Wall clock time and date at job start Mon Mar 30 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.26980 * 125.12227 * 2 1 4 4 N 1.39341 * 114.48647 * 180.02562 * 3 2 1 5 5 C 1.39608 * 125.65244 * 179.97438 * 4 3 2 6 6 C 1.38994 * 120.08060 * 180.02562 * 5 4 3 7 7 C 1.38058 * 119.91777 * 180.02562 * 6 5 4 8 8 C 1.38319 * 120.08197 * 359.97438 * 7 6 5 9 9 C 1.38274 * 120.16193 * 0.02617 * 8 7 6 10 10 C 1.50697 * 119.96399 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47419 * 89.99578 * 10 9 8 12 12 H 1.08006 * 119.99945 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00251 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99872 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00248 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46871 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47205 * 119.99685 * 15 13 11 18 18 H 1.48498 * 109.47275 * 240.00087 * 15 13 11 19 19 C 1.38117 * 120.07676 * 359.71743 * 9 8 7 20 20 C 1.47235 * 108.69876 * 359.97438 * 4 3 2 21 21 C 1.51598 * 125.08169 * 179.90548 * 2 1 3 22 22 H 1.08999 * 109.46629 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47047 * 119.97224 * 1 2 3 24 24 H 1.08993 * 109.47519 * 239.97453 * 1 2 3 25 25 H 1.07997 * 120.03852 * 0.02587 * 6 5 4 26 26 H 1.08004 * 119.95707 * 180.02562 * 7 6 5 27 27 H 1.07999 * 119.91927 * 179.97438 * 8 7 6 28 28 H 1.09000 * 109.47258 * 209.99989 * 10 9 8 29 29 H 1.09006 * 109.46895 * 330.00101 * 10 9 8 30 30 H 0.97003 * 120.00030 * 180.02562 * 14 13 11 31 31 H 1.08000 * 120.03803 * 180.29555 * 19 9 8 32 32 H 1.09002 * 110.66389 * 118.44240 * 20 4 3 33 33 H 1.08998 * 110.66604 * 241.39727 * 20 4 3 34 34 H 1.09002 * 110.61765 * 61.44561 * 21 2 1 35 35 H 1.09007 * 110.67886 * 298.48484 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2375 1.0386 0.0000 4 7 3.6070 0.7814 -0.0006 5 6 4.6161 1.7462 -0.0012 6 6 5.9508 1.3582 -0.0023 7 6 6.9460 2.3151 -0.0023 8 6 6.6163 3.6584 -0.0019 9 6 5.2896 4.0481 -0.0008 10 6 4.9354 5.5128 0.0002 11 6 4.8165 6.0020 -1.4202 12 1 4.9806 5.3202 -2.2416 13 6 4.4982 7.3198 -1.6712 14 7 4.2979 8.1498 -0.6709 15 14 4.3501 7.9260 -3.4319 16 1 4.6206 6.8037 -4.3662 17 1 2.9777 8.4436 -3.6634 18 1 5.3350 9.0124 -3.6659 19 6 4.2886 3.0964 -0.0061 20 6 3.8135 -0.6764 -0.0004 21 6 2.3783 -1.2406 0.0020 22 1 -0.3632 1.0277 0.0005 23 1 -0.3633 -0.5134 -0.8903 24 1 -0.3634 -0.5142 0.8897 25 1 6.2090 0.3095 -0.0030 26 1 7.9833 2.0143 -0.0036 27 1 7.3969 4.4047 -0.0016 28 1 3.9852 5.6565 0.5147 29 1 5.7154 6.0749 0.5139 30 1 4.0737 9.0769 -0.8475 31 1 3.2526 3.4015 -0.0101 32 1 4.3480 -0.9892 -0.8974 33 1 4.3513 -0.9886 0.8948 34 1 2.1998 -1.8364 -0.8931 35 1 2.2015 -1.8337 0.8994 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260079225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:49 Heat of formation + Delta-G solvation = 47.383521 kcal Electronic energy + Delta-G solvation = -16644.878749 eV Core-core repulsion = 14028.565063 eV Total energy + Delta-G solvation = -2616.313686 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.17991 -39.68654 -35.71813 -34.51290 -32.84114 -31.91478 -30.83376 -29.09634 -27.89776 -25.40061 -24.05781 -23.16729 -21.31932 -20.07780 -18.58667 -18.15516 -17.01611 -16.85517 -16.53694 -16.16960 -15.28408 -14.84587 -14.62976 -14.28783 -14.13662 -14.01983 -13.85041 -13.52903 -13.22505 -13.05474 -12.69531 -12.65102 -12.59996 -12.37359 -12.33810 -12.13136 -11.56590 -11.40557 -11.02549 -10.64150 -10.35591 -9.53398 -8.26475 -8.17769 -6.36735 0.52977 0.61730 1.35808 1.37088 1.43998 1.51185 1.63340 2.37630 3.05201 3.07019 3.29170 3.54541 3.83054 4.08828 4.14624 4.20417 4.41406 4.49837 4.64553 4.68983 4.72627 4.78699 4.81209 4.87754 4.93746 5.07494 5.20797 5.29024 5.36084 5.41416 5.62066 5.69958 5.75731 5.95057 6.10735 6.17795 6.53072 6.74991 7.10762 7.31407 8.87080 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.005709 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.791174 B = 4903.191867 C = 5695.316827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.067 3.933 3 N -0.301 5.301 4 N -0.495 5.495 5 C 0.221 3.779 6 C -0.196 4.196 7 C -0.066 4.066 8 C -0.182 4.182 9 C -0.028 4.028 10 C 0.057 3.943 11 C -0.528 4.528 12 H 0.050 0.950 13 C 0.004 3.996 14 N -0.931 5.931 15 Si 0.969 3.031 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.270 1.270 19 C -0.189 4.189 20 C 0.074 3.926 21 C -0.123 4.123 22 H 0.060 0.940 23 H 0.106 0.894 24 H 0.108 0.892 25 H 0.150 0.850 26 H 0.160 0.840 27 H 0.117 0.883 28 H -0.006 1.006 29 H 0.009 0.991 30 H 0.267 0.733 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 -22.665 1.123 22.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.128 4.128 3 N -0.104 5.104 4 N -0.295 5.295 5 C 0.123 3.877 6 C -0.219 4.219 7 C -0.085 4.085 8 C -0.202 4.202 9 C -0.029 4.029 10 C 0.020 3.980 11 C -0.566 4.566 12 H 0.069 0.931 13 C -0.194 4.194 14 N -0.570 5.570 15 Si 0.793 3.207 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.195 1.195 19 C -0.211 4.211 20 C -0.049 4.049 21 C -0.163 4.163 22 H 0.079 0.921 23 H 0.124 0.876 24 H 0.126 0.874 25 H 0.168 0.832 26 H 0.178 0.822 27 H 0.135 0.865 28 H 0.012 0.988 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.140 0.860 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.913 -21.506 1.168 21.734 hybrid contribution -0.104 0.353 -0.594 0.698 sum -3.017 -21.153 0.574 21.375 Atomic orbital electron populations 1.20469 0.83491 1.03866 1.05486 1.25965 0.98530 0.91091 0.97166 1.73882 0.91219 1.30756 1.14527 1.48237 0.99294 1.04455 1.77524 1.17429 0.87104 0.86731 0.96392 1.20699 0.89006 1.00887 1.11277 1.21143 1.00091 0.91103 0.96138 1.21022 0.94941 0.97146 1.07058 1.20209 0.93847 0.95891 0.92911 1.18098 0.95057 0.88279 0.96517 1.21344 1.47896 0.95184 0.92153 0.93146 1.25963 0.94534 0.96779 1.02143 1.70095 1.48583 1.05287 1.33082 0.85341 0.78178 0.78339 0.78856 1.19188 1.20027 1.19480 1.20395 0.98605 0.91588 1.10466 1.22932 0.99458 0.78934 1.03563 1.22469 0.89788 0.97041 1.06966 0.92125 0.87553 0.87387 0.83197 0.82231 0.86513 0.98777 0.97274 0.92443 0.88908 0.89652 0.89331 0.86041 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.48 71.24 0.75 -0.32 16 2 C 0.07 1.51 7.44 46.96 0.35 1.86 16 3 N -0.30 -10.29 11.21 -41.07 -0.46 -10.75 16 4 N -0.49 -16.65 4.09 -335.75 -1.37 -18.02 16 5 C 0.22 8.68 6.71 38.25 0.26 8.93 16 6 C -0.20 -6.31 9.49 22.41 0.21 -6.10 16 7 C -0.07 -2.18 10.04 22.25 0.22 -1.96 16 8 C -0.18 -7.69 9.70 22.30 0.22 -7.48 16 9 C -0.03 -1.40 5.07 -19.89 -0.10 -1.50 16 10 C 0.06 3.39 5.10 29.10 0.15 3.54 16 11 C -0.53 -32.63 9.09 25.60 0.23 -32.40 16 12 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 13 C 0.00 0.23 5.46 84.65 0.46 0.69 16 14 N -0.93 -58.82 13.29 21.45 0.28 -58.54 16 15 Si 0.97 46.65 29.54 68.60 2.03 48.68 16 16 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 17 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 19 C -0.19 -9.06 9.30 22.41 0.21 -8.85 16 20 C 0.07 1.55 6.58 86.65 0.57 2.12 16 21 C -0.12 -1.83 7.00 30.55 0.21 -1.61 16 22 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 23 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.15 3.56 7.31 -2.91 -0.02 3.54 16 26 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 27 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 28 H -0.01 -0.39 8.09 -2.39 -0.02 -0.41 16 29 H 0.01 0.55 8.09 -2.38 -0.02 0.53 16 30 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.09 4.90 7.67 -2.91 -0.02 4.88 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.12 1.16 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -79.05 301.21 5.28 -73.77 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.06 Total: 7.93 kcal Atomic # 6 Polarization: -46.81 SS G_CDS: 3.74 Total: -43.07 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -1.55 Total: -87.31 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -79.05 5.28 -73.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.153 kcal (2) G-P(sol) polarization free energy of solvation -79.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds