Wall clock time and date at job start Mon Mar 30 2020 05:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37794 * 120.11218 * 2 1 4 4 C 1.38783 * 120.66965 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.73534 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47526 * 340.00150 * 5 4 3 7 7 N 1.46901 * 109.47201 * 219.99619 * 5 4 3 8 8 C 1.50702 * 109.46809 * 100.00263 * 5 4 3 9 9 H 1.08000 * 120.00294 * 359.97438 * 8 5 4 10 10 C 1.37876 * 119.99852 * 180.02562 * 8 5 4 11 11 N 1.31516 * 120.00094 * 359.97438 * 10 8 5 12 12 Si 1.86799 * 120.00122 * 179.97438 * 10 8 5 13 13 H 1.48499 * 109.47132 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47333 * 119.99749 * 12 10 8 15 15 H 1.48508 * 109.46803 * 239.99967 * 12 10 8 16 16 C 1.36657 * 120.52676 * 0.02827 * 4 3 2 17 17 C 1.39592 * 119.76456 * 359.97438 * 16 4 3 18 18 C 1.46496 * 134.03027 * 180.02562 * 17 16 4 19 19 C 1.34235 * 106.99872 * 179.97438 * 18 17 16 20 20 N 1.36842 * 109.93422 * 359.97438 * 19 18 17 21 21 C 1.46503 * 125.05762 * 180.02562 * 20 19 18 22 22 C 1.37689 * 109.87583 * 0.02562 * 20 19 18 23 23 H 1.09001 * 109.47227 * 269.98030 * 1 2 3 24 24 H 1.08992 * 109.47611 * 29.97748 * 1 2 3 25 25 H 1.08997 * 109.47134 * 149.97983 * 1 2 3 26 26 H 1.07997 * 119.65947 * 0.02562 * 3 2 1 27 27 H 1.00897 * 111.00543 * 300.00686 * 7 5 4 28 28 H 1.00908 * 110.99873 * 63.95760 * 7 5 4 29 29 H 0.97003 * 120.00298 * 179.97438 * 11 10 8 30 30 H 1.08003 * 120.12237 * 179.97438 * 16 4 3 31 31 H 1.07998 * 126.49904 * 359.68776 * 18 17 16 32 32 H 1.07993 * 125.03706 * 179.97438 * 19 18 17 33 33 H 1.08998 * 109.46979 * 269.95965 * 21 20 19 34 34 H 1.08998 * 109.47305 * 29.96448 * 21 20 19 35 35 H 1.09002 * 109.46602 * 149.95914 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1920 0.0000 4 6 3.5860 1.2055 -0.0005 5 6 4.3207 2.5213 0.0001 6 1 3.6546 3.3095 -0.3506 7 7 5.4855 2.4321 -0.8906 8 6 4.7816 2.8385 1.3994 9 1 4.5639 2.1559 2.2075 10 6 5.4803 4.0008 1.6481 11 7 5.7450 4.8324 0.6642 12 14 6.0510 4.3945 3.3827 13 1 5.6294 3.3067 4.3014 14 1 7.5310 4.5134 3.4018 15 1 5.4456 5.6768 3.8238 16 6 4.2916 0.0351 -0.0017 17 6 3.6116 -1.1840 -0.0017 18 6 4.0355 -2.5863 -0.0023 19 6 2.9202 -3.3333 -0.0015 20 7 1.8166 -2.5242 0.0001 21 6 0.4289 -2.9938 0.0019 22 6 2.2048 -1.2032 -0.0002 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8901 -0.5134 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6545 2.1251 0.0004 27 1 6.1187 1.7079 -0.5866 28 1 5.1990 2.2840 -1.8468 29 1 6.2363 5.6503 0.8392 30 1 5.3714 0.0533 -0.0025 31 1 5.0523 -2.9500 -0.0075 32 1 2.8972 -4.4130 -0.0020 33 1 0.0832 -3.1094 -1.0253 34 1 0.3707 -3.9536 0.5151 35 1 -0.1996 -2.2675 0.5173 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260139336.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:45 Heat of formation + Delta-G solvation = 63.751446 kcal Electronic energy + Delta-G solvation = -17204.611386 eV Core-core repulsion = 14589.007466 eV Total energy + Delta-G solvation = -2615.603920 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.94487 -37.29424 -34.29126 -33.30703 -31.54060 -29.82423 -28.49265 -27.42375 -25.85380 -24.87048 -22.64502 -21.27287 -19.77316 -19.25325 -16.66145 -16.12887 -15.85612 -15.19663 -14.71459 -14.22820 -14.08208 -13.66240 -13.36184 -13.25632 -12.77606 -12.56055 -12.44679 -12.23056 -12.02533 -11.79054 -11.20106 -11.10143 -10.79786 -10.64775 -10.41167 -10.17924 -9.65694 -9.07728 -8.95815 -8.34869 -7.52135 -7.12332 -6.83646 -5.78904 -3.92793 1.65636 2.30753 3.06494 3.08891 3.38156 3.46222 3.50993 4.47278 4.62945 4.77185 4.99116 5.11504 5.15803 5.26009 5.35617 5.45641 5.49710 5.75841 5.77396 5.93894 6.05178 6.07060 6.19824 6.41435 6.50185 6.55507 6.66300 7.14350 7.21092 7.27775 7.30703 7.63877 7.75999 7.82644 8.00734 8.31078 8.75192 9.12628 9.26284 9.75267 11.25269 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.006095 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.320939 B = 4592.556766 C = 4768.802284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.111 4.111 3 C -0.089 4.089 4 C -0.095 4.095 5 C 0.257 3.743 6 H 0.044 0.956 7 N -0.810 5.810 8 C -0.526 4.526 9 H 0.053 0.947 10 C 0.082 3.918 11 N -0.849 5.849 12 Si 0.882 3.118 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.285 1.285 16 C -0.082 4.082 17 C -0.105 4.105 18 C -0.205 4.205 19 C 0.034 3.966 20 N -0.493 5.493 21 C 0.076 3.924 22 C 0.082 3.918 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.120 0.880 27 H 0.317 0.683 28 H 0.297 0.703 29 H 0.254 0.746 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.160 0.840 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.539 -14.623 -2.543 17.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.114 4.114 3 C -0.108 4.108 4 C -0.098 4.098 5 C 0.147 3.853 6 H 0.062 0.938 7 N -0.336 5.336 8 C -0.564 4.564 9 H 0.072 0.928 10 C -0.124 4.124 11 N -0.484 5.484 12 Si 0.709 3.291 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.212 1.212 16 C -0.101 4.101 17 C -0.109 4.109 18 C -0.230 4.230 19 C -0.090 4.090 20 N -0.178 5.178 21 C -0.066 4.066 22 C -0.022 4.022 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.138 0.862 27 H 0.129 0.871 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.134 0.866 31 H 0.158 0.842 32 H 0.177 0.823 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.613 -13.806 -2.373 16.990 hybrid contribution -0.004 -0.883 0.857 1.231 sum -9.617 -14.689 -1.516 17.623 Atomic orbital electron populations 1.20837 0.92356 1.02097 1.01496 1.18764 0.94644 0.90400 1.07576 1.20739 0.94249 0.95766 1.00071 1.21211 0.93739 0.98732 0.96120 1.18133 0.87520 0.86254 0.93382 0.93827 1.59229 1.18389 1.53188 1.02750 1.20918 1.37750 1.05781 0.91995 0.92847 1.24953 0.95387 0.96095 0.95945 1.70122 1.37929 1.10203 1.30134 0.86730 0.78471 0.78129 0.85727 1.19931 1.21082 1.21170 1.20053 0.99366 0.89822 1.00850 1.19211 0.91888 0.93480 1.06346 1.21645 0.97628 0.91320 1.12450 1.21590 0.85415 0.95844 1.06151 1.43611 1.05416 1.04125 1.64664 1.22039 0.81311 1.00919 1.02310 1.17964 0.93640 0.83805 1.06792 0.92000 0.91575 0.92400 0.86176 0.87054 0.89270 0.93629 0.86575 0.84185 0.82311 0.91995 0.90695 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 8.80 36.00 0.32 -1.14 16 2 C -0.11 -1.95 5.89 -104.47 -0.62 -2.56 16 3 C -0.09 -1.77 9.29 -39.54 -0.37 -2.13 16 4 C -0.09 -2.09 4.86 -104.99 -0.51 -2.60 16 5 C 0.26 6.49 2.84 -70.01 -0.20 6.29 16 6 H 0.04 1.20 7.99 -51.93 -0.41 0.79 16 7 N -0.81 -19.50 8.36 -6.65 -0.06 -19.56 16 8 C -0.53 -14.76 8.70 -34.44 -0.30 -15.06 16 9 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 10 C 0.08 2.34 5.39 -17.82 -0.10 2.24 16 11 N -0.85 -25.08 12.77 55.43 0.71 -24.37 16 12 Si 0.88 21.77 29.54 -169.99 -5.02 16.75 16 13 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 C -0.08 -1.70 9.27 -39.65 -0.37 -2.07 16 17 C -0.11 -2.00 6.37 -105.14 -0.67 -2.67 16 18 C -0.20 -3.21 11.08 -37.67 -0.42 -3.63 16 19 C 0.03 0.46 11.29 -16.73 -0.19 0.27 16 20 N -0.49 -7.02 3.18 -121.80 -0.39 -7.41 16 21 C 0.08 0.73 9.76 59.85 0.58 1.32 16 22 C 0.08 1.45 6.74 -83.99 -0.57 0.89 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 25 H 0.06 0.64 5.52 -51.93 -0.29 0.36 16 26 H 0.12 2.28 8.02 -52.49 -0.42 1.86 16 27 H 0.32 7.31 7.31 -39.29 -0.29 7.03 16 28 H 0.30 6.46 9.06 -39.29 -0.36 6.11 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.12 2.38 6.62 -52.48 -0.35 2.03 16 31 H 0.14 1.90 8.06 -52.49 -0.42 1.47 16 32 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.79 5.69 -51.93 -0.30 0.49 16 LS Contribution 290.31 15.07 4.37 4.37 Total: -1.00 -32.28 290.31 -8.26 -40.54 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -4.48 Total: 10.53 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -3.40 Total: -20.85 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.26 Total: -51.34 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.28 -8.26 -40.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139336.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.293 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds