Wall clock time and date at job start Mon Mar 30 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47203 * 2 1 4 4 C 1.38970 * 125.37396 * 264.57767 * 3 2 1 5 5 C 1.40906 * 126.93442 * 359.95735 * 4 3 2 6 6 H 1.08001 * 119.99811 * 133.29531 * 5 4 3 7 7 C 1.39677 * 120.00132 * 313.30591 * 5 4 3 8 8 N 1.31075 * 120.00479 * 156.03737 * 7 5 4 9 9 Si 1.86805 * 119.99899 * 336.03106 * 7 5 4 10 10 H 1.48500 * 109.47002 * 95.20106 * 9 7 5 11 11 H 1.48490 * 109.47194 * 215.20632 * 9 7 5 12 12 H 1.48503 * 109.46889 * 335.20735 * 9 7 5 13 13 C 1.47569 * 106.13191 * 179.97438 * 4 3 2 14 14 C 1.40266 * 106.11447 * 0.02959 * 13 4 3 15 15 C 1.39164 * 119.35043 * 180.02562 * 14 13 4 16 16 C 1.37985 * 120.13217 * 359.96444 * 15 14 13 17 17 C 1.38451 * 120.70866 * 359.97438 * 16 15 14 18 18 C 1.38731 * 120.15442 * 0.02665 * 17 16 15 19 19 N 1.39399 * 120.23207 * 179.72255 * 18 17 16 20 20 N 1.35661 * 125.38389 * 84.63952 * 3 2 1 21 21 C 1.46506 * 124.69030 * 359.97438 * 20 3 2 22 22 H 1.09000 * 109.47320 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47453 * 300.00502 * 1 2 3 24 24 H 1.09000 * 109.46982 * 60.00899 * 1 2 3 25 25 H 1.09000 * 109.47810 * 239.99367 * 2 1 3 26 26 H 1.09000 * 109.46982 * 119.99101 * 2 1 3 27 27 H 0.97002 * 120.00585 * 179.97438 * 8 7 5 28 28 H 1.07999 * 119.93122 * 179.97438 * 15 14 13 29 29 H 1.08000 * 119.64553 * 180.02562 * 16 15 14 30 30 H 1.07996 * 119.92406 * 180.02562 * 17 16 15 31 31 H 0.97001 * 119.99947 * 354.38440 * 19 18 17 32 32 H 0.96996 * 120.00585 * 174.39286 * 19 18 17 33 33 H 1.08997 * 109.46958 * 270.10222 * 21 20 3 34 34 H 1.09001 * 109.47434 * 30.10587 * 21 20 3 35 35 H 1.08999 * 109.46725 * 150.10552 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4014 2.1436 -1.1281 5 6 2.3791 1.6973 -2.4644 6 1 1.9522 2.3219 -3.2352 7 6 2.9087 0.4471 -2.7922 8 7 2.4989 -0.1763 -3.8699 9 14 4.2014 -0.3365 -1.6947 10 1 3.5437 -1.2646 -0.7402 11 1 5.1696 -1.0903 -2.5308 12 1 4.9184 0.7229 -0.9404 13 6 2.8219 3.4727 -0.6440 14 6 2.6720 3.4445 0.7504 15 6 2.9958 4.5752 1.4942 16 6 3.4602 5.7105 0.8622 17 6 3.6109 5.7423 -0.5137 18 6 3.2943 4.6268 -1.2754 19 7 3.4399 4.6589 -2.6614 20 7 2.1967 2.1959 1.1012 21 6 1.9085 1.7682 2.4725 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 2.8669 -1.0444 -4.0977 28 1 2.8836 4.5640 2.5683 29 1 3.7096 6.5835 1.4472 30 1 3.9759 6.6374 -0.9952 31 1 3.6851 5.4863 -3.1042 32 1 3.2960 3.8539 -3.1830 33 1 0.8720 2.0019 2.7156 34 1 2.0686 0.6935 2.5592 35 1 2.5704 2.2911 3.1628 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260066845.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:52 Heat of formation + Delta-G solvation = 48.607341 kcal Electronic energy + Delta-G solvation = -17922.928416 eV Core-core repulsion = 15306.667799 eV Total energy + Delta-G solvation = -2616.260618 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12378 -36.72420 -34.19719 -32.90457 -32.15595 -31.30426 -28.03120 -27.33152 -26.52580 -23.86980 -22.79946 -20.69826 -20.04861 -18.69584 -17.33430 -15.77532 -15.68292 -15.26101 -14.70805 -14.33025 -14.23639 -13.78074 -13.25449 -12.85619 -12.63184 -12.41472 -12.27728 -12.08947 -11.76558 -11.39343 -11.10057 -10.80139 -10.74982 -10.55680 -10.28164 -10.19859 -9.78353 -9.70149 -9.39611 -8.80337 -7.43684 -7.09381 -6.58037 -6.00536 -4.08297 2.31414 2.63543 3.15429 3.27540 3.43333 3.84019 3.88061 4.22050 4.80521 4.85817 5.22190 5.40344 5.62877 5.68407 5.73104 5.81404 5.89743 6.00096 6.11828 6.21444 6.29459 6.44168 6.52936 6.67831 6.75882 6.92354 6.98231 7.08924 7.33484 7.37058 7.43171 7.73239 7.88867 8.32118 8.40663 8.54386 8.68353 8.73662 8.96602 9.16873 10.47985 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019968 B = 0.011918 C = 0.008813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.919611 B = 2348.777677 C = 3176.412895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.040 4.040 3 C -0.085 4.085 4 C 0.052 3.948 5 C -0.464 4.464 6 H 0.085 0.915 7 C 0.096 3.904 8 N -0.838 5.838 9 Si 0.876 3.124 10 H -0.264 1.264 11 H -0.292 1.292 12 H -0.257 1.257 13 C -0.188 4.188 14 C 0.137 3.863 15 C -0.214 4.214 16 C -0.057 4.057 17 C -0.279 4.279 18 C 0.286 3.714 19 N -0.872 5.872 20 N -0.472 5.472 21 C 0.087 3.913 22 H 0.042 0.958 23 H 0.039 0.961 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.274 0.726 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.385 0.615 32 H 0.411 0.589 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.352 3.592 7.625 8.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.078 4.078 3 C -0.187 4.187 4 C 0.046 3.954 5 C -0.497 4.497 6 H 0.102 0.898 7 C -0.117 4.117 8 N -0.467 5.467 9 Si 0.702 3.298 10 H -0.190 1.190 11 H -0.219 1.219 12 H -0.181 1.181 13 C -0.198 4.198 14 C 0.027 3.973 15 C -0.238 4.238 16 C -0.077 4.077 17 C -0.304 4.304 18 C 0.178 3.822 19 N -0.410 5.410 20 N -0.156 5.156 21 C -0.056 4.056 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.211 0.789 32 H 0.244 0.756 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.241 3.179 7.730 8.362 hybrid contribution 0.724 -0.416 0.259 0.874 sum 0.965 2.763 7.990 8.509 Atomic orbital electron populations 1.21679 0.96136 0.99931 1.01683 1.20015 0.95173 0.91248 1.01339 1.20498 1.16967 0.95645 0.85625 1.17845 0.96654 0.88686 0.92253 1.18146 1.38395 1.01520 0.91660 0.89757 1.25626 0.95851 0.95543 0.94662 1.69868 1.37455 1.13593 1.25816 0.87029 0.81913 0.80053 0.80762 1.18997 1.21930 1.18056 1.19161 1.11476 0.96828 0.92286 1.17858 1.00041 0.85979 0.93432 1.19510 1.13805 0.93024 0.97453 1.20151 0.97896 0.95998 0.93635 1.19998 1.18350 0.98133 0.93942 1.17197 0.89711 0.91670 0.83572 1.42711 1.78815 1.14816 1.04674 1.42955 1.57259 1.10138 1.05257 1.21635 1.00646 1.00659 0.82640 0.93884 0.94182 0.91761 0.89580 0.94019 0.91568 0.88433 0.87565 0.87769 0.78911 0.75648 0.92714 0.91163 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.89 37.15 0.37 -2.20 16 2 C -0.04 -0.85 4.49 -27.89 -0.13 -0.97 16 3 C -0.08 -1.97 5.17 -80.63 -0.42 -2.39 16 4 C 0.05 1.32 4.79 -104.81 -0.50 0.82 16 5 C -0.46 -12.37 8.25 -38.04 -0.31 -12.69 16 6 H 0.08 2.36 7.31 -52.49 -0.38 1.97 16 7 C 0.10 2.53 4.51 -17.34 -0.08 2.45 16 8 N -0.84 -22.69 13.94 55.54 0.77 -21.91 16 9 Si 0.88 21.05 24.73 -169.99 -4.20 16.84 16 10 H -0.26 -6.00 5.93 56.52 0.34 -5.67 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.26 -6.56 7.11 56.52 0.40 -6.16 16 13 C -0.19 -4.52 6.27 -104.75 -0.66 -5.18 16 14 C 0.14 3.05 6.77 -83.92 -0.57 2.48 16 15 C -0.21 -4.14 9.87 -39.33 -0.39 -4.53 16 16 C -0.06 -1.02 10.00 -39.60 -0.40 -1.42 16 17 C -0.28 -5.28 9.90 -39.32 -0.39 -5.67 16 18 C 0.29 6.13 6.78 -83.66 -0.57 5.57 16 19 N -0.87 -16.62 9.07 32.49 0.29 -16.33 16 20 N -0.47 -10.03 3.15 -116.16 -0.37 -10.40 16 21 C 0.09 1.39 10.75 59.85 0.64 2.03 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.09 2.01 3.77 -51.93 -0.20 1.81 16 26 H 0.04 0.80 7.07 -51.93 -0.37 0.43 16 27 H 0.27 6.90 8.30 -40.82 -0.34 6.56 16 28 H 0.10 1.63 7.95 -52.49 -0.42 1.21 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.38 5.88 8.85 -40.82 -0.36 5.52 16 32 H 0.41 8.51 6.48 -40.82 -0.26 8.24 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.03 6.95 -51.93 -0.36 0.67 16 35 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 LS Contribution 281.76 15.07 4.25 4.25 Total: -1.00 -29.25 281.76 -7.14 -36.40 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -4.50 Total: 12.84 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -3.39 Total: -21.69 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.70 Total: -48.64 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.20 Total: 16.84 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.25 -7.14 -36.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260066845.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.005 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds