Wall clock time and date at job start Mon Mar 30 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39871 * 125.46262 * 2 1 4 4 C 1.30236 * 110.08563 * 179.97438 * 3 2 1 5 5 C 1.45926 * 107.78858 * 359.97438 * 4 3 2 6 6 C 1.39948 * 134.03341 * 180.29391 * 5 4 3 7 7 C 1.36460 * 119.63434 * 180.19012 * 6 5 4 8 8 C 1.50700 * 119.68402 * 179.73602 * 7 6 5 9 9 C 1.52999 * 109.47281 * 298.03863 * 8 7 6 10 10 C 1.53001 * 109.46976 * 178.03720 * 8 7 6 11 11 C 1.50700 * 109.47014 * 58.04251 * 8 7 6 12 12 H 1.07995 * 120.00200 * 0.08954 * 11 8 7 13 13 C 1.37883 * 119.99810 * 180.09726 * 11 8 7 14 14 N 1.31509 * 119.99882 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99778 * 179.97438 * 13 11 8 16 16 H 1.48491 * 109.47348 * 59.99308 * 15 13 11 17 17 H 1.48500 * 109.46919 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.46799 * 299.99267 * 15 13 11 19 19 C 1.38968 * 120.63062 * 359.45648 * 7 6 5 20 20 C 1.36593 * 120.81322 * 0.30070 * 19 7 6 21 21 C 1.37036 * 125.45931 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47104 * 270.02273 * 1 2 3 23 23 H 1.08994 * 109.47452 * 30.02570 * 1 2 3 24 24 H 1.08999 * 109.47031 * 150.02897 * 1 2 3 25 25 H 1.08002 * 126.10755 * 180.02562 * 4 3 2 26 26 H 1.07999 * 120.17804 * 359.92570 * 6 5 4 27 27 H 1.09002 * 109.46497 * 60.00034 * 9 8 7 28 28 H 1.09001 * 109.46934 * 299.99923 * 9 8 7 29 29 H 1.08999 * 109.47148 * 179.97438 * 9 8 7 30 30 H 1.09007 * 109.46911 * 179.97438 * 10 8 7 31 31 H 1.09003 * 109.47642 * 299.99906 * 10 8 7 32 32 H 1.09001 * 109.47235 * 60.00079 * 10 8 7 33 33 H 0.97002 * 119.99745 * 180.02562 * 14 13 11 34 34 H 1.08003 * 119.59480 * 180.27403 * 19 7 6 35 35 H 1.08005 * 120.07162 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1392 0.0000 4 6 3.5322 0.7939 0.0005 5 6 3.5936 -0.6641 0.0016 6 6 4.6398 -1.5936 0.0076 7 6 4.3564 -2.9285 0.0028 8 6 5.4821 -3.9304 0.0033 9 6 6.3178 -3.7592 -1.2668 10 6 4.9044 -5.3465 0.0467 11 6 6.3536 -3.7062 1.2121 12 1 6.1153 -2.9180 1.9110 13 6 7.4553 -4.5072 1.4258 14 7 7.7453 -5.4671 0.5750 15 14 8.5360 -4.2288 2.9239 16 1 7.7258 -4.3966 4.1569 17 1 9.6462 -5.2151 2.9235 18 1 9.0950 -2.8535 2.8822 19 6 3.0396 -3.3727 0.0033 20 6 2.0016 -2.4849 0.0024 21 6 2.2600 -1.1162 0.0005 22 1 -0.3633 0.0004 1.0277 23 1 -0.3634 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 4.3773 1.4664 0.0011 26 1 5.6657 -1.2563 0.0118 27 1 6.7293 -2.7503 -1.2976 28 1 5.6874 -3.9214 -2.1411 29 1 7.1322 -4.4836 -1.2662 30 1 5.7187 -6.0712 0.0466 31 1 4.3090 -5.4685 0.9516 32 1 4.2740 -5.5087 -0.8276 33 1 8.5202 -6.0309 0.7255 34 1 2.8345 -4.4331 0.0039 35 1 0.9828 -2.8434 0.0024 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260117613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:35 Heat of formation + Delta-G solvation = 69.972428 kcal Electronic energy + Delta-G solvation = -17366.507891 eV Core-core repulsion = 14751.173733 eV Total energy + Delta-G solvation = -2615.334158 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.09508 -39.24104 -36.19152 -34.32882 -33.17999 -31.19293 -29.78343 -27.59852 -27.25926 -27.05054 -23.67273 -23.24031 -21.54009 -20.67231 -18.14290 -17.93462 -17.07996 -16.67009 -16.33820 -15.73471 -15.16319 -15.05591 -14.72514 -14.27094 -13.85059 -13.66033 -13.47787 -13.21023 -12.91580 -12.90724 -12.62862 -12.38996 -12.34175 -12.14843 -11.97566 -11.75811 -11.35070 -11.05043 -10.87781 -10.57761 -10.30290 -9.45230 -8.52522 -7.93434 -6.09271 0.12464 0.76707 1.46036 1.47564 1.53852 1.58873 1.62465 2.49617 3.04427 3.29012 3.63493 3.75527 3.95640 4.26009 4.38656 4.47085 4.54378 4.67131 4.69764 4.82970 4.89171 4.98444 5.01923 5.17172 5.21526 5.29695 5.46083 5.55006 5.63655 5.69456 5.75795 5.93689 6.04900 6.21755 6.29011 6.38519 6.54098 6.70784 6.95540 7.57499 9.03944 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.033016 B = 0.006450 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.870486 B = 4339.770087 C = 4706.208967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.421 5.421 3 N -0.280 5.280 4 C 0.069 3.931 5 C -0.200 4.200 6 C -0.050 4.050 7 C -0.090 4.090 8 C 0.093 3.907 9 C -0.118 4.118 10 C -0.124 4.124 11 C -0.510 4.510 12 H 0.044 0.956 13 C 0.026 3.974 14 N -0.903 5.903 15 Si 0.940 3.060 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.276 1.276 19 C -0.079 4.079 20 C -0.142 4.142 21 C 0.099 3.901 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.221 0.779 26 H 0.117 0.883 27 H 0.025 0.975 28 H 0.021 0.979 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.033 0.967 33 H 0.258 0.742 34 H 0.139 0.861 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.636 7.037 -2.067 13.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.211 5.211 3 N -0.092 5.092 4 C -0.127 4.127 5 C -0.207 4.207 6 C -0.070 4.070 7 C -0.092 4.092 8 C 0.093 3.907 9 C -0.175 4.175 10 C -0.181 4.181 11 C -0.549 4.549 12 H 0.062 0.938 13 C -0.173 4.173 14 N -0.543 5.543 15 Si 0.767 3.233 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.100 4.100 20 C -0.164 4.164 21 C -0.015 4.015 22 H 0.094 0.906 23 H 0.113 0.887 24 H 0.119 0.881 25 H 0.238 0.762 26 H 0.135 0.865 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.157 0.843 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.540 7.893 -2.095 14.965 hybrid contribution 1.467 -0.682 0.870 1.837 sum -11.073 7.211 -1.225 13.271 Atomic orbital electron populations 1.21990 0.72340 1.05373 1.03831 1.48353 1.06760 1.00418 1.65584 1.76402 1.03086 1.09941 1.19806 1.25474 0.95176 0.93028 0.99049 1.20202 0.93483 0.94101 1.12947 1.20179 0.97516 0.91848 0.97500 1.19997 0.95323 0.94568 0.99309 1.17155 0.89606 0.90256 0.93686 1.21685 1.00245 0.99866 0.95741 1.21758 0.99327 0.99690 0.97368 1.21303 1.09822 1.15694 1.08035 0.93815 1.25475 0.98426 0.95117 0.98331 1.69922 1.27744 1.19897 1.36692 0.85898 0.78721 0.77762 0.80898 1.20484 1.21089 1.20124 1.21053 0.91592 1.00404 0.96909 1.19967 1.00508 0.88164 1.07773 1.18971 0.90856 0.90177 1.01493 0.90558 0.88651 0.88130 0.76242 0.86545 0.95623 0.95947 0.91956 0.92246 0.95285 0.94856 0.93218 0.84350 0.83306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.93 11.40 127.77 1.46 3.38 16 2 N -0.42 -12.35 4.05 -361.05 -1.46 -13.81 16 3 N -0.28 -8.72 12.40 -53.09 -0.66 -9.38 16 4 C 0.07 2.12 12.28 86.92 1.07 3.19 16 5 C -0.20 -7.21 6.37 -20.24 -0.13 -7.34 16 6 C -0.05 -2.01 8.62 22.27 0.19 -1.82 16 7 C -0.09 -3.80 4.71 -20.10 -0.09 -3.89 16 8 C 0.09 4.41 0.57 -53.67 -0.03 4.38 16 9 C -0.12 -5.54 8.08 71.98 0.58 -4.96 16 10 C -0.12 -5.65 6.90 71.98 0.50 -5.15 16 11 C -0.51 -26.88 7.61 25.60 0.19 -26.69 16 12 H 0.04 2.35 7.53 -2.91 -0.02 2.33 16 13 C 0.03 1.35 5.15 84.66 0.44 1.78 16 14 N -0.90 -48.96 9.35 21.45 0.20 -48.76 16 15 Si 0.94 42.77 29.54 68.60 2.03 44.79 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 C -0.08 -2.86 8.90 22.06 0.20 -2.66 16 20 C -0.14 -4.43 9.97 22.14 0.22 -4.21 16 21 C 0.10 3.30 6.87 39.21 0.27 3.57 16 22 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.22 4.96 8.06 -2.91 -0.02 4.94 16 26 H 0.12 4.77 7.58 -2.91 -0.02 4.75 16 27 H 0.02 1.16 7.46 -2.39 -0.02 1.14 16 28 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 3.22 6.06 -2.39 -0.01 3.20 16 30 H 0.06 3.02 6.08 -2.38 -0.01 3.00 16 31 H 0.03 1.27 7.58 -2.39 -0.02 1.25 16 32 H 0.03 1.33 7.41 -2.39 -0.02 1.31 16 33 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 34 H 0.14 4.63 5.83 -2.91 -0.02 4.61 16 35 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -61.51 286.60 6.05 -55.47 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.08 Total: 12.10 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 4.86 Total: -40.42 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -1.92 Total: -71.95 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -61.51 6.05 -55.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260117613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.442 kcal (2) G-P(sol) polarization free energy of solvation -61.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds