Wall clock time and date at job start Mon Mar 30 2020 07:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47365 * 240.00057 * 3 2 1 5 5 H 1.48498 * 109.46756 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47198 * 119.99625 * 3 2 1 7 7 C 1.37881 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99913 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46938 * 179.97438 * 9 7 2 11 11 C 1.38254 * 119.99873 * 264.99802 * 10 9 7 12 12 C 1.38221 * 119.99697 * 179.97438 * 11 10 9 13 13 C 1.38252 * 120.00067 * 359.97438 * 12 11 10 14 14 C 1.38215 * 120.00294 * 359.97438 * 13 12 11 15 15 C 1.38218 * 120.00005 * 84.88842 * 10 9 7 16 16 C 1.50706 * 119.99800 * 0.06581 * 15 10 9 17 17 C 1.52994 * 109.46696 * 239.93114 * 16 15 10 18 18 C 1.53006 * 109.46914 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.46593 * 60.00409 * 18 17 16 20 20 C 1.52994 * 109.47156 * 299.99443 * 19 18 17 21 21 C 1.52997 * 109.46909 * 119.93157 * 16 15 10 22 22 H 0.97001 * 120.00363 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47163 * 60.00143 * 9 7 2 24 24 H 1.09004 * 109.46726 * 299.99956 * 9 7 2 25 25 H 1.07999 * 120.00136 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.99625 * 180.02562 * 12 11 10 27 27 H 1.08000 * 120.00419 * 180.02562 * 13 12 11 28 28 H 1.07995 * 120.00164 * 179.72593 * 14 13 12 29 29 H 1.08998 * 109.46840 * 359.92845 * 16 15 10 30 30 H 1.08998 * 109.47713 * 299.99751 * 17 16 15 31 31 H 1.09004 * 109.47435 * 60.00166 * 17 16 15 32 32 H 1.08992 * 109.47555 * 299.99897 * 18 17 16 33 33 H 1.09000 * 109.47192 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.46719 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.47479 * 60.00407 * 19 18 17 36 36 H 1.09001 * 109.47469 * 300.00366 * 20 19 18 37 37 H 1.09004 * 109.47435 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47140 * 299.99699 * 21 16 15 39 39 H 1.08998 * 109.47171 * 60.00451 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6001 -4.2379 -1.1922 12 6 3.4987 -5.2881 -1.1922 13 6 4.0281 -5.7450 0.0004 14 6 3.6592 -5.1512 1.1928 15 6 2.7604 -4.1006 1.1928 16 6 2.3580 -3.4532 2.4928 17 6 3.5977 -2.8798 3.1821 18 6 3.1890 -2.2220 4.5017 19 6 2.5367 -3.2653 5.4110 20 6 1.2970 -3.8388 4.7218 21 6 1.7059 -4.4970 3.4018 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.1869 -3.8807 -2.1239 26 1 3.7880 -5.7512 -2.1241 27 1 4.7306 -6.5653 0.0004 28 1 4.0693 -5.5110 2.1248 29 1 1.6484 -2.6501 2.2943 30 1 4.3073 -3.6829 3.3806 31 1 4.0623 -2.1362 2.5345 32 1 2.4796 -1.4187 4.3030 33 1 4.0723 -1.8138 4.9930 34 1 2.2452 -2.7966 6.3509 35 1 3.2462 -4.0685 5.6099 36 1 0.5875 -3.0356 4.5230 37 1 0.8320 -4.5818 5.3697 38 1 0.8227 -4.9055 2.9107 39 1 2.4156 -5.3001 3.6003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260092894.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:47 Heat of formation + Delta-G solvation = -30.632639 kcal Electronic energy + Delta-G solvation = -17917.703363 eV Core-core repulsion = 15401.546986 eV Total energy + Delta-G solvation = -2516.156377 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82952 -38.56401 -35.49062 -33.55329 -32.78970 -31.55249 -29.71080 -28.66265 -25.21145 -24.29774 -23.37051 -22.40038 -21.11952 -20.26153 -18.48436 -17.34406 -16.58777 -16.43211 -15.99180 -15.35370 -15.01648 -14.73698 -14.55878 -14.43459 -14.09670 -13.66835 -13.42791 -13.18742 -13.00513 -12.95969 -12.71973 -12.65676 -12.36440 -11.97029 -11.92997 -11.79477 -11.55343 -11.42140 -10.96883 -10.93924 -10.80655 -10.56853 -9.50021 -9.22051 -8.18949 -6.30691 0.65809 0.72490 1.36067 1.38099 1.46164 2.38261 3.07511 3.11669 3.80496 3.90659 4.01129 4.20242 4.28456 4.35217 4.40946 4.46728 4.51095 4.67724 4.69186 4.75308 4.77000 4.85676 4.86769 5.01985 5.16635 5.20955 5.24831 5.29619 5.31430 5.36039 5.42746 5.47305 5.53385 5.57424 5.63779 5.74830 5.77020 5.88079 6.17007 6.20932 6.38032 6.80263 7.36615 8.89942 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.014993 B = 0.010115 C = 0.007035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.092046 B = 2767.512815 C = 3979.246096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.048 0.952 9 C 0.063 3.937 10 C -0.074 4.074 11 C -0.145 4.145 12 C -0.127 4.127 13 C -0.137 4.137 14 C -0.117 4.117 15 C -0.087 4.087 16 C -0.050 4.050 17 C -0.097 4.097 18 C -0.120 4.120 19 C -0.109 4.109 20 C -0.119 4.119 21 C -0.101 4.101 22 H 0.264 0.736 23 H -0.009 1.009 24 H 0.008 0.992 25 H 0.105 0.895 26 H 0.141 0.859 27 H 0.150 0.850 28 H 0.141 0.859 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.784 -10.296 8.003 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.026 3.974 10 C -0.074 4.074 11 C -0.163 4.163 12 C -0.144 4.144 13 C -0.154 4.154 14 C -0.135 4.135 15 C -0.087 4.087 16 C -0.069 4.069 17 C -0.135 4.135 18 C -0.158 4.158 19 C -0.146 4.146 20 C -0.157 4.157 21 C -0.139 4.139 22 H 0.073 0.927 23 H 0.009 0.991 24 H 0.026 0.974 25 H 0.123 0.877 26 H 0.159 0.841 27 H 0.168 0.832 28 H 0.158 0.842 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.629 -10.178 8.004 15.029 hybrid contribution -0.281 1.417 -0.640 1.580 sum 7.348 -8.761 7.364 13.600 Atomic orbital electron populations 1.70068 1.07509 1.27735 1.51605 1.25816 0.95647 1.02657 0.94871 0.85654 0.78497 0.78795 0.79118 1.19500 1.20547 1.19239 1.21181 0.92570 0.91026 1.50288 0.93388 1.18045 0.92854 0.91311 0.95198 1.20354 0.97645 0.95607 0.93758 1.21138 1.00161 0.97963 0.97079 1.21308 0.97116 0.96569 0.99440 1.21341 1.01085 1.01116 0.91900 1.21164 0.97445 0.95731 0.99155 1.19875 0.97758 0.96826 0.94239 1.20137 0.97826 0.97454 0.91468 1.21439 0.96512 0.99651 0.95878 1.21548 1.00461 0.98168 0.95613 1.21487 0.96952 0.98429 0.97738 1.21558 0.97985 0.99928 0.96206 1.21536 0.99861 0.97402 0.95052 0.92734 0.99054 0.97402 0.87686 0.84139 0.83222 0.84168 0.92757 0.90375 0.94640 0.94378 0.90739 0.91041 0.90305 0.94127 0.90147 0.93732 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.95 45.21 29.54 68.60 2.03 47.23 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.51 -29.77 8.88 25.60 0.23 -29.54 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.06 3.45 4.41 29.10 0.13 3.58 16 10 C -0.07 -3.38 5.07 -19.87 -0.10 -3.48 16 11 C -0.15 -5.94 9.68 22.27 0.22 -5.72 16 12 C -0.13 -4.05 10.05 22.27 0.22 -3.83 16 13 C -0.14 -3.91 10.05 22.27 0.22 -3.68 16 14 C -0.12 -3.66 8.71 22.27 0.19 -3.47 16 15 C -0.09 -3.40 4.78 -19.86 -0.09 -3.50 16 16 C -0.05 -1.88 2.15 -11.54 -0.02 -1.91 16 17 C -0.10 -3.19 5.02 30.59 0.15 -3.04 16 18 C -0.12 -3.47 5.92 30.60 0.18 -3.29 16 19 C -0.11 -2.53 5.92 30.59 0.18 -2.35 16 20 C -0.12 -3.16 5.92 30.61 0.18 -2.98 16 21 C -0.10 -3.04 5.02 30.61 0.15 -2.88 16 22 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 23 H -0.01 -0.53 8.05 -2.39 -0.02 -0.55 16 24 H 0.01 0.46 6.39 -2.39 -0.02 0.45 16 25 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 26 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 27 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 28 H 0.14 3.48 7.10 -2.91 -0.02 3.46 16 29 H 0.05 2.57 5.41 -2.39 -0.01 2.56 16 30 H 0.08 2.13 7.39 -2.39 -0.02 2.11 16 31 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.08 2.01 7.39 -2.39 -0.02 1.99 16 Total: -1.00 -65.65 308.29 5.62 -60.03 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.00 Total: 14.45 kcal Atomic # 6 Polarization: -67.47 SS G_CDS: 2.31 Total: -65.17 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.28 Total: -56.55 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.65 5.62 -60.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260092894.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.400 kcal (2) G-P(sol) polarization free energy of solvation -65.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds