Wall clock time and date at job start Mon Mar 30 2020 05:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37794 * 120.11218 * 2 1 4 4 C 1.38783 * 120.66965 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.73534 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47526 * 340.00150 * 5 4 3 7 7 N 1.46901 * 109.47201 * 219.99619 * 5 4 3 8 8 C 1.50702 * 109.46809 * 100.00263 * 5 4 3 9 9 H 1.08000 * 120.00294 * 359.97438 * 8 5 4 10 10 C 1.37876 * 119.99852 * 180.02562 * 8 5 4 11 11 N 1.31516 * 120.00094 * 359.97438 * 10 8 5 12 12 Si 1.86799 * 120.00122 * 179.97438 * 10 8 5 13 13 H 1.48499 * 109.47132 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47333 * 119.99749 * 12 10 8 15 15 H 1.48508 * 109.46803 * 239.99967 * 12 10 8 16 16 C 1.36657 * 120.52676 * 0.02827 * 4 3 2 17 17 C 1.39592 * 119.76456 * 359.97438 * 16 4 3 18 18 C 1.46496 * 134.03027 * 180.02562 * 17 16 4 19 19 C 1.34235 * 106.99872 * 179.97438 * 18 17 16 20 20 N 1.36842 * 109.93422 * 359.97438 * 19 18 17 21 21 C 1.46503 * 125.05762 * 180.02562 * 20 19 18 22 22 C 1.37689 * 109.87583 * 0.02562 * 20 19 18 23 23 H 1.09001 * 109.47227 * 269.98030 * 1 2 3 24 24 H 1.08992 * 109.47611 * 29.97748 * 1 2 3 25 25 H 1.08997 * 109.47134 * 149.97983 * 1 2 3 26 26 H 1.07997 * 119.65947 * 0.02562 * 3 2 1 27 27 H 1.00897 * 111.00543 * 300.00686 * 7 5 4 28 28 H 1.00908 * 110.99873 * 63.95760 * 7 5 4 29 29 H 0.97003 * 120.00298 * 179.97438 * 11 10 8 30 30 H 1.08003 * 120.12237 * 179.97438 * 16 4 3 31 31 H 1.07998 * 126.49904 * 359.68776 * 18 17 16 32 32 H 1.07993 * 125.03706 * 179.97438 * 19 18 17 33 33 H 1.08998 * 109.46979 * 269.95965 * 21 20 19 34 34 H 1.08998 * 109.47305 * 29.96448 * 21 20 19 35 35 H 1.09002 * 109.46602 * 149.95914 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1920 0.0000 4 6 3.5860 1.2055 -0.0005 5 6 4.3207 2.5213 0.0001 6 1 3.6546 3.3095 -0.3506 7 7 5.4855 2.4321 -0.8906 8 6 4.7816 2.8385 1.3994 9 1 4.5639 2.1559 2.2075 10 6 5.4803 4.0008 1.6481 11 7 5.7450 4.8324 0.6642 12 14 6.0510 4.3945 3.3827 13 1 5.6294 3.3067 4.3014 14 1 7.5310 4.5134 3.4018 15 1 5.4456 5.6768 3.8238 16 6 4.2916 0.0351 -0.0017 17 6 3.6116 -1.1840 -0.0017 18 6 4.0355 -2.5863 -0.0023 19 6 2.9202 -3.3333 -0.0015 20 7 1.8166 -2.5242 0.0001 21 6 0.4289 -2.9938 0.0019 22 6 2.2048 -1.2032 -0.0002 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8901 -0.5134 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6545 2.1251 0.0004 27 1 6.1187 1.7079 -0.5866 28 1 5.1990 2.2840 -1.8468 29 1 6.2363 5.6503 0.8392 30 1 5.3714 0.0533 -0.0025 31 1 5.0523 -2.9500 -0.0075 32 1 2.8972 -4.4130 -0.0020 33 1 0.0832 -3.1094 -1.0253 34 1 0.3707 -3.9536 0.5151 35 1 -0.1996 -2.2675 0.5173 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260139336.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:45 Heat of formation + Delta-G solvation = 43.027490 kcal Electronic energy + Delta-G solvation = -17205.510044 eV Core-core repulsion = 14589.007466 eV Total energy + Delta-G solvation = -2616.502578 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.19014 -38.80033 -35.98733 -34.61659 -33.47745 -31.22563 -29.91323 -28.54847 -27.88045 -26.05057 -24.36682 -22.60218 -21.26998 -20.59131 -18.49200 -17.68782 -17.14826 -16.64929 -16.22866 -15.95785 -15.78484 -15.06822 -14.46885 -14.41343 -14.18183 -14.03561 -13.62374 -13.51674 -13.42576 -13.29471 -12.99618 -12.73001 -12.56223 -12.18805 -12.00517 -11.63920 -11.58709 -11.03699 -10.54101 -10.29540 -9.02381 -8.82510 -8.29676 -7.95222 -6.17715 0.28867 0.82147 1.40957 1.42704 1.54188 1.87689 2.03779 2.47129 3.05576 3.26541 3.83401 3.97306 4.06381 4.12385 4.23109 4.45092 4.47436 4.51340 4.66835 4.67862 4.75787 4.79986 4.84491 4.99659 5.04989 5.19138 5.29390 5.41757 5.67262 5.77723 5.89389 5.92386 6.06394 6.21138 6.42823 6.57013 6.68659 7.11632 7.28446 7.54131 9.07037 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.006095 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.320939 B = 4592.556766 C = 4768.802284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.098 4.098 3 C -0.121 4.121 4 C -0.115 4.115 5 C 0.263 3.737 6 H 0.009 0.991 7 N -0.818 5.818 8 C -0.539 4.539 9 H 0.039 0.961 10 C 0.034 3.966 11 N -0.881 5.881 12 Si 0.948 3.052 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.278 1.278 16 C -0.100 4.100 17 C -0.129 4.129 18 C -0.240 4.240 19 C 0.066 3.934 20 N -0.489 5.489 21 C 0.064 3.936 22 C 0.066 3.934 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.321 0.679 28 H 0.309 0.691 29 H 0.255 0.745 30 H 0.105 0.895 31 H 0.153 0.847 32 H 0.212 0.788 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.285 -17.641 -1.974 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.101 4.101 3 C -0.140 4.140 4 C -0.119 4.119 5 C 0.153 3.847 6 H 0.027 0.973 7 N -0.345 5.345 8 C -0.578 4.578 9 H 0.057 0.943 10 C -0.169 4.169 11 N -0.517 5.517 12 Si 0.774 3.226 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.203 1.203 16 C -0.119 4.119 17 C -0.133 4.133 18 C -0.265 4.265 19 C -0.060 4.060 20 N -0.172 5.172 21 C -0.076 4.076 22 C -0.039 4.039 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.171 0.829 32 H 0.228 0.772 33 H 0.099 0.901 34 H 0.126 0.874 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.390 -16.842 -1.805 20.412 hybrid contribution 0.446 -0.128 0.639 0.789 sum -10.945 -16.971 -1.167 20.227 Atomic orbital electron populations 1.20929 0.88961 1.03817 1.02841 1.19113 0.96999 0.89417 1.04565 1.20757 0.93581 0.97028 1.02664 1.20841 0.94738 0.97393 0.98888 1.17778 0.87420 0.87323 0.92139 0.97285 1.59068 1.18463 1.53561 1.03376 1.21148 1.37830 1.05722 0.93069 0.94256 1.25685 0.95494 0.95911 0.99810 1.70241 1.38718 1.10608 1.32138 0.85694 0.78052 0.77919 0.80966 1.19884 1.20501 1.20322 1.19962 0.98835 0.90652 1.02478 1.19596 0.93177 0.94366 1.06182 1.21918 0.99583 0.89874 1.15101 1.22365 0.84077 0.97798 1.01748 1.43996 1.07692 1.02675 1.62872 1.22436 0.78486 1.02511 1.04135 1.18119 0.93274 0.85635 1.06889 0.90629 0.90894 0.89738 0.86541 0.86637 0.88033 0.93547 0.87749 0.82900 0.77163 0.90145 0.87364 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 8.80 71.23 0.63 -1.96 16 2 C -0.10 -3.37 5.89 -19.77 -0.12 -3.49 16 3 C -0.12 -5.01 9.29 22.29 0.21 -4.80 16 4 C -0.12 -5.39 4.86 -20.10 -0.10 -5.48 16 5 C 0.26 14.17 2.84 43.42 0.12 14.29 16 6 H 0.01 0.55 7.99 -2.39 -0.02 0.53 16 7 N -0.82 -41.64 8.36 -174.96 -1.46 -43.10 16 8 C -0.54 -31.68 8.70 25.60 0.22 -31.46 16 9 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 10 C 0.03 2.00 5.39 84.65 0.46 2.45 16 11 N -0.88 -53.68 12.77 21.45 0.27 -53.40 16 12 Si 0.95 45.82 29.54 68.60 2.03 47.85 16 13 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 14 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 C -0.10 -4.38 9.27 22.23 0.21 -4.17 16 17 C -0.13 -4.90 6.37 -20.20 -0.13 -5.03 16 18 C -0.24 -7.09 11.08 23.51 0.26 -6.83 16 19 C 0.07 1.46 11.29 83.00 0.94 2.40 16 20 N -0.49 -11.94 3.18 -539.28 -1.71 -13.66 16 21 C 0.06 0.89 9.76 127.77 1.25 2.13 16 22 C 0.07 2.25 6.74 39.03 0.26 2.51 16 23 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 24 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 25 H 0.08 1.54 5.52 -2.39 -0.01 1.53 16 26 H 0.12 4.72 8.02 -2.91 -0.02 4.70 16 27 H 0.32 15.70 7.31 -89.70 -0.66 15.05 16 28 H 0.31 14.24 9.06 -89.69 -0.81 13.42 16 29 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.10 4.60 6.62 -2.91 -0.02 4.58 16 31 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.21 2.46 8.06 -2.91 -0.02 2.43 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 1.20 5.69 -2.39 -0.01 1.19 16 Total: -1.00 -73.27 290.31 2.98 -70.29 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -0.35 Total: 31.44 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 4.21 Total: -39.42 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -2.90 Total: -110.16 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -73.27 2.98 -70.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139336.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.321 kcal (2) G-P(sol) polarization free energy of solvation -73.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds