Wall clock time and date at job start Mon Mar 30 2020 05:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36506 * 120.18030 * 2 1 4 4 C 1.38926 * 120.62778 * 180.02562 * 3 2 1 5 5 C 1.36634 * 120.81245 * 359.92428 * 4 3 2 6 6 C 1.39240 * 119.85482 * 0.09055 * 5 4 3 7 7 C 1.39899 * 120.18467 * 180.02562 * 2 1 3 8 8 C 1.45935 * 134.03530 * 0.02562 * 7 2 1 9 9 C 1.50703 * 126.10282 * 0.23588 * 8 7 2 10 10 H 1.08995 * 109.47276 * 351.76997 * 9 8 7 11 11 C 1.53006 * 109.46721 * 111.76495 * 9 8 7 12 12 C 1.50701 * 109.47401 * 231.76169 * 9 8 7 13 13 H 1.08004 * 119.99662 * 0.02562 * 12 9 8 14 14 C 1.37866 * 120.00043 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00024 * 180.02562 * 14 12 9 16 16 Si 1.86801 * 120.00432 * 359.97438 * 14 12 9 17 17 H 1.48500 * 109.46909 * 90.00090 * 16 14 12 18 18 H 1.48493 * 109.47592 * 210.00307 * 16 14 12 19 19 H 1.48503 * 109.47039 * 330.00223 * 16 14 12 20 20 N 1.30237 * 107.78834 * 179.97438 * 8 7 2 21 21 N 1.37046 * 133.85685 * 179.97438 * 6 5 4 22 22 C 1.46498 * 125.46084 * 0.02562 * 21 6 5 23 23 H 1.08997 * 109.46808 * 263.64516 * 1 2 3 24 24 H 1.09000 * 109.47111 * 23.64423 * 1 2 3 25 25 H 1.08995 * 109.46761 * 143.64652 * 1 2 3 26 26 H 1.07993 * 119.68513 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.59126 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.06911 * 180.02562 * 5 4 3 29 29 H 1.08994 * 109.47258 * 59.99902 * 11 9 8 30 30 H 1.09001 * 109.47064 * 180.02562 * 11 9 8 31 31 H 1.08998 * 109.47073 * 299.99912 * 11 9 8 32 32 H 0.97000 * 120.00383 * 179.97438 * 15 14 12 33 33 H 1.08994 * 109.47135 * 269.99986 * 22 21 6 34 34 H 1.09002 * 109.47109 * 29.99737 * 22 21 6 35 35 H 1.08994 * 109.47165 * 149.99364 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1800 0.0000 4 6 3.5825 1.1909 -0.0005 5 6 4.2915 0.0229 0.0005 6 6 3.6189 -1.1963 0.0002 7 6 2.2104 -1.2093 -0.0005 8 6 1.8136 -2.6137 -0.0016 9 6 0.4004 -3.1371 -0.0075 10 1 -0.2942 -2.3095 0.1362 11 6 0.1138 -3.8164 -1.3483 12 6 0.2298 -4.1357 1.1081 13 1 1.0615 -4.3678 1.7569 14 6 -0.9878 -4.7529 1.3006 15 7 -1.1368 -5.6240 2.2745 16 14 -2.4266 -4.3510 0.1790 17 1 -2.4217 -5.2757 -0.9829 18 1 -3.6982 -4.5063 0.9299 19 1 -2.3034 -2.9513 -0.3018 20 7 2.8987 -3.3338 -0.0023 21 7 4.0255 -2.5050 0.0005 22 6 5.4172 -2.9627 0.0019 23 1 -0.3633 -0.1137 1.0213 24 1 -0.3633 0.9414 -0.4122 25 1 -0.3633 -0.8276 -0.6091 26 1 1.6511 2.1140 0.0004 27 1 4.1084 2.1341 -0.0009 28 1 5.3713 0.0453 0.0005 29 1 0.8084 -4.6439 -1.4921 30 1 -0.9085 -4.1946 -1.3528 31 1 0.2371 -3.0941 -2.1552 32 1 -1.9936 -6.0581 2.4102 33 1 5.7633 -3.0761 -1.0254 34 1 6.0398 -2.2307 0.5163 35 1 5.4838 -3.9215 0.5158 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260142109.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:04 Heat of formation + Delta-G solvation = 85.930823 kcal Electronic energy + Delta-G solvation = -17548.055207 eV Core-core repulsion = 14933.413057 eV Total energy + Delta-G solvation = -2614.642150 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82456 -37.05946 -35.17685 -32.75626 -31.60268 -30.82815 -29.37730 -26.43220 -25.98392 -25.01157 -22.66120 -21.76742 -20.73221 -18.42169 -16.89777 -16.32113 -15.98994 -15.15580 -14.97357 -14.65906 -13.95861 -13.45432 -13.30400 -13.07499 -12.87600 -12.41113 -12.29957 -12.21376 -12.01059 -11.57275 -11.29315 -11.16764 -10.88889 -10.70044 -10.44279 -10.15047 -9.90976 -9.39626 -9.24404 -8.96323 -8.53912 -8.15868 -7.30574 -6.05437 -4.04768 1.36637 1.87369 2.92074 3.19085 3.28208 3.35548 3.39664 4.13466 4.40080 4.84538 4.90336 5.10646 5.18268 5.28442 5.39896 5.49059 5.57591 5.64483 5.65384 5.79576 5.99716 6.04002 6.13456 6.18743 6.38115 6.45146 6.48515 6.64185 6.70097 6.86239 6.92636 7.11770 7.23125 7.42784 7.54028 7.67192 8.39514 8.54707 9.00993 9.53516 11.07758 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025637 B = 0.008317 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.900474 B = 3365.673501 C = 4066.809813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.007 3.993 3 C -0.181 4.181 4 C -0.072 4.072 5 C -0.158 4.158 6 C 0.128 3.872 7 C -0.177 4.177 8 C 0.156 3.844 9 C 0.073 3.927 10 H 0.058 0.942 11 C -0.144 4.144 12 C -0.504 4.504 13 H 0.078 0.922 14 C 0.071 3.929 15 N -0.898 5.898 16 Si 0.884 3.116 17 H -0.278 1.278 18 H -0.296 1.296 19 H -0.264 1.264 20 N -0.248 5.248 21 N -0.425 5.425 22 C 0.117 3.883 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.157 12.205 -6.182 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.005 3.995 3 C -0.200 4.200 4 C -0.093 4.093 5 C -0.180 4.180 6 C 0.012 3.988 7 C -0.185 4.185 8 C -0.022 4.022 9 C 0.052 3.948 10 H 0.076 0.924 11 C -0.202 4.202 12 C -0.542 4.542 13 H 0.096 0.904 14 C -0.130 4.130 15 N -0.536 5.536 16 Si 0.714 3.286 17 H -0.205 1.205 18 H -0.223 1.223 19 H -0.189 1.189 20 N -0.059 5.059 21 N -0.211 5.211 22 C -0.025 4.025 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.138 0.862 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.736 10.787 -6.083 15.155 hybrid contribution -0.790 0.787 -0.458 1.206 sum 7.946 11.574 -6.541 15.488 Atomic orbital electron populations 1.21057 0.91084 1.02715 1.03529 1.19183 0.95813 0.90849 0.93684 1.20419 0.93985 0.97034 1.08604 1.20540 0.94087 0.96864 0.97763 1.19650 0.98922 0.89501 1.09938 1.18857 0.93984 0.86600 0.99311 1.19887 0.92006 0.94008 1.12648 1.23997 0.96044 0.88065 0.94120 1.18127 0.84537 0.97062 0.95055 0.92411 1.22148 1.00791 1.00216 0.97033 1.20869 0.98535 1.21971 1.12840 0.90427 1.24952 0.98284 0.94602 0.95187 1.69882 1.24955 1.27722 1.31019 0.86903 0.81843 0.79561 0.80273 1.20483 1.22348 1.18886 1.76814 0.91690 1.16967 1.20413 1.48305 1.05717 1.01394 1.65720 1.21555 0.77262 1.01527 1.02131 0.90211 0.91801 0.90109 0.86211 0.86090 0.86595 0.92294 0.93555 0.95028 0.92575 0.92033 0.90624 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.94 36.01 0.32 -1.67 16 2 C 0.01 0.12 5.88 -104.62 -0.62 -0.49 16 3 C -0.18 -2.58 9.59 -39.95 -0.38 -2.96 16 4 C -0.07 -0.95 9.96 -39.91 -0.40 -1.35 16 5 C -0.16 -2.31 9.97 -39.79 -0.40 -2.71 16 6 C 0.13 2.36 6.87 -84.17 -0.58 1.78 16 7 C -0.18 -3.58 6.15 -105.21 -0.65 -4.23 16 8 C 0.16 3.58 5.92 -80.19 -0.47 3.11 16 9 C 0.07 1.75 2.01 -92.92 -0.19 1.56 16 10 H 0.06 1.34 3.95 -51.93 -0.20 1.13 16 11 C -0.14 -3.21 8.65 37.16 0.32 -2.89 16 12 C -0.50 -14.39 9.07 -34.44 -0.31 -14.70 16 13 H 0.08 2.48 7.98 -52.48 -0.42 2.06 16 14 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 15 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 16 Si 0.88 21.45 24.37 -169.99 -4.14 17.31 16 17 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 18 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.26 -5.91 6.53 56.52 0.37 -5.54 16 20 N -0.25 -5.71 12.33 34.84 0.43 -5.28 16 21 N -0.43 -8.07 4.05 -65.47 -0.27 -8.33 16 22 C 0.12 1.56 11.40 59.85 0.68 2.24 16 23 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 24 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 25 H 0.08 1.37 5.90 -51.93 -0.31 1.06 16 26 H 0.12 1.38 8.04 -52.49 -0.42 0.95 16 27 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 285.52 15.07 4.30 4.30 Total: -1.00 -32.85 285.52 -6.17 -39.01 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.50 Total: 0.11 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -2.76 Total: -20.35 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.94 Total: -40.38 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.14 Total: 17.31 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.85 -6.17 -39.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260142109.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.944 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds