Wall clock time and date at job start Mon Mar 30 2020 05:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47203 * 2 1 4 4 C 1.38970 * 125.37396 * 264.57767 * 3 2 1 5 5 C 1.40906 * 126.93442 * 359.95735 * 4 3 2 6 6 H 1.08001 * 119.99811 * 133.29531 * 5 4 3 7 7 C 1.39677 * 120.00132 * 313.30591 * 5 4 3 8 8 N 1.31075 * 120.00479 * 156.03737 * 7 5 4 9 9 Si 1.86805 * 119.99899 * 336.03106 * 7 5 4 10 10 H 1.48500 * 109.47002 * 95.20106 * 9 7 5 11 11 H 1.48490 * 109.47194 * 215.20632 * 9 7 5 12 12 H 1.48503 * 109.46889 * 335.20735 * 9 7 5 13 13 C 1.47569 * 106.13191 * 179.97438 * 4 3 2 14 14 C 1.40266 * 106.11447 * 0.02959 * 13 4 3 15 15 C 1.39164 * 119.35043 * 180.02562 * 14 13 4 16 16 C 1.37985 * 120.13217 * 359.96444 * 15 14 13 17 17 C 1.38451 * 120.70866 * 359.97438 * 16 15 14 18 18 C 1.38731 * 120.15442 * 0.02665 * 17 16 15 19 19 N 1.39399 * 120.23207 * 179.72255 * 18 17 16 20 20 N 1.35661 * 125.38389 * 84.63952 * 3 2 1 21 21 C 1.46506 * 124.69030 * 359.97438 * 20 3 2 22 22 H 1.09000 * 109.47320 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47453 * 300.00502 * 1 2 3 24 24 H 1.09000 * 109.46982 * 60.00899 * 1 2 3 25 25 H 1.09000 * 109.47810 * 239.99367 * 2 1 3 26 26 H 1.09000 * 109.46982 * 119.99101 * 2 1 3 27 27 H 0.97002 * 120.00585 * 179.97438 * 8 7 5 28 28 H 1.07999 * 119.93122 * 179.97438 * 15 14 13 29 29 H 1.08000 * 119.64553 * 180.02562 * 16 15 14 30 30 H 1.07996 * 119.92406 * 180.02562 * 17 16 15 31 31 H 0.97001 * 119.99947 * 354.38440 * 19 18 17 32 32 H 0.96996 * 120.00585 * 174.39286 * 19 18 17 33 33 H 1.08997 * 109.46958 * 270.10222 * 21 20 3 34 34 H 1.09001 * 109.47434 * 30.10587 * 21 20 3 35 35 H 1.08999 * 109.46725 * 150.10552 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4014 2.1436 -1.1281 5 6 2.3791 1.6973 -2.4644 6 1 1.9522 2.3219 -3.2352 7 6 2.9087 0.4471 -2.7922 8 7 2.4989 -0.1763 -3.8699 9 14 4.2014 -0.3365 -1.6947 10 1 3.5437 -1.2646 -0.7402 11 1 5.1696 -1.0903 -2.5308 12 1 4.9184 0.7229 -0.9404 13 6 2.8219 3.4727 -0.6440 14 6 2.6720 3.4445 0.7504 15 6 2.9958 4.5752 1.4942 16 6 3.4602 5.7105 0.8622 17 6 3.6109 5.7423 -0.5137 18 6 3.2943 4.6268 -1.2754 19 7 3.4399 4.6589 -2.6614 20 7 2.1967 2.1959 1.1012 21 6 1.9085 1.7682 2.4725 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 2.8669 -1.0444 -4.0977 28 1 2.8836 4.5640 2.5683 29 1 3.7096 6.5835 1.4472 30 1 3.9759 6.6374 -0.9952 31 1 3.6851 5.4863 -3.1042 32 1 3.2960 3.8539 -3.1830 33 1 0.8720 2.0019 2.7156 34 1 2.0686 0.6935 2.5592 35 1 2.5704 2.2911 3.1628 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260066845.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:51 Heat of formation + Delta-G solvation = 30.312190 kcal Electronic energy + Delta-G solvation = -17923.721754 eV Core-core repulsion = 15306.667799 eV Total energy + Delta-G solvation = -2617.053955 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74575 -38.27399 -35.92161 -34.59106 -33.76649 -32.94319 -29.62987 -28.97756 -28.04013 -25.49754 -24.43861 -22.27192 -21.64624 -20.45015 -19.07677 -17.41161 -17.31442 -16.80566 -16.40739 -15.93208 -15.76066 -15.32146 -14.89487 -14.72120 -14.18344 -13.96005 -13.75515 -13.51170 -13.35007 -13.13242 -12.78043 -12.50204 -12.26311 -12.09561 -12.00766 -11.90545 -11.53711 -11.41489 -10.95461 -10.73949 -9.13802 -8.69493 -8.55940 -7.65278 -6.03927 0.73427 1.05129 1.26122 1.33114 1.48550 2.04868 2.27102 2.37427 3.06113 3.33596 3.45045 4.12216 4.15276 4.20294 4.32404 4.48431 4.54247 4.62726 4.65787 4.74137 4.79993 4.93664 4.99577 5.12479 5.18393 5.31040 5.39752 5.47096 5.62602 5.74778 5.93505 6.07076 6.14136 6.52797 6.66278 6.90656 6.93489 7.10844 7.21521 7.27267 8.55269 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019968 B = 0.011918 C = 0.008813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.919611 B = 2348.777677 C = 3176.412895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.047 4.047 3 C -0.069 4.069 4 C 0.002 3.998 5 C -0.470 4.470 6 H 0.050 0.950 7 C 0.065 3.935 8 N -0.880 5.880 9 Si 0.923 3.077 10 H -0.241 1.241 11 H -0.288 1.288 12 H -0.282 1.282 13 C -0.229 4.229 14 C 0.120 3.880 15 C -0.216 4.216 16 C -0.051 4.051 17 C -0.274 4.274 18 C 0.258 3.742 19 N -0.870 5.870 20 N -0.478 5.478 21 C 0.078 3.922 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.034 0.966 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.278 0.722 28 H 0.129 0.871 29 H 0.149 0.851 30 H 0.132 0.868 31 H 0.401 0.599 32 H 0.401 0.599 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.626 4.397 10.916 11.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.085 4.085 3 C -0.174 4.174 4 C -0.004 4.004 5 C -0.504 4.504 6 H 0.068 0.932 7 C -0.143 4.143 8 N -0.512 5.512 9 Si 0.749 3.251 10 H -0.166 1.166 11 H -0.215 1.215 12 H -0.207 1.207 13 C -0.238 4.238 14 C 0.010 3.990 15 C -0.240 4.240 16 C -0.071 4.071 17 C -0.300 4.300 18 C 0.151 3.849 19 N -0.408 5.408 20 N -0.162 5.162 21 C -0.063 4.063 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.147 0.853 29 H 0.167 0.833 30 H 0.150 0.850 31 H 0.230 0.770 32 H 0.231 0.769 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.512 4.006 11.051 11.766 hybrid contribution 0.605 -0.473 -0.640 1.000 sum 1.117 3.533 10.411 11.051 Atomic orbital electron populations 1.21579 0.94256 1.01556 1.01140 1.20113 0.96850 0.90104 1.01388 1.20792 1.14413 0.96103 0.86062 1.17998 0.99436 0.90647 0.92343 1.18044 1.38845 1.01533 0.92003 0.93202 1.26054 0.96836 0.95865 0.95539 1.69909 1.39262 1.14461 1.27546 0.86305 0.80034 0.78983 0.79785 1.16554 1.21510 1.20731 1.19523 1.13157 0.97175 0.93937 1.18300 1.00387 0.87200 0.93147 1.19914 1.12951 0.92134 0.98961 1.20688 0.95940 0.96980 0.93480 1.20420 1.16897 0.98028 0.94639 1.17571 0.90709 0.92221 0.84439 1.42650 1.78740 1.15136 1.04295 1.43235 1.56656 1.09649 1.06635 1.21992 1.02356 1.01834 0.80092 0.91226 0.92271 0.94669 0.91906 0.91356 0.91188 0.85338 0.83294 0.85018 0.77027 0.76928 0.90878 0.89851 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.89 71.98 0.71 -3.88 16 2 C -0.05 -1.92 4.49 29.85 0.13 -1.78 16 3 C -0.07 -3.18 5.17 42.14 0.22 -2.96 16 4 C 0.00 0.12 4.79 -19.99 -0.10 0.03 16 5 C -0.47 -26.50 8.25 23.27 0.19 -26.31 16 6 H 0.05 3.04 7.31 -2.91 -0.02 3.02 16 7 C 0.07 3.59 4.51 85.15 0.38 3.98 16 8 N -0.88 -49.82 13.94 21.79 0.30 -49.52 16 9 Si 0.92 44.38 24.73 68.60 1.70 46.07 16 10 H -0.24 -10.52 5.93 99.48 0.59 -9.93 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.28 -14.58 7.11 99.48 0.71 -13.87 16 13 C -0.23 -11.09 6.27 -19.95 -0.13 -11.22 16 14 C 0.12 5.12 6.77 38.87 0.26 5.39 16 15 C -0.22 -7.56 9.87 22.43 0.22 -7.34 16 16 C -0.05 -1.64 10.00 22.26 0.22 -1.41 16 17 C -0.27 -9.71 9.90 22.44 0.22 -9.49 16 18 C 0.26 11.05 6.78 38.43 0.26 11.32 16 19 N -0.87 -34.13 9.07 -51.12 -0.46 -34.60 16 20 N -0.48 -19.32 3.15 -521.43 -1.64 -20.97 16 21 C 0.08 2.19 10.75 127.77 1.37 3.56 16 22 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 2.90 3.77 -2.39 -0.01 2.89 16 26 H 0.07 2.42 7.07 -2.39 -0.02 2.40 16 27 H 0.28 14.56 8.30 -92.71 -0.77 13.79 16 28 H 0.13 3.63 7.95 -2.91 -0.02 3.61 16 29 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 30 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 31 H 0.40 12.36 8.85 -92.71 -0.82 11.54 16 32 H 0.40 17.69 6.48 -92.71 -0.60 17.09 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 2.10 6.95 -2.39 -0.02 2.09 16 35 H 0.09 2.10 7.94 -2.39 -0.02 2.08 16 Total: -1.00 -66.20 281.76 3.46 -62.75 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: -0.42 Total: 36.39 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 3.98 Total: -40.13 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -1.80 Total: -105.08 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.70 Total: 46.07 kcal Total: -66.20 3.46 -62.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260066845.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.057 kcal (2) G-P(sol) polarization free energy of solvation -66.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds