Wall clock time and date at job start Mon Mar 30 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39871 * 125.46262 * 2 1 4 4 C 1.30236 * 110.08563 * 179.97438 * 3 2 1 5 5 C 1.45926 * 107.78858 * 359.97438 * 4 3 2 6 6 C 1.39948 * 134.03341 * 180.29391 * 5 4 3 7 7 C 1.36460 * 119.63434 * 180.19012 * 6 5 4 8 8 C 1.50700 * 119.68402 * 179.73602 * 7 6 5 9 9 C 1.52999 * 109.47281 * 298.03863 * 8 7 6 10 10 C 1.53001 * 109.46976 * 178.03720 * 8 7 6 11 11 C 1.50700 * 109.47014 * 58.04251 * 8 7 6 12 12 H 1.07995 * 120.00200 * 0.08954 * 11 8 7 13 13 C 1.37883 * 119.99810 * 180.09726 * 11 8 7 14 14 N 1.31509 * 119.99882 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99778 * 179.97438 * 13 11 8 16 16 H 1.48491 * 109.47348 * 59.99308 * 15 13 11 17 17 H 1.48500 * 109.46919 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.46799 * 299.99267 * 15 13 11 19 19 C 1.38968 * 120.63062 * 359.45648 * 7 6 5 20 20 C 1.36593 * 120.81322 * 0.30070 * 19 7 6 21 21 C 1.37036 * 125.45931 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47104 * 270.02273 * 1 2 3 23 23 H 1.08994 * 109.47452 * 30.02570 * 1 2 3 24 24 H 1.08999 * 109.47031 * 150.02897 * 1 2 3 25 25 H 1.08002 * 126.10755 * 180.02562 * 4 3 2 26 26 H 1.07999 * 120.17804 * 359.92570 * 6 5 4 27 27 H 1.09002 * 109.46497 * 60.00034 * 9 8 7 28 28 H 1.09001 * 109.46934 * 299.99923 * 9 8 7 29 29 H 1.08999 * 109.47148 * 179.97438 * 9 8 7 30 30 H 1.09007 * 109.46911 * 179.97438 * 10 8 7 31 31 H 1.09003 * 109.47642 * 299.99906 * 10 8 7 32 32 H 1.09001 * 109.47235 * 60.00079 * 10 8 7 33 33 H 0.97002 * 119.99745 * 180.02562 * 14 13 11 34 34 H 1.08003 * 119.59480 * 180.27403 * 19 7 6 35 35 H 1.08005 * 120.07162 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1392 0.0000 4 6 3.5322 0.7939 0.0005 5 6 3.5936 -0.6641 0.0016 6 6 4.6398 -1.5936 0.0076 7 6 4.3564 -2.9285 0.0028 8 6 5.4821 -3.9304 0.0033 9 6 6.3178 -3.7592 -1.2668 10 6 4.9044 -5.3465 0.0467 11 6 6.3536 -3.7062 1.2121 12 1 6.1153 -2.9180 1.9110 13 6 7.4553 -4.5072 1.4258 14 7 7.7453 -5.4671 0.5750 15 14 8.5360 -4.2288 2.9239 16 1 7.7258 -4.3966 4.1569 17 1 9.6462 -5.2151 2.9235 18 1 9.0950 -2.8535 2.8822 19 6 3.0396 -3.3727 0.0033 20 6 2.0016 -2.4849 0.0024 21 6 2.2600 -1.1162 0.0005 22 1 -0.3633 0.0004 1.0277 23 1 -0.3634 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 4.3773 1.4664 0.0011 26 1 5.6657 -1.2563 0.0118 27 1 6.7293 -2.7503 -1.2976 28 1 5.6874 -3.9214 -2.1411 29 1 7.1322 -4.4836 -1.2662 30 1 5.7187 -6.0712 0.0466 31 1 4.3090 -5.4685 0.9516 32 1 4.2740 -5.5087 -0.8276 33 1 8.5202 -6.0309 0.7255 34 1 2.8345 -4.4331 0.0039 35 1 0.9828 -2.8434 0.0024 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260117613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:36 Heat of formation + Delta-G solvation = 84.910847 kcal Electronic energy + Delta-G solvation = -17365.860112 eV Core-core repulsion = 14751.173733 eV Total energy + Delta-G solvation = -2614.686379 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.78144 -37.70346 -34.51519 -33.15204 -31.32931 -29.81020 -28.34767 -26.10803 -25.77383 -25.11531 -22.23692 -21.74505 -20.29653 -18.99292 -16.78112 -16.23925 -15.47433 -15.18392 -14.94084 -14.12916 -13.92036 -13.58542 -12.99803 -12.93599 -12.66196 -12.54851 -11.92912 -11.47810 -11.20307 -11.12273 -10.87219 -10.83338 -10.65630 -10.45154 -10.33594 -10.12719 -9.60429 -9.42296 -9.31616 -8.79426 -8.32620 -8.06008 -7.12783 -5.95972 -4.05843 1.49039 2.20946 2.71492 2.91952 3.32329 3.36967 3.40600 4.38983 4.54041 4.71085 5.05123 5.15440 5.24249 5.30081 5.42045 5.49099 5.67653 5.85419 6.11944 6.23495 6.47426 6.52490 6.74333 6.82426 6.88005 6.94812 7.02155 7.16020 7.32791 7.38114 7.44895 7.61465 7.68471 7.78719 7.98943 8.09500 8.21613 8.46804 8.94334 9.59214 11.04676 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.033016 B = 0.006450 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.870486 B = 4339.770087 C = 4706.208967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.421 5.421 3 N -0.270 5.270 4 C 0.070 3.930 5 C -0.179 4.179 6 C -0.040 4.040 7 C -0.067 4.067 8 C 0.099 3.901 9 C -0.127 4.127 10 C -0.134 4.134 11 C -0.499 4.499 12 H 0.056 0.944 13 C 0.065 3.935 14 N -0.887 5.887 15 Si 0.890 3.110 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.068 4.068 20 C -0.156 4.156 21 C 0.107 3.893 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.191 0.809 26 H 0.128 0.872 27 H 0.027 0.973 28 H 0.008 0.992 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.028 0.972 32 H 0.011 0.989 33 H 0.260 0.740 34 H 0.130 0.870 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.779 6.156 -2.178 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.212 5.212 3 N -0.083 5.083 4 C -0.127 4.127 5 C -0.187 4.187 6 C -0.060 4.060 7 C -0.068 4.068 8 C 0.099 3.901 9 C -0.184 4.184 10 C -0.191 4.191 11 C -0.537 4.537 12 H 0.074 0.926 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.718 3.282 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.088 4.088 20 C -0.178 4.178 21 C -0.005 4.005 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.208 0.792 26 H 0.146 0.854 27 H 0.046 0.954 28 H 0.028 0.972 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.147 0.853 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.657 6.997 -2.206 12.938 hybrid contribution 0.990 -0.487 0.921 1.437 sum -9.668 6.510 -1.285 11.726 Atomic orbital electron populations 1.21568 0.75155 1.03472 1.02285 1.47924 1.05182 1.01314 1.66761 1.76417 1.02800 1.09360 1.19689 1.24986 0.94360 0.93646 0.99740 1.19976 0.93283 0.92944 1.12475 1.20270 0.97471 0.91644 0.96662 1.20154 0.95005 0.94772 0.96892 1.17185 0.88898 0.89159 0.94844 1.21822 1.00806 1.00882 0.94925 1.21909 1.00056 1.00734 0.96435 1.21077 1.09162 1.16210 1.07290 0.92573 1.24901 0.97331 0.95070 0.96261 1.69798 1.27558 1.19465 1.35716 0.86687 0.80087 0.77927 0.83478 1.20413 1.21366 1.20303 1.20979 0.92112 0.99511 0.96243 1.19687 0.99277 0.88842 1.10026 1.18719 0.90636 0.89267 1.01867 0.91988 0.90163 0.90275 0.79205 0.85437 0.95361 0.97243 0.89557 0.89610 0.95283 0.96963 0.92999 0.85252 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.30 11.40 59.85 0.68 1.98 16 2 N -0.42 -6.80 4.05 -65.47 -0.27 -7.06 16 3 N -0.27 -4.53 12.40 31.87 0.40 -4.14 16 4 C 0.07 1.13 12.28 -15.15 -0.19 0.95 16 5 C -0.18 -3.34 6.37 -105.20 -0.67 -4.01 16 6 C -0.04 -0.80 8.62 -39.58 -0.34 -1.15 16 7 C -0.07 -1.41 4.71 -104.99 -0.49 -1.91 16 8 C 0.10 2.33 0.57 -156.81 -0.09 2.24 16 9 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 10 C -0.13 -3.05 6.90 37.16 0.26 -2.80 16 11 C -0.50 -12.94 7.61 -34.44 -0.26 -13.21 16 12 H 0.06 1.48 7.53 -52.49 -0.40 1.09 16 13 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 14 N -0.89 -23.62 9.35 55.43 0.52 -23.10 16 15 Si 0.89 20.67 29.54 -169.99 -5.02 15.64 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.07 -1.28 8.90 -39.91 -0.35 -1.64 16 20 C -0.16 -2.66 9.97 -39.79 -0.40 -3.05 16 21 C 0.11 1.92 6.87 -84.17 -0.58 1.34 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.19 2.33 8.06 -52.49 -0.42 1.91 16 26 H 0.13 2.54 7.58 -52.49 -0.40 2.14 16 27 H 0.03 0.62 7.46 -51.93 -0.39 0.24 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 2.18 6.06 -51.93 -0.31 1.87 16 30 H 0.09 2.15 6.08 -51.92 -0.32 1.84 16 31 H 0.03 0.64 7.58 -51.93 -0.39 0.24 16 32 H 0.01 0.24 7.41 -51.93 -0.38 -0.15 16 33 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.13 2.28 5.83 -52.48 -0.31 1.98 16 35 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 LS Contribution 286.60 15.07 4.32 4.32 Total: -1.00 -28.88 286.60 -6.85 -35.72 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.57 Total: 0.89 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -2.23 Total: -22.27 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.65 Total: -34.30 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.88 -6.85 -35.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260117613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.633 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds