.3460 -4.9244 0.0611 31 1 1.2206 -4.9406 -0.7837 32 1 0.2203 -1.4314 1.3851 33 1 -1.1843 -2.4439 0.9726 34 1 0.0761 -3.0714 2.0617 35 1 -2.9149 -3.9626 -0.7897 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260039851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:45 Heat of formation + Delta-G solvation = 72.793130 kcal Electronic energy + Delta-G solvation = -18304.946004 eV Core-core repulsion = 15689.734161 eV Total energy + Delta-G solvation = -2615.211843 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.98845 -38.97401 -37.33323 -34.54369 -33.16995 -30.53013 -30.27530 -28.01409 -27.34441 -26.75145 -24.27803 -22.70715 -22.12628 -20.19150 -18.25522 -17.79228 -17.30876 -16.85724 -16.55932 -16.25789 -15.15153 -14.92417 -14.80685 -14.40452 -14.06489 -13.76752 -13.27386 -13.08887 -12.99653 -12.90158 -12.57134 -12.35283 -12.23979 -12.05636 -11.94666 -11.51325 -11.45959 -11.02324 -10.72651 -10.60477 -10.34042 -9.11771 -8.66644 -8.05137 -6.18734 0.26668 0.80535 1.39337 1.45692 1.51143 2.01621 2.05966 2.41007 3.09940 3.16495 3.53300 3.89040 4.21049 4.27892 4.32036 4.53836 4.63024 4.67313 4.79165 4.82629 4.95941 5.00405 5.09371 5.18493 5.33906 5.41424 5.46234 5.56142 5.63040 5.73684 5.80512 5.86945 6.10870 6.17395 6.23119 6.42506 6.48744 6.80294 7.04937 7.41682 8.90865 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.010154 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.722248 B = 2756.881596 C = 3289.911930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.477 5.477 3 C 0.247 3.753 4 N -0.536 5.536 5 C 0.012 3.988 6 C -0.106 4.106 7 C -0.116 4.116 8 C -0.143 4.143 9 C -0.044 4.044 10 C 0.090 3.910 11 C -0.123 4.123 12 C -0.132 4.132 13 C -0.501 4.501 14 H 0.038 0.962 15 C 0.037 3.963 16 N -0.889 5.889 17 Si 0.935 3.065 18 H -0.285 1.285 19 H -0.279 1.279 20 H -0.271 1.271 21 C 0.036 3.964 22 H 0.073 0.927 23 H 0.092 0.908 24 H 0.136 0.864 25 H 0.250 0.750 26 H 0.137 0.863 27 H 0.155 0.845 28 H 0.134 0.866 29 H 0.027 0.973 30 H 0.064 0.936 31 H 0.029 0.971 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.013 0.987 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 4.548 1.673 6.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.165 5.165 3 C -0.038 4.038 4 N -0.257 5.257 5 C -0.107 4.107 6 C -0.125 4.125 7 C -0.136 4.136 8 C -0.163 4.163 9 C -0.046 4.046 10 C 0.089 3.911 11 C -0.181 4.181 12 C -0.189 4.189 13 C -0.538 4.538 14 H 0.056 0.944 15 C -0.164 4.164 16 N -0.527 5.527 17 Si 0.761 3.239 18 H -0.211 1.211 19 H -0.204 1.204 20 H -0.196 1.196 21 C -0.074 4.074 22 H 0.091 0.909 23 H 0.110 0.890 24 H 0.153 0.847 25 H 0.266 0.734 26 H 0.155 0.845 27 H 0.172 0.828 28 H 0.152 0.848 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.032 0.968 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.574 5.005 1.724 6.996 hybrid contribution -1.410 -0.353 -0.836 1.676 sum 3.165 4.652 0.888 5.696 Atomic orbital electron populations 1.23439 0.75183 1.09132 1.03773 1.45359 1.08216 1.04992 1.57908 1.26063 0.84910 0.94765 0.98101 1.70356 1.19662 1.10871 1.24806 1.19499 0.93057 0.90871 1.07248 1.20086 0.97133 0.91863 1.03442 1.20879 0.96957 0.94862 1.00865 1.21159 0.91897 0.99915 1.03342 1.19711 0.97911 0.89280 0.97731 1.17241 0.86802 0.92829 0.94187 1.21784 1.01667 0.97469 0.97164 1.22209 1.02692 0.98215 0.95789 1.20916 0.96954 1.32763 1.03183 0.94404 1.25395 0.97748 0.95006 0.98289 1.69944 1.11684 1.36182 1.34883 0.85918 0.78151 0.78729 0.81067 1.21106 1.20448 1.19619 1.18968 0.90993 0.89873 1.07540 0.90893 0.88958 0.84658 0.73385 0.84527 0.82765 0.84810 0.95422 0.91695 0.95229 0.93926 0.91245 0.96814 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.85 8.84 127.77 1.13 1.98 16 2 N -0.48 -17.90 3.06 -543.66 -1.67 -19.57 16 3 C 0.25 8.04 12.50 180.05 2.25 10.29 16 4 N -0.54 -20.52 11.27 -192.03 -2.17 -22.68 16 5 C 0.01 0.47 7.23 39.45 0.29 0.76 16 6 C -0.11 -3.75 10.05 22.25 0.22 -3.53 16 7 C -0.12 -3.83 9.96 22.01 0.22 -3.61 16 8 C -0.14 -5.52 8.99 22.30 0.20 -5.32 16 9 C -0.04 -1.91 4.70 -19.81 -0.09 -2.01 16 10 C 0.09 4.11 0.48 -53.67 -0.03 4.09 16 11 C -0.12 -5.57 6.79 71.99 0.49 -5.08 16 12 C -0.13 -5.86 7.25 71.98 0.52 -5.34 16 13 C -0.50 -24.50 4.71 25.60 0.12 -24.38 16 14 H 0.04 1.97 7.69 -2.91 -0.02 1.95 16 15 C 0.04 1.79 4.82 84.66 0.41 2.20 16 16 N -0.89 -44.46 9.49 21.45 0.20 -44.26 16 17 Si 0.93 39.49 29.54 68.60 2.03 41.52 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 C 0.04 1.53 5.92 38.86 0.23 1.76 16 22 H 0.07 2.36 6.71 -2.39 -0.02 2.35 16 23 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 24 H 0.14 5.69 2.74 -2.39 -0.01 5.69 16 25 H 0.25 5.17 8.06 -2.91 -0.02 5.14 16 26 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 27 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 28 H 0.13 4.82 5.89 -2.91 -0.02 4.80 16 29 H 0.03 1.12 7.68 -2.39 -0.02 1.11 16 30 H 0.06 3.20 6.04 -2.39 -0.01 3.19 16 31 H 0.03 1.29 7.32 -2.38 -0.02 1.27 16 32 H 0.04 1.77 3.56 -2.39 -0.01 1.76 16 33 H 0.07 3.30 5.88 -2.39 -0.01 3.29 16 34 H 0.01 0.57 7.88 -2.38 -0.02 0.55 16 35 H 0.26 12.72 8.31 -92.71 -0.77 11.95 16 Total: -1.00 -58.17 268.94 5.46 -52.71 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 1.11 Total: 20.48 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 5.96 Total: -28.20 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -3.63 Total: -86.51 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -58.17 5.46 -52.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.503 kcal (2) G-P(sol) polarization free energy of solvation -58.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds