Wall clock time and date at job start Mon Mar 30 2020 07:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00176 * 2 1 4 4 H 1.48493 * 109.47254 * 239.99540 * 3 2 1 5 5 H 1.48506 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47455 * 119.99502 * 3 2 1 7 7 C 1.37881 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00161 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99737 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46739 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46739 * 179.97438 * 10 9 7 12 12 C 1.38253 * 120.00062 * 265.20907 * 11 10 9 13 13 C 1.38212 * 119.99580 * 180.23538 * 12 11 10 14 14 C 1.38258 * 120.00361 * 359.80577 * 13 12 11 15 15 C 1.38205 * 120.00034 * 359.97438 * 14 13 12 16 16 C 1.38224 * 119.99914 * 84.99885 * 11 10 9 17 17 C 1.50704 * 119.99937 * 359.97438 * 16 11 10 18 18 C 1.54887 * 110.48381 * 124.95067 * 17 16 11 19 19 C 1.54893 * 102.74533 * 156.62255 * 18 17 16 20 20 C 1.54266 * 104.19500 * 322.05712 * 19 18 17 21 21 C 1.53872 * 106.60044 * 23.61099 * 20 19 18 22 22 H 0.97004 * 120.00272 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.46995 * 60.00020 * 9 7 2 24 24 H 1.09001 * 109.46841 * 299.99964 * 9 7 2 25 25 H 1.08993 * 109.47423 * 60.00206 * 10 9 7 26 26 H 1.09001 * 109.47363 * 299.99568 * 10 9 7 27 27 H 1.07996 * 119.99910 * 0.05864 * 12 11 10 28 28 H 1.08011 * 119.99465 * 179.83292 * 13 12 11 29 29 H 1.07999 * 119.99912 * 179.97438 * 14 13 12 30 30 H 1.07996 * 120.00492 * 180.02562 * 15 14 13 31 31 H 1.09001 * 110.53750 * 2.33876 * 17 16 11 32 32 H 1.09001 * 110.75744 * 274.93157 * 18 17 16 33 33 H 1.09000 * 110.75698 * 38.30975 * 18 17 16 34 34 H 1.09002 * 110.48578 * 203.38190 * 19 18 17 35 35 H 1.08998 * 110.60430 * 80.79077 * 19 18 17 36 36 H 1.09002 * 110.02957 * 264.32709 * 20 19 18 37 37 H 1.09000 * 110.07144 * 142.92082 * 20 19 18 38 38 H 1.09003 * 110.03622 * 240.71485 * 21 20 19 39 39 H 1.09003 * 110.07498 * 119.30332 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4917 -4.9672 0.0025 12 6 1.2322 -5.6150 1.1959 13 6 0.5453 -6.8144 1.1960 14 6 0.1143 -7.3643 0.0030 15 6 0.3698 -6.7145 -1.1897 16 6 1.0563 -5.5144 -1.1898 17 6 1.3346 -4.8056 -2.4903 18 6 2.0700 -5.7484 -3.4749 19 6 1.7323 -5.1319 -4.8551 20 6 0.2675 -4.6686 -4.7143 21 6 0.0147 -4.4612 -3.2107 22 1 -0.4851 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8712 -3.6040 0.8922 26 1 2.8726 -3.6048 -0.8877 27 1 1.5686 -5.1852 2.1279 28 1 0.3449 -7.3218 2.1282 29 1 -0.4220 -8.3017 0.0031 30 1 0.0329 -7.1438 -2.1216 31 1 1.9209 -3.9033 -2.3162 32 1 3.1452 -5.7305 -3.2966 33 1 1.6817 -6.7641 -3.4001 34 1 1.8211 -5.8827 -5.6403 35 1 2.3824 -4.2826 -5.0653 36 1 -0.4049 -5.4329 -5.1040 37 1 0.1183 -3.7316 -5.2508 38 1 -0.7804 -5.1247 -2.8707 39 1 -0.2568 -3.4235 -3.0167 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260101622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:01 Heat of formation + Delta-G solvation = -14.380209 kcal Electronic energy + Delta-G solvation = -17559.373245 eV Core-core repulsion = 15043.921625 eV Total energy + Delta-G solvation = -2515.451619 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.62427 -37.10585 -34.10504 -32.14963 -31.23830 -28.91125 -28.39574 -27.12546 -24.92255 -22.48235 -21.74458 -20.21522 -19.97767 -19.09487 -16.53982 -16.13090 -15.59264 -14.80982 -14.67857 -14.46312 -13.87638 -13.10980 -12.96128 -12.85691 -12.59875 -12.47054 -12.07278 -11.59227 -11.25030 -11.03126 -10.94881 -10.88636 -10.79716 -10.76991 -10.58010 -10.33502 -10.27310 -10.01223 -9.67525 -9.54099 -9.05750 -8.33932 -8.28176 -7.93447 -5.97961 -4.00916 1.81671 1.88535 3.33736 3.38301 3.40626 4.19852 4.47310 4.85619 4.96106 5.01323 5.31177 5.36570 5.37483 5.43905 5.52306 5.69342 5.80661 5.83633 5.85367 5.90808 5.95474 6.07256 6.12889 6.19477 6.26218 6.34858 6.44004 6.46898 6.60932 6.64895 6.68481 6.76508 6.91613 7.02709 7.05783 7.27802 7.51589 7.71233 7.86020 8.02832 8.42813 9.05917 9.62833 11.12800 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.007268 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.122856 B = 3851.806425 C = 4863.386272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.032 3.968 10 C -0.082 4.082 11 C -0.056 4.056 12 C -0.121 4.121 13 C -0.127 4.127 14 C -0.140 4.140 15 C -0.117 4.117 16 C -0.070 4.070 17 C -0.059 4.059 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.116 4.116 22 H 0.261 0.739 23 H 0.021 0.979 24 H 0.015 0.985 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 -13.138 -5.359 14.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.005 4.005 10 C -0.120 4.120 11 C -0.056 4.056 12 C -0.139 4.139 13 C -0.145 4.145 14 C -0.158 4.158 15 C -0.135 4.135 16 C -0.070 4.070 17 C -0.077 4.077 18 C -0.153 4.153 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.154 4.154 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.033 0.967 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.129 -13.011 -5.364 14.118 hybrid contribution 0.288 0.946 0.141 0.999 sum 1.417 -12.064 -5.223 13.222 Atomic orbital electron populations 1.69960 1.06007 1.26636 1.50639 1.25000 0.94810 0.99110 0.95345 0.86694 0.79619 0.83293 0.78611 1.20250 1.21308 1.20269 1.21226 0.92967 0.91034 1.50842 0.92749 1.19060 0.93607 0.90252 0.97571 1.20874 0.98480 0.91499 1.01098 1.20247 0.96876 0.96300 0.92171 1.21055 0.99758 0.95253 0.97817 1.21015 0.99503 0.96397 0.97568 1.20926 1.01923 1.00093 0.92817 1.20858 0.99637 0.95479 0.97531 1.19643 0.98228 0.94719 0.94440 1.21107 0.97027 0.98579 0.91003 1.22605 0.99961 0.98608 0.94143 1.22354 0.96707 1.00105 0.97028 1.22131 0.96353 1.00732 0.96859 1.22223 0.96893 1.02507 0.93730 0.92981 0.96107 0.96673 0.92490 0.91967 0.86409 0.86915 0.87024 0.86808 0.88324 0.91804 0.91640 0.92222 0.91580 0.92418 0.91992 0.92013 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.83 4.86 -27.88 -0.14 0.70 16 10 C -0.08 -1.73 4.59 -27.88 -0.13 -1.86 16 11 C -0.06 -1.06 5.13 -104.62 -0.54 -1.59 16 12 C -0.12 -2.09 9.68 -39.59 -0.38 -2.48 16 13 C -0.13 -1.92 10.05 -39.58 -0.40 -2.31 16 14 C -0.14 -2.01 10.05 -39.59 -0.40 -2.41 16 15 C -0.12 -1.78 8.16 -39.59 -0.32 -2.10 16 16 C -0.07 -1.21 4.90 -104.62 -0.51 -1.72 16 17 C -0.06 -0.96 2.64 -90.11 -0.24 -1.20 16 18 C -0.12 -1.55 6.26 -24.74 -0.15 -1.70 16 19 C -0.12 -1.52 6.83 -25.07 -0.17 -1.69 16 20 C -0.12 -1.60 6.80 -25.61 -0.17 -1.77 16 21 C -0.12 -1.82 6.29 -25.61 -0.16 -1.99 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.02 0.57 7.78 -51.93 -0.40 0.16 16 24 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 26 H 0.06 1.27 6.36 -51.93 -0.33 0.94 16 27 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 28 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 29 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.11 1.51 7.27 -52.49 -0.38 1.12 16 31 H 0.10 1.84 5.43 -51.93 -0.28 1.56 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.82 6.81 -51.93 -0.35 0.47 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.94 7.07 -51.93 -0.37 0.58 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 310.94 15.07 4.69 4.69 Total: -1.00 -29.73 310.94 -10.03 -39.76 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.31 Total: 0.65 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: -4.13 Total: -35.59 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.73 -10.03 -39.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260101622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.378 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds