Wall clock time and date at job start Mon Mar 30 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50698 * 109.47209 * 2 1 4 4 N 1.30115 * 124.95046 * 270.18868 * 3 2 1 5 5 C 1.35782 * 109.64664 * 180.28694 * 4 3 2 6 6 C 1.39740 * 133.60730 * 179.71881 * 5 4 3 7 7 C 1.36604 * 119.88776 * 179.97438 * 6 5 4 8 8 C 1.50696 * 119.66285 * 180.02562 * 7 6 5 9 9 C 1.38776 * 120.67110 * 0.02837 * 7 6 5 10 10 C 1.37855 * 120.44759 * 359.97438 * 9 7 6 11 11 C 1.38831 * 119.69361 * 359.97438 * 10 9 7 12 12 N 1.36045 * 124.95349 * 89.99618 * 3 2 1 13 13 C 1.46491 * 126.34507 * 359.97438 * 12 3 2 14 14 C 1.50702 * 109.46957 * 269.68591 * 13 12 3 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 H 1.09002 * 109.47151 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47466 * 299.99791 * 1 2 3 24 24 H 1.09001 * 109.47246 * 60.00505 * 1 2 3 25 25 H 1.08997 * 109.47466 * 240.00209 * 2 1 3 26 26 H 1.09001 * 109.47246 * 119.99495 * 2 1 3 27 27 H 1.07995 * 120.05399 * 359.97438 * 6 5 4 28 28 H 1.09002 * 109.47190 * 90.00662 * 8 7 6 29 29 H 1.09001 * 109.47537 * 210.00567 * 8 7 6 30 30 H 1.08998 * 109.47515 * 330.00748 * 8 7 6 31 31 H 1.08000 * 119.77401 * 179.97438 * 9 7 6 32 32 H 1.07999 * 120.15112 * 180.02562 * 10 9 7 33 33 H 1.09004 * 109.47166 * 149.68857 * 13 12 3 34 34 H 1.08994 * 109.47507 * 29.68563 * 13 12 3 35 35 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2774 2.1247 -1.0665 5 6 2.7211 3.3569 -0.7081 6 6 3.1252 4.4833 -1.4297 7 6 3.5298 5.6072 -0.7670 8 6 3.9639 6.8193 -1.5502 9 6 3.5453 5.6441 0.6202 10 6 3.1511 4.5448 1.3527 11 6 2.7356 3.3941 0.6964 12 7 2.2920 2.1557 1.1150 13 6 2.1348 1.7130 2.5026 14 6 0.7440 2.0423 2.9804 15 1 0.0468 2.5320 2.3167 16 6 0.3596 1.7129 4.2630 17 7 1.2086 1.1163 5.0711 18 14 -1.3668 2.1141 4.8527 19 1 -2.2692 0.9729 4.5553 20 1 -1.3451 2.3594 6.3171 21 1 -1.8586 3.3290 4.1545 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.1175 4.4653 -2.5095 28 1 3.1014 7.4589 -1.7375 29 1 4.7096 7.3728 -0.9796 30 1 4.3947 6.5029 -2.5002 31 1 3.8683 6.5401 1.1293 32 1 3.1646 4.5789 2.4320 33 1 2.8651 2.2224 3.1314 34 1 2.2935 0.6363 2.5607 35 1 0.9383 0.8849 5.9735 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260088819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:58 Heat of formation + Delta-G solvation = 30.970758 kcal Electronic energy + Delta-G solvation = -17277.821780 eV Core-core repulsion = 14660.796383 eV Total energy + Delta-G solvation = -2617.025397 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.99954 -38.78577 -35.97728 -34.56399 -34.14105 -32.40505 -30.36875 -29.25155 -27.26468 -25.28268 -24.96386 -22.77337 -22.04788 -20.61990 -18.84242 -17.98434 -17.77983 -16.56197 -16.20526 -16.07853 -15.21065 -15.02596 -14.71580 -14.58063 -14.49947 -14.17301 -13.71903 -13.31972 -13.20836 -12.94266 -12.80238 -12.65650 -12.50968 -12.32402 -12.10615 -12.08765 -11.94067 -11.80272 -11.00527 -10.91483 -10.72996 -9.01767 -8.93076 -8.36069 -6.53647 0.08781 0.66587 1.34641 1.36048 1.46351 1.86189 2.03072 2.31996 2.93702 2.94591 3.24455 3.65486 4.05704 4.15847 4.18910 4.35228 4.37991 4.39568 4.54177 4.64362 4.73216 4.82530 4.88625 4.97076 4.97849 5.04072 5.09394 5.26606 5.34503 5.36401 5.50915 5.67426 5.73091 5.76887 5.79861 6.08569 6.30214 6.59642 7.02619 7.18038 8.69719 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021873 B = 0.007623 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.838012 B = 3672.110278 C = 4457.525111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.039 4.039 3 C 0.274 3.726 4 N -0.533 5.533 5 C 0.018 3.982 6 C -0.087 4.087 7 C -0.096 4.096 8 C -0.100 4.100 9 C -0.106 4.106 10 C -0.117 4.117 11 C 0.012 3.988 12 N -0.471 5.471 13 C 0.255 3.745 14 C -0.547 4.547 15 H 0.047 0.953 16 C 0.028 3.972 17 N -0.915 5.915 18 Si 0.964 3.036 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.276 1.276 22 H 0.092 0.908 23 H 0.040 0.960 24 H 0.054 0.946 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.138 0.862 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.113 0.887 33 H 0.024 0.976 34 H 0.043 0.957 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 5.093 -8.747 10.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 C 0.009 3.991 4 N -0.255 5.255 5 C -0.102 4.102 6 C -0.106 4.106 7 C -0.099 4.099 8 C -0.156 4.156 9 C -0.125 4.125 10 C -0.137 4.137 11 C -0.098 4.098 12 N -0.157 5.157 13 C 0.136 3.864 14 C -0.585 4.585 15 H 0.066 0.934 16 C -0.173 4.173 17 N -0.554 5.554 18 Si 0.788 3.212 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.201 1.201 22 H 0.110 0.890 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.131 0.869 26 H 0.101 0.899 27 H 0.156 0.844 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.175 0.825 32 H 0.131 0.869 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.630 4.690 -9.217 10.671 hybrid contribution -0.723 0.104 1.723 1.872 sum 1.907 4.794 -7.494 9.098 Atomic orbital electron populations 1.21653 0.93002 1.03409 1.01532 1.20196 0.97438 0.85502 1.04629 1.24147 0.97092 0.97136 0.80768 1.70308 1.23190 1.04011 1.27970 1.19566 1.05281 0.94597 0.90746 1.20024 1.00717 0.90067 0.99809 1.19739 1.00126 0.96248 0.93770 1.20752 1.01947 0.93416 0.99487 1.21065 1.00370 0.97468 0.93613 1.20241 1.02370 0.91477 0.99652 1.19418 1.05541 0.89175 0.95692 1.45908 1.50306 1.10463 1.09033 1.19286 0.97340 0.95970 0.73837 1.21307 0.97526 1.40997 0.98662 0.93425 1.25648 1.01683 0.94018 0.95997 1.69995 1.36836 1.40491 1.08032 0.85464 0.79222 0.78876 0.77664 1.19023 1.19920 1.20083 0.88955 0.94100 0.92679 0.86883 0.89937 0.84446 0.90292 0.89909 0.90621 0.82498 0.86895 0.95804 0.93868 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 9.89 71.98 0.71 -3.83 16 2 C -0.04 -1.35 6.23 29.84 0.19 -1.17 16 3 C 0.27 11.92 7.11 137.92 0.98 12.90 16 4 N -0.53 -23.57 11.27 -179.95 -2.03 -25.60 16 5 C 0.02 0.76 7.23 39.45 0.29 1.05 16 6 C -0.09 -2.98 9.67 22.25 0.22 -2.77 16 7 C -0.10 -2.78 5.84 -20.12 -0.12 -2.90 16 8 C -0.10 -1.85 9.99 71.23 0.71 -1.14 16 9 C -0.11 -3.27 9.67 22.31 0.22 -3.05 16 10 C -0.12 -4.65 10.05 22.32 0.22 -4.42 16 11 C 0.01 0.56 6.87 38.86 0.27 0.83 16 12 N -0.47 -22.44 2.79 -509.65 -1.42 -23.86 16 13 C 0.26 13.08 5.69 85.64 0.49 13.57 16 14 C -0.55 -29.60 9.02 25.60 0.23 -29.37 16 15 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 16 C 0.03 1.49 5.46 84.66 0.46 1.95 16 17 N -0.92 -50.42 13.29 21.45 0.28 -50.13 16 18 Si 0.96 42.10 29.54 68.60 2.03 44.12 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 22 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 23 H 0.04 1.61 7.77 -2.39 -0.02 1.59 16 24 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 26 H 0.08 2.88 7.01 -2.39 -0.02 2.86 16 27 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 30 H 0.07 1.23 8.07 -2.39 -0.02 1.21 16 31 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 33 H 0.02 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.04 2.24 6.99 -2.39 -0.02 2.22 16 35 H 0.27 14.11 8.31 -92.70 -0.77 13.33 16 Total: -1.00 -64.02 299.85 4.79 -59.22 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.07 Total: 14.61 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 4.86 Total: -18.36 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -3.16 Total: -99.60 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -64.02 4.79 -59.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.195 kcal (2) G-P(sol) polarization free energy of solvation -64.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds