Wall clock time and date at job start Mon Mar 30 2020 07:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00176 * 2 1 4 4 H 1.48493 * 109.47254 * 239.99540 * 3 2 1 5 5 H 1.48506 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47455 * 119.99502 * 3 2 1 7 7 C 1.37881 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00161 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99737 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46739 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46739 * 179.97438 * 10 9 7 12 12 C 1.38253 * 120.00062 * 265.20907 * 11 10 9 13 13 C 1.38212 * 119.99580 * 180.23538 * 12 11 10 14 14 C 1.38258 * 120.00361 * 359.80577 * 13 12 11 15 15 C 1.38205 * 120.00034 * 359.97438 * 14 13 12 16 16 C 1.38224 * 119.99914 * 84.99885 * 11 10 9 17 17 C 1.50704 * 119.99937 * 359.97438 * 16 11 10 18 18 C 1.54887 * 110.48381 * 124.95067 * 17 16 11 19 19 C 1.54893 * 102.74533 * 156.62255 * 18 17 16 20 20 C 1.54266 * 104.19500 * 322.05712 * 19 18 17 21 21 C 1.53872 * 106.60044 * 23.61099 * 20 19 18 22 22 H 0.97004 * 120.00272 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.46995 * 60.00020 * 9 7 2 24 24 H 1.09001 * 109.46841 * 299.99964 * 9 7 2 25 25 H 1.08993 * 109.47423 * 60.00206 * 10 9 7 26 26 H 1.09001 * 109.47363 * 299.99568 * 10 9 7 27 27 H 1.07996 * 119.99910 * 0.05864 * 12 11 10 28 28 H 1.08011 * 119.99465 * 179.83292 * 13 12 11 29 29 H 1.07999 * 119.99912 * 179.97438 * 14 13 12 30 30 H 1.07996 * 120.00492 * 180.02562 * 15 14 13 31 31 H 1.09001 * 110.53750 * 2.33876 * 17 16 11 32 32 H 1.09001 * 110.75744 * 274.93157 * 18 17 16 33 33 H 1.09000 * 110.75698 * 38.30975 * 18 17 16 34 34 H 1.09002 * 110.48578 * 203.38190 * 19 18 17 35 35 H 1.08998 * 110.60430 * 80.79077 * 19 18 17 36 36 H 1.09002 * 110.02957 * 264.32709 * 20 19 18 37 37 H 1.09000 * 110.07144 * 142.92082 * 20 19 18 38 38 H 1.09003 * 110.03622 * 240.71485 * 21 20 19 39 39 H 1.09003 * 110.07498 * 119.30332 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4917 -4.9672 0.0025 12 6 1.2322 -5.6150 1.1959 13 6 0.5453 -6.8144 1.1960 14 6 0.1143 -7.3643 0.0030 15 6 0.3698 -6.7145 -1.1897 16 6 1.0563 -5.5144 -1.1898 17 6 1.3346 -4.8056 -2.4903 18 6 2.0700 -5.7484 -3.4749 19 6 1.7323 -5.1319 -4.8551 20 6 0.2675 -4.6686 -4.7143 21 6 0.0147 -4.4612 -3.2107 22 1 -0.4851 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8712 -3.6040 0.8922 26 1 2.8726 -3.6048 -0.8877 27 1 1.5686 -5.1852 2.1279 28 1 0.3449 -7.3218 2.1282 29 1 -0.4220 -8.3017 0.0031 30 1 0.0329 -7.1438 -2.1216 31 1 1.9209 -3.9033 -2.3162 32 1 3.1452 -5.7305 -3.2966 33 1 1.6817 -6.7641 -3.4001 34 1 1.8211 -5.8827 -5.6403 35 1 2.3824 -4.2826 -5.0653 36 1 -0.4049 -5.4329 -5.1040 37 1 0.1183 -3.7316 -5.2508 38 1 -0.7804 -5.1247 -2.8707 39 1 -0.2568 -3.4235 -3.0167 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260101622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:00 Heat of formation + Delta-G solvation = -27.900233 kcal Electronic energy + Delta-G solvation = -17559.959517 eV Core-core repulsion = 15043.921625 eV Total energy + Delta-G solvation = -2516.037891 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.90178 -38.27483 -35.99009 -34.02108 -32.47797 -30.62325 -29.52711 -28.37153 -26.81210 -23.79929 -23.47035 -21.56171 -21.20325 -20.36802 -18.56611 -17.53659 -16.88487 -16.54365 -15.98144 -15.93590 -15.10072 -14.62810 -14.39115 -14.20139 -14.12198 -13.99166 -13.74638 -13.13615 -12.87756 -12.69390 -12.56573 -12.16041 -12.13579 -12.01361 -11.93377 -11.86742 -11.57831 -11.41493 -11.38186 -11.23808 -10.97624 -10.55882 -9.56355 -9.29456 -8.20187 -6.32469 0.56566 0.59273 1.37726 1.40977 1.48889 2.39413 2.93557 3.12045 3.70950 3.80719 3.88142 4.09257 4.15664 4.27072 4.32503 4.46702 4.56343 4.58773 4.69769 4.72527 4.83571 4.85860 4.86356 4.92786 5.02037 5.03549 5.13293 5.19961 5.30896 5.33298 5.38278 5.43199 5.50024 5.53502 5.61893 5.68835 5.75761 5.84493 6.01165 6.21265 6.26336 6.83786 7.36543 8.90852 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.007268 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.122856 B = 3851.806425 C = 4863.386272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.045 3.955 10 C -0.066 4.066 11 C -0.092 4.092 12 C -0.137 4.137 13 C -0.128 4.128 14 C -0.130 4.130 15 C -0.119 4.119 16 C -0.081 4.081 17 C -0.063 4.063 18 C -0.108 4.108 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.116 4.116 22 H 0.263 0.737 23 H -0.006 1.006 24 H -0.019 1.019 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.143 0.857 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.611 -15.022 -6.210 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.008 3.992 10 C -0.103 4.103 11 C -0.092 4.092 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.148 4.148 15 C -0.136 4.136 16 C -0.081 4.081 17 C -0.081 4.081 18 C -0.145 4.145 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.153 4.153 22 H 0.072 0.928 23 H 0.013 0.987 24 H 0.000 1.000 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.161 0.839 29 H 0.168 0.832 30 H 0.158 0.842 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.460 -14.904 -6.214 16.213 hybrid contribution 0.126 1.480 0.440 1.549 sum 1.587 -13.424 -5.774 14.699 Atomic orbital electron populations 1.70106 1.07817 1.27761 1.51441 1.25962 0.95728 1.03249 0.94632 0.85535 0.78341 0.78157 0.79246 1.19089 1.20734 1.19135 1.21667 0.93482 0.92312 1.50864 0.92218 1.18828 0.93769 0.92067 0.94516 1.20561 0.97423 0.91440 1.00925 1.20148 0.99096 0.95995 0.93933 1.21210 1.00613 0.96506 0.97178 1.21362 0.98349 0.95369 0.99450 1.21402 1.00476 1.00934 0.91942 1.21156 0.98752 0.94477 0.99238 1.19822 0.98557 0.95715 0.93957 1.21057 0.97154 0.98040 0.91879 1.22574 0.99661 0.98631 0.93622 1.22355 0.95694 1.00567 0.97136 1.22123 0.97629 1.01496 0.94381 1.22194 0.96872 1.00088 0.96174 0.92808 0.98745 1.00041 0.92635 0.91966 0.86573 0.83932 0.83244 0.84221 0.91921 0.91718 0.89887 0.89356 0.92304 0.90010 0.92322 0.91445 0.94900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.12 13.29 21.45 0.28 -57.83 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.55 -32.03 9.11 25.60 0.23 -31.80 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.05 2.51 4.86 29.85 0.15 2.65 16 10 C -0.07 -2.96 4.59 29.85 0.14 -2.83 16 11 C -0.09 -3.59 5.13 -19.86 -0.10 -3.69 16 12 C -0.14 -4.78 9.68 22.27 0.22 -4.56 16 13 C -0.13 -3.58 10.05 22.27 0.22 -3.35 16 14 C -0.13 -3.31 10.05 22.27 0.22 -3.08 16 15 C -0.12 -3.32 8.16 22.27 0.18 -3.14 16 16 C -0.08 -2.78 4.90 -19.86 -0.10 -2.87 16 17 C -0.06 -2.10 2.64 -10.46 -0.03 -2.12 16 18 C -0.11 -2.71 6.26 31.89 0.20 -2.51 16 19 C -0.12 -2.69 6.83 31.67 0.22 -2.48 16 20 C -0.12 -2.93 6.80 31.32 0.21 -2.72 16 21 C -0.12 -3.72 6.29 31.32 0.20 -3.53 16 22 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 23 H -0.01 -0.35 7.78 -2.39 -0.02 -0.37 16 24 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 25 H 0.05 2.41 8.05 -2.39 -0.02 2.39 16 26 H 0.06 2.71 6.36 -2.39 -0.02 2.70 16 27 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 28 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 29 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 30 H 0.14 3.16 7.27 -2.91 -0.02 3.14 16 31 H 0.06 2.51 5.43 -2.39 -0.01 2.50 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.81 6.81 -2.39 -0.02 1.79 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 2.04 7.07 -2.39 -0.02 2.02 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -67.06 310.94 5.73 -61.33 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 1.00 Total: 14.77 kcal Atomic # 6 Polarization: -67.85 SS G_CDS: 2.42 Total: -65.43 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.28 Total: -57.83 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -67.06 5.73 -61.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260101622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.428 kcal (2) G-P(sol) polarization free energy of solvation -67.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds