Wall clock time and date at job start Mon Mar 30 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37785 * 120.11195 * 2 1 4 4 C 1.38790 * 120.66969 * 179.97438 * 3 2 1 5 5 C 1.36662 * 120.52971 * 0.02866 * 4 3 2 6 6 C 1.39600 * 119.75953 * 359.97188 * 5 4 3 7 7 C 1.46487 * 134.03086 * 179.97438 * 6 5 4 8 8 C 1.50699 * 126.50621 * 0.02562 * 7 6 5 9 9 H 1.09000 * 109.46916 * 0.02562 * 8 7 6 10 10 C 1.50706 * 109.46824 * 119.99745 * 8 7 6 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 8 7 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 8 7 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 8 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.52997 * 109.47592 * 240.00227 * 8 7 6 19 19 N 1.46898 * 109.46971 * 64.99921 * 18 8 7 20 20 C 1.34237 * 106.99646 * 180.28562 * 7 6 5 21 21 N 1.36835 * 109.93683 * 359.56854 * 20 7 6 22 22 H 0.97006 * 125.06253 * 180.18529 * 21 20 7 23 23 C 1.37689 * 109.87673 * 0.44770 * 21 20 7 24 24 H 1.09001 * 109.46692 * 90.00059 * 1 2 3 25 25 H 1.08999 * 109.46908 * 209.99742 * 1 2 3 26 26 H 1.08995 * 109.47379 * 330.00101 * 1 2 3 27 27 H 1.08006 * 119.66958 * 359.95401 * 3 2 1 28 28 H 1.08002 * 119.74248 * 180.02562 * 4 3 2 29 29 H 1.07994 * 120.12659 * 179.97438 * 5 4 3 30 30 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 31 31 H 1.08994 * 109.47065 * 184.99770 * 18 8 7 32 32 H 1.09001 * 109.47096 * 304.99929 * 18 8 7 33 33 H 1.00903 * 111.00197 * 56.04277 * 19 18 8 34 34 H 1.00896 * 111.00046 * 180.02562 * 19 18 8 35 35 H 1.08002 * 125.03184 * 179.73442 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1919 0.0000 4 6 3.5861 1.2054 0.0005 5 6 4.2917 0.0351 0.0005 6 6 3.6117 -1.1841 0.0005 7 6 4.0354 -2.5863 0.0000 8 6 5.4543 -3.0941 -0.0002 9 1 6.1426 -2.2489 0.0005 10 6 5.6879 -3.9326 1.2300 11 1 4.8887 -4.0832 1.9407 12 6 6.9219 -4.5076 1.4482 13 7 7.1256 -5.2397 2.5215 14 14 8.3045 -4.2466 0.2195 15 1 8.2631 -5.3186 -0.8073 16 1 8.1397 -2.9251 -0.4377 17 1 9.6096 -4.2885 0.9266 18 6 5.6916 -3.9445 -1.2497 19 7 5.5814 -3.0988 -2.4458 20 6 2.9201 -3.3333 -0.0061 21 7 1.8166 -2.5242 0.0001 22 1 0.8977 -2.8350 0.0001 23 6 2.2047 -1.2032 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6546 2.1252 -0.0008 28 1 4.1127 2.1483 0.0009 29 1 5.3715 0.0532 0.0005 30 1 7.9937 -5.6446 2.6749 31 1 6.6880 -4.3841 -1.2062 32 1 4.9460 -4.7382 -1.2960 33 1 6.2184 -2.3178 -2.3965 34 1 5.7338 -3.6377 -3.2850 35 1 2.8972 -4.4131 -0.0122 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260050630.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:33 Heat of formation + Delta-G solvation = 52.623895 kcal Electronic energy + Delta-G solvation = -17382.288055 eV Core-core repulsion = 14766.201609 eV Total energy + Delta-G solvation = -2616.086447 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.66663 -36.71235 -35.42767 -32.71774 -32.30534 -30.28546 -28.80293 -27.15919 -26.40521 -23.49008 -21.83172 -21.44475 -21.12830 -17.87054 -17.25237 -16.83724 -15.46482 -15.12343 -14.87135 -14.56446 -14.09510 -13.82643 -13.29864 -13.06786 -12.91556 -12.76046 -12.72250 -12.21520 -11.84529 -11.41243 -11.13131 -10.98968 -10.89327 -10.70769 -10.18745 -10.02693 -9.70542 -9.27525 -8.68631 -8.60126 -7.87719 -7.58097 -6.78622 -6.09453 -4.08461 1.67738 2.18611 3.20833 3.31280 3.34870 3.56529 3.76371 4.35948 4.46645 5.12893 5.16993 5.23298 5.41649 5.45522 5.56218 5.69028 5.69674 5.84006 5.99301 6.02028 6.19945 6.35278 6.37642 6.46064 6.62456 6.71533 6.84715 6.97699 7.13414 7.33626 7.41527 7.58645 7.69278 7.85974 7.89337 8.06799 8.21179 8.54726 8.97720 9.51706 11.03336 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030318 B = 0.007031 C = 0.006827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.312447 B = 3981.216680 C = 4100.185499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.109 4.109 3 C -0.112 4.112 4 C -0.160 4.160 5 C -0.064 4.064 6 C -0.093 4.093 7 C -0.083 4.083 8 C 0.081 3.919 9 H 0.031 0.969 10 C -0.504 4.504 11 H 0.077 0.923 12 C 0.069 3.931 13 N -0.898 5.898 14 Si 0.889 3.111 15 H -0.282 1.282 16 H -0.269 1.269 17 H -0.297 1.297 18 C 0.062 3.938 19 N -0.847 5.847 20 C 0.030 3.970 21 N -0.600 5.600 22 H 0.405 0.595 23 C 0.097 3.903 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.264 0.736 31 H 0.014 0.986 32 H 0.066 0.934 33 H 0.331 0.669 34 H 0.323 0.677 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.071 8.146 -7.455 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.112 4.112 3 C -0.131 4.131 4 C -0.179 4.179 5 C -0.082 4.082 6 C -0.099 4.099 7 C -0.089 4.089 8 C 0.062 3.938 9 H 0.049 0.951 10 C -0.543 4.543 11 H 0.095 0.905 12 C -0.133 4.133 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.210 1.210 16 H -0.194 1.194 17 H -0.225 1.225 18 C -0.068 4.068 19 N -0.375 5.375 20 C -0.093 4.093 21 N -0.204 5.204 22 H 0.241 0.759 23 C -0.011 4.011 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.134 0.866 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.794 8.042 -7.093 14.523 hybrid contribution 1.472 -0.505 -0.714 1.712 sum -8.322 7.537 -7.807 13.675 Atomic orbital electron populations 1.20614 0.92133 1.01949 1.01456 1.18715 0.94656 0.90499 1.07332 1.20491 0.94088 0.95820 1.02687 1.20437 0.93877 0.97428 1.06208 1.20268 0.99392 0.90760 0.97808 1.19244 0.91590 0.93866 1.05162 1.20284 0.95379 0.89182 1.04093 1.17688 0.88666 0.94770 0.92718 0.95080 1.21049 0.98519 1.29596 1.05103 0.90472 1.25040 0.98263 0.94761 0.95207 1.69889 1.23704 1.33375 1.26700 0.86831 0.81521 0.78766 0.80928 1.20956 1.19388 1.22456 1.22402 0.98038 0.95980 0.90347 1.58885 1.60788 1.13409 1.04412 1.21441 0.84792 0.95971 1.07051 1.41609 1.08053 1.03925 1.66778 0.75942 1.18019 0.93864 0.84608 1.04644 0.91983 0.92759 0.91780 0.86799 0.86910 0.86591 0.92644 0.96880 0.91504 0.85729 0.86606 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.02 36.00 0.36 -0.85 16 2 C -0.11 -1.68 5.89 -104.47 -0.62 -2.30 16 3 C -0.11 -1.65 9.67 -39.54 -0.38 -2.03 16 4 C -0.16 -2.51 9.97 -39.95 -0.40 -2.91 16 5 C -0.06 -1.18 10.05 -39.64 -0.40 -1.58 16 6 C -0.09 -1.89 6.35 -105.14 -0.67 -2.56 16 7 C -0.08 -1.79 4.72 -102.71 -0.49 -2.28 16 8 C 0.08 1.91 1.90 -92.92 -0.18 1.73 16 9 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 10 C -0.50 -13.87 8.99 -34.44 -0.31 -14.18 16 11 H 0.08 2.32 7.96 -52.49 -0.42 1.91 16 12 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 13 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 14 Si 0.89 21.58 24.41 -169.99 -4.15 17.44 16 15 H -0.28 -6.69 6.83 56.52 0.39 -6.30 16 16 H -0.27 -6.22 6.53 56.52 0.37 -5.85 16 17 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 18 C 0.06 1.32 5.61 -3.83 -0.02 1.30 16 19 N -0.85 -15.29 9.34 -10.37 -0.10 -15.39 16 20 C 0.03 0.58 11.14 -16.73 -0.19 0.40 16 21 N -0.60 -9.89 6.07 -10.65 -0.06 -9.95 16 22 H 0.41 5.17 8.87 -40.82 -0.36 4.81 16 23 C 0.10 1.74 6.95 -83.99 -0.58 1.15 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.59 7.99 -51.93 -0.42 0.17 16 26 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 28 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.01 0.30 3.22 -51.93 -0.17 0.14 16 32 H 0.07 1.40 7.87 -51.93 -0.41 0.99 16 33 H 0.33 5.80 8.99 -39.29 -0.35 5.44 16 34 H 0.32 4.98 9.08 -39.29 -0.36 4.63 16 35 H 0.16 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 288.91 15.07 4.35 4.35 Total: -1.00 -31.29 288.91 -7.72 -39.01 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -4.57 Total: 13.08 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.96 Total: -22.25 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.61 Total: -51.62 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.15 Total: 17.44 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.29 -7.72 -39.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260050630.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.631 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds