Wall clock time and date at job start Mon Mar 30 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37785 * 120.11195 * 2 1 4 4 C 1.38790 * 120.66969 * 179.97438 * 3 2 1 5 5 C 1.36662 * 120.52971 * 0.02866 * 4 3 2 6 6 C 1.39600 * 119.75953 * 359.97188 * 5 4 3 7 7 C 1.46487 * 134.03086 * 179.97438 * 6 5 4 8 8 C 1.50699 * 126.50621 * 0.02562 * 7 6 5 9 9 H 1.09000 * 109.46916 * 0.02562 * 8 7 6 10 10 C 1.50706 * 109.46824 * 119.99745 * 8 7 6 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 8 7 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 8 7 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 8 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.52997 * 109.47592 * 240.00227 * 8 7 6 19 19 N 1.46898 * 109.46971 * 64.99921 * 18 8 7 20 20 C 1.34237 * 106.99646 * 180.28562 * 7 6 5 21 21 N 1.36835 * 109.93683 * 359.56854 * 20 7 6 22 22 H 0.97006 * 125.06253 * 180.18529 * 21 20 7 23 23 C 1.37689 * 109.87673 * 0.44770 * 21 20 7 24 24 H 1.09001 * 109.46692 * 90.00059 * 1 2 3 25 25 H 1.08999 * 109.46908 * 209.99742 * 1 2 3 26 26 H 1.08995 * 109.47379 * 330.00101 * 1 2 3 27 27 H 1.08006 * 119.66958 * 359.95401 * 3 2 1 28 28 H 1.08002 * 119.74248 * 180.02562 * 4 3 2 29 29 H 1.07994 * 120.12659 * 179.97438 * 5 4 3 30 30 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 31 31 H 1.08994 * 109.47065 * 184.99770 * 18 8 7 32 32 H 1.09001 * 109.47096 * 304.99929 * 18 8 7 33 33 H 1.00903 * 111.00197 * 56.04277 * 19 18 8 34 34 H 1.00896 * 111.00046 * 180.02562 * 19 18 8 35 35 H 1.08002 * 125.03184 * 179.73442 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1919 0.0000 4 6 3.5861 1.2054 0.0005 5 6 4.2917 0.0351 0.0005 6 6 3.6117 -1.1841 0.0005 7 6 4.0354 -2.5863 0.0000 8 6 5.4543 -3.0941 -0.0002 9 1 6.1426 -2.2489 0.0005 10 6 5.6879 -3.9326 1.2300 11 1 4.8887 -4.0832 1.9407 12 6 6.9219 -4.5076 1.4482 13 7 7.1256 -5.2397 2.5215 14 14 8.3045 -4.2466 0.2195 15 1 8.2631 -5.3186 -0.8073 16 1 8.1397 -2.9251 -0.4377 17 1 9.6096 -4.2885 0.9266 18 6 5.6916 -3.9445 -1.2497 19 7 5.5814 -3.0988 -2.4458 20 6 2.9201 -3.3333 -0.0061 21 7 1.8166 -2.5242 0.0001 22 1 0.8977 -2.8350 0.0001 23 6 2.2047 -1.2032 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6546 2.1252 -0.0008 28 1 4.1127 2.1483 0.0009 29 1 5.3715 0.0532 0.0005 30 1 7.9937 -5.6446 2.6749 31 1 6.6880 -4.3841 -1.2062 32 1 4.9460 -4.7382 -1.2960 33 1 6.2184 -2.3178 -2.3965 34 1 5.7338 -3.6377 -3.2850 35 1 2.8972 -4.4131 -0.0122 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260050630.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:33 Heat of formation + Delta-G solvation = 30.553654 kcal Electronic energy + Delta-G solvation = -17383.245093 eV Core-core repulsion = 14766.201609 eV Total energy + Delta-G solvation = -2617.043484 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.02829 -38.07311 -37.06147 -34.34878 -33.94864 -31.86200 -30.17802 -28.77690 -27.50297 -25.43075 -23.46881 -22.73451 -22.48349 -19.46555 -18.90068 -18.53819 -16.96023 -16.81470 -16.28221 -16.04027 -15.39053 -15.09479 -15.04837 -14.83250 -14.54782 -14.16314 -13.85607 -13.43119 -13.21070 -13.00124 -12.83453 -12.51850 -12.19405 -12.14022 -11.90850 -11.76881 -11.37173 -11.34044 -10.77594 -10.03958 -9.41784 -8.91816 -8.29955 -8.18008 -6.31918 0.37658 0.89532 1.25977 1.33134 1.42726 2.07723 2.30318 2.46012 3.04827 3.14383 3.88410 3.98519 4.05529 4.23091 4.36650 4.40414 4.53615 4.58922 4.68284 4.84573 4.86106 4.89912 4.97429 5.08466 5.18442 5.31130 5.38048 5.60003 5.63248 5.80242 5.85974 6.00456 6.16443 6.28298 6.38407 6.49096 6.67221 6.80312 6.94943 7.32169 8.87751 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030318 B = 0.007031 C = 0.006827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.312447 B = 3981.216680 C = 4100.185499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.108 4.108 3 C -0.112 4.112 4 C -0.151 4.151 5 C -0.096 4.096 6 C -0.127 4.127 7 C -0.124 4.124 8 C 0.089 3.911 9 H 0.017 0.983 10 C -0.504 4.504 11 H 0.034 0.966 12 C 0.013 3.987 13 N -0.947 5.947 14 Si 0.952 3.048 15 H -0.268 1.268 16 H -0.252 1.252 17 H -0.300 1.300 18 C 0.073 3.927 19 N -0.841 5.841 20 C 0.034 3.966 21 N -0.586 5.586 22 H 0.423 0.577 23 C 0.082 3.918 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.152 0.848 28 H 0.141 0.859 29 H 0.107 0.893 30 H 0.265 0.735 31 H 0.003 0.997 32 H 0.065 0.935 33 H 0.337 0.663 34 H 0.343 0.657 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.495 10.122 -9.305 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.111 4.111 3 C -0.131 4.131 4 C -0.170 4.170 5 C -0.115 4.115 6 C -0.132 4.132 7 C -0.131 4.131 8 C 0.069 3.931 9 H 0.035 0.965 10 C -0.542 4.542 11 H 0.053 0.947 12 C -0.184 4.184 13 N -0.588 5.588 14 Si 0.780 3.220 15 H -0.194 1.194 16 H -0.176 1.176 17 H -0.228 1.228 18 C -0.057 4.057 19 N -0.370 5.370 20 C -0.091 4.091 21 N -0.191 5.191 22 H 0.262 0.738 23 C -0.026 4.026 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.170 0.830 28 H 0.159 0.841 29 H 0.125 0.875 30 H 0.074 0.926 31 H 0.021 0.979 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.263 10.034 -8.975 17.552 hybrid contribution 1.777 -1.025 -0.083 2.053 sum -9.486 9.009 -9.058 15.912 Atomic orbital electron populations 1.20690 0.89099 1.03341 1.02822 1.19237 0.96924 0.89555 1.05402 1.20989 0.93834 0.97190 1.01042 1.20812 0.94732 0.97481 1.03988 1.20407 0.99386 0.91508 1.00216 1.19478 0.93204 0.93706 1.06832 1.20217 0.94842 0.90787 1.07224 1.17446 0.90149 0.93611 0.91854 0.96476 1.21262 0.97356 1.29663 1.05963 0.94749 1.25856 1.00979 0.94490 0.97073 1.70041 1.24527 1.35167 1.29045 0.85790 0.77663 0.79815 0.78743 1.19404 1.17634 1.22803 1.22087 0.97274 0.95714 0.90674 1.58721 1.61042 1.13256 1.04004 1.21492 0.85312 0.96319 1.05984 1.41474 1.08331 1.03348 1.65904 0.73808 1.18341 0.93345 0.85716 1.05207 0.90469 0.92237 0.89636 0.82994 0.84141 0.87459 0.92584 0.97907 0.91631 0.85114 0.84463 0.81509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 10.02 71.23 0.71 -1.24 16 2 C -0.11 -3.01 5.89 -19.77 -0.12 -3.13 16 3 C -0.11 -2.88 9.67 22.29 0.22 -2.67 16 4 C -0.15 -4.40 9.97 22.03 0.22 -4.18 16 5 C -0.10 -3.55 10.05 22.23 0.22 -3.32 16 6 C -0.13 -5.17 6.35 -20.20 -0.13 -5.30 16 7 C -0.12 -5.46 4.72 -18.63 -0.09 -5.55 16 8 C 0.09 4.28 1.90 -12.29 -0.02 4.25 16 9 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 10 C -0.50 -28.94 8.99 25.60 0.23 -28.71 16 11 H 0.03 2.20 7.96 -2.91 -0.02 2.18 16 12 C 0.01 0.75 5.45 84.66 0.46 1.22 16 13 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 14 Si 0.95 45.16 24.41 68.60 1.67 46.84 16 15 H -0.27 -12.01 6.83 99.48 0.68 -11.33 16 16 H -0.25 -11.16 6.53 99.48 0.65 -10.51 16 17 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 18 C 0.07 3.07 5.61 86.30 0.48 3.55 16 19 N -0.84 -29.15 9.34 -186.73 -1.74 -30.89 16 20 C 0.03 1.30 11.14 83.00 0.92 2.23 16 21 N -0.59 -18.74 6.07 -187.61 -1.14 -19.88 16 22 H 0.42 10.08 8.87 -92.70 -0.82 9.25 16 23 C 0.08 2.84 6.95 39.03 0.27 3.11 16 24 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.07 7.99 -2.39 -0.02 1.05 16 26 H 0.08 1.28 8.09 -2.39 -0.02 1.27 16 27 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 28 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 29 H 0.11 3.94 8.06 -2.91 -0.02 3.92 16 30 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 31 H 0.00 0.15 3.22 -2.39 -0.01 0.14 16 32 H 0.07 2.74 7.87 -2.39 -0.02 2.72 16 33 H 0.34 11.28 8.99 -89.69 -0.81 10.47 16 34 H 0.34 9.79 9.08 -89.70 -0.81 8.98 16 35 H 0.17 6.09 8.06 -2.91 -0.02 6.07 16 Total: -1.00 -70.27 288.91 1.08 -69.19 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -1.40 Total: 33.45 kcal Atomic # 6 Polarization: -43.12 SS G_CDS: 3.39 Total: -39.73 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -2.58 Total: -109.74 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.67 Total: 46.84 kcal Total: -70.27 1.08 -69.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260050630.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.742 kcal (2) G-P(sol) polarization free energy of solvation -70.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds