Wall clock time and date at job start Mon Mar 30 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.26980 * 125.12227 * 2 1 4 4 N 1.39341 * 114.48647 * 180.02562 * 3 2 1 5 5 C 1.39608 * 125.65244 * 179.97438 * 4 3 2 6 6 C 1.38994 * 120.08060 * 180.02562 * 5 4 3 7 7 C 1.38058 * 119.91777 * 180.02562 * 6 5 4 8 8 C 1.38319 * 120.08197 * 359.97438 * 7 6 5 9 9 C 1.38274 * 120.16193 * 0.02617 * 8 7 6 10 10 C 1.50697 * 119.96399 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47419 * 89.99578 * 10 9 8 12 12 H 1.08006 * 119.99945 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00251 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99872 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00248 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46871 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47205 * 119.99685 * 15 13 11 18 18 H 1.48498 * 109.47275 * 240.00087 * 15 13 11 19 19 C 1.38117 * 120.07676 * 359.71743 * 9 8 7 20 20 C 1.47235 * 108.69876 * 359.97438 * 4 3 2 21 21 C 1.51598 * 125.08169 * 179.90548 * 2 1 3 22 22 H 1.08999 * 109.46629 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47047 * 119.97224 * 1 2 3 24 24 H 1.08993 * 109.47519 * 239.97453 * 1 2 3 25 25 H 1.07997 * 120.03852 * 0.02587 * 6 5 4 26 26 H 1.08004 * 119.95707 * 180.02562 * 7 6 5 27 27 H 1.07999 * 119.91927 * 179.97438 * 8 7 6 28 28 H 1.09000 * 109.47258 * 209.99989 * 10 9 8 29 29 H 1.09006 * 109.46895 * 330.00101 * 10 9 8 30 30 H 0.97003 * 120.00030 * 180.02562 * 14 13 11 31 31 H 1.08000 * 120.03803 * 180.29555 * 19 9 8 32 32 H 1.09002 * 110.66389 * 118.44240 * 20 4 3 33 33 H 1.08998 * 110.66604 * 241.39727 * 20 4 3 34 34 H 1.09002 * 110.61765 * 61.44561 * 21 2 1 35 35 H 1.09007 * 110.67886 * 298.48484 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2375 1.0386 0.0000 4 7 3.6070 0.7814 -0.0006 5 6 4.6161 1.7462 -0.0012 6 6 5.9508 1.3582 -0.0023 7 6 6.9460 2.3151 -0.0023 8 6 6.6163 3.6584 -0.0019 9 6 5.2896 4.0481 -0.0008 10 6 4.9354 5.5128 0.0002 11 6 4.8165 6.0020 -1.4202 12 1 4.9806 5.3202 -2.2416 13 6 4.4982 7.3198 -1.6712 14 7 4.2979 8.1498 -0.6709 15 14 4.3501 7.9260 -3.4319 16 1 4.6206 6.8037 -4.3662 17 1 2.9777 8.4436 -3.6634 18 1 5.3350 9.0124 -3.6659 19 6 4.2886 3.0964 -0.0061 20 6 3.8135 -0.6764 -0.0004 21 6 2.3783 -1.2406 0.0020 22 1 -0.3632 1.0277 0.0005 23 1 -0.3633 -0.5134 -0.8903 24 1 -0.3634 -0.5142 0.8897 25 1 6.2090 0.3095 -0.0030 26 1 7.9833 2.0143 -0.0036 27 1 7.3969 4.4047 -0.0016 28 1 3.9852 5.6565 0.5147 29 1 5.7154 6.0749 0.5139 30 1 4.0737 9.0769 -0.8475 31 1 3.2526 3.4015 -0.0101 32 1 4.3480 -0.9892 -0.8974 33 1 4.3513 -0.9886 0.8948 34 1 2.1998 -1.8364 -0.8931 35 1 2.2015 -1.8337 0.8994 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260079225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:50 Heat of formation + Delta-G solvation = 67.531389 kcal Electronic energy + Delta-G solvation = -16644.005072 eV Core-core repulsion = 14028.565063 eV Total energy + Delta-G solvation = -2615.440009 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.05427 -38.24498 -33.96153 -32.89754 -31.13600 -30.85180 -29.71053 -27.35862 -26.56165 -23.60644 -22.75052 -21.73741 -19.83148 -19.00316 -16.89581 -16.21248 -16.09873 -15.41656 -14.87403 -14.50118 -14.01536 -13.53253 -13.52213 -12.97221 -12.86646 -12.66174 -12.44019 -12.23746 -11.85460 -11.68993 -11.35358 -11.24450 -10.96217 -10.82457 -10.46820 -10.36978 -10.03461 -9.51849 -9.38312 -9.02171 -8.36802 -7.85134 -6.90225 -5.98538 -4.01423 1.86805 2.16766 2.58932 2.74210 3.33501 3.40613 3.46593 4.21562 4.36753 4.44441 4.63092 4.74659 4.84897 5.32676 5.36161 5.37783 5.43971 5.44718 5.56252 5.58992 5.63877 5.77424 6.02237 6.16405 6.21497 6.35742 6.53708 6.82251 7.08849 7.14667 7.30509 7.46295 7.60956 7.88439 7.96956 7.98312 8.19895 8.38911 9.03800 9.61776 11.11704 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.005709 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.791174 B = 4903.191867 C = 5695.316827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.041 3.959 3 N -0.220 5.220 4 N -0.478 5.478 5 C 0.217 3.783 6 C -0.206 4.206 7 C -0.087 4.087 8 C -0.161 4.161 9 C 0.000 4.000 10 C 0.047 3.953 11 C -0.507 4.507 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.159 4.159 20 C 0.084 3.916 21 C -0.128 4.128 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.029 0.971 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 -19.066 2.215 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.154 4.154 3 N -0.023 5.023 4 N -0.280 5.280 5 C 0.122 3.878 6 C -0.228 4.228 7 C -0.105 4.105 8 C -0.180 4.180 9 C -0.001 4.001 10 C 0.010 3.990 11 C -0.545 4.545 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.180 4.180 20 C -0.040 4.040 21 C -0.169 4.169 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.143 0.857 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.093 -17.868 2.252 18.273 hybrid contribution 0.117 -0.563 -0.998 1.152 sum -2.976 -18.431 1.254 18.712 Atomic orbital electron populations 1.20221 0.85959 1.04094 1.02749 1.25016 0.97035 0.90555 1.02829 1.73788 0.90722 1.28009 1.09791 1.48090 0.99357 1.03106 1.77406 1.17302 0.85141 0.87359 0.98038 1.20262 0.90402 0.98881 1.13285 1.20723 0.97727 0.92906 0.99174 1.20986 0.96546 0.95126 1.05390 1.20525 0.91857 0.98115 0.89594 1.18377 0.97674 0.85124 0.97803 1.21086 1.47319 0.94657 0.91470 0.92441 1.25000 0.95360 0.96798 0.97190 1.69972 1.48143 1.04761 1.30558 0.86488 0.77662 0.78749 0.84882 1.19703 1.20954 1.20948 1.20670 1.00510 0.89595 1.07237 1.22560 0.97315 0.81769 1.02348 1.22304 0.92345 0.98103 1.04105 0.90294 0.90368 0.90396 0.87339 0.86736 0.86421 0.95265 0.95134 0.92956 0.85663 0.90777 0.90766 0.88923 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.48 36.00 0.38 -0.23 16 2 C 0.04 0.50 7.44 -78.88 -0.59 -0.08 16 3 N -0.22 -3.73 11.21 34.89 0.39 -3.34 16 4 N -0.48 -8.21 4.09 -57.47 -0.24 -8.44 16 5 C 0.22 4.23 6.71 -83.78 -0.56 3.66 16 6 C -0.21 -3.56 9.49 -39.37 -0.37 -3.93 16 7 C -0.09 -1.52 10.04 -39.62 -0.40 -1.91 16 8 C -0.16 -3.32 9.70 -39.54 -0.38 -3.71 16 9 C 0.00 0.00 5.07 -104.65 -0.53 -0.53 16 10 C 0.05 1.27 5.10 -29.04 -0.15 1.13 16 11 C -0.51 -14.80 9.09 -34.44 -0.31 -15.11 16 12 H 0.06 1.68 7.74 -52.48 -0.41 1.28 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 15 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.16 -3.56 9.30 -39.37 -0.37 -3.92 16 20 C 0.08 1.03 6.58 -3.01 -0.02 1.01 16 21 C -0.13 -1.23 7.00 -26.81 -0.19 -1.42 16 22 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.11 1.55 7.31 -52.49 -0.38 1.17 16 26 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 27 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 28 H 0.03 0.83 8.09 -51.93 -0.42 0.41 16 29 H 0.03 0.85 8.09 -51.93 -0.42 0.43 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.13 2.96 7.67 -52.49 -0.40 2.55 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 301.21 15.07 4.54 4.54 Total: -1.00 -33.25 301.21 -8.15 -41.40 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -4.97 Total: -1.46 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -3.59 Total: -23.46 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.89 Total: -38.19 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.25 -8.15 -41.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.928 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds