Wall clock time and date at job start Mon Mar 30 2020 05:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36506 * 120.18030 * 2 1 4 4 C 1.38926 * 120.62778 * 180.02562 * 3 2 1 5 5 C 1.36634 * 120.81245 * 359.92428 * 4 3 2 6 6 C 1.39240 * 119.85482 * 0.09055 * 5 4 3 7 7 C 1.39899 * 120.18467 * 180.02562 * 2 1 3 8 8 C 1.45935 * 134.03530 * 0.02562 * 7 2 1 9 9 C 1.50703 * 126.10282 * 0.23588 * 8 7 2 10 10 H 1.08995 * 109.47276 * 351.76997 * 9 8 7 11 11 C 1.53006 * 109.46721 * 111.76495 * 9 8 7 12 12 C 1.50701 * 109.47401 * 231.76169 * 9 8 7 13 13 H 1.08004 * 119.99662 * 0.02562 * 12 9 8 14 14 C 1.37866 * 120.00043 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00024 * 180.02562 * 14 12 9 16 16 Si 1.86801 * 120.00432 * 359.97438 * 14 12 9 17 17 H 1.48500 * 109.46909 * 90.00090 * 16 14 12 18 18 H 1.48493 * 109.47592 * 210.00307 * 16 14 12 19 19 H 1.48503 * 109.47039 * 330.00223 * 16 14 12 20 20 N 1.30237 * 107.78834 * 179.97438 * 8 7 2 21 21 N 1.37046 * 133.85685 * 179.97438 * 6 5 4 22 22 C 1.46498 * 125.46084 * 0.02562 * 21 6 5 23 23 H 1.08997 * 109.46808 * 263.64516 * 1 2 3 24 24 H 1.09000 * 109.47111 * 23.64423 * 1 2 3 25 25 H 1.08995 * 109.46761 * 143.64652 * 1 2 3 26 26 H 1.07993 * 119.68513 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.59126 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.06911 * 180.02562 * 5 4 3 29 29 H 1.08994 * 109.47258 * 59.99902 * 11 9 8 30 30 H 1.09001 * 109.47064 * 180.02562 * 11 9 8 31 31 H 1.08998 * 109.47073 * 299.99912 * 11 9 8 32 32 H 0.97000 * 120.00383 * 179.97438 * 15 14 12 33 33 H 1.08994 * 109.47135 * 269.99986 * 22 21 6 34 34 H 1.09002 * 109.47109 * 29.99737 * 22 21 6 35 35 H 1.08994 * 109.47165 * 149.99364 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1800 0.0000 4 6 3.5825 1.1909 -0.0005 5 6 4.2915 0.0229 0.0005 6 6 3.6189 -1.1963 0.0002 7 6 2.2104 -1.2093 -0.0005 8 6 1.8136 -2.6137 -0.0016 9 6 0.4004 -3.1371 -0.0075 10 1 -0.2942 -2.3095 0.1362 11 6 0.1138 -3.8164 -1.3483 12 6 0.2298 -4.1357 1.1081 13 1 1.0615 -4.3678 1.7569 14 6 -0.9878 -4.7529 1.3006 15 7 -1.1368 -5.6240 2.2745 16 14 -2.4266 -4.3510 0.1790 17 1 -2.4217 -5.2757 -0.9829 18 1 -3.6982 -4.5063 0.9299 19 1 -2.3034 -2.9513 -0.3018 20 7 2.8987 -3.3338 -0.0023 21 7 4.0255 -2.5050 0.0005 22 6 5.4172 -2.9627 0.0019 23 1 -0.3633 -0.1137 1.0213 24 1 -0.3633 0.9414 -0.4122 25 1 -0.3633 -0.8276 -0.6091 26 1 1.6511 2.1140 0.0004 27 1 4.1084 2.1341 -0.0009 28 1 5.3713 0.0453 0.0005 29 1 0.8084 -4.6439 -1.4921 30 1 -0.9085 -4.1946 -1.3528 31 1 0.2371 -3.0941 -2.1552 32 1 -1.9936 -6.0581 2.4102 33 1 5.7633 -3.0761 -1.0254 34 1 6.0398 -2.2307 0.5163 35 1 5.4838 -3.9215 0.5158 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260142109.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:03 Heat of formation + Delta-G solvation = 64.206417 kcal Electronic energy + Delta-G solvation = -17548.997248 eV Core-core repulsion = 14933.413057 eV Total energy + Delta-G solvation = -2615.584191 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.18231 -38.30304 -36.90530 -34.48776 -33.01519 -32.49992 -30.66842 -27.61809 -27.35915 -27.04504 -24.24945 -23.05898 -22.14661 -19.93774 -18.83141 -17.71938 -17.45738 -16.69591 -16.30145 -16.14794 -15.30921 -15.06851 -14.72101 -14.50355 -14.36750 -14.08281 -13.66241 -13.48248 -13.24038 -13.10626 -12.89471 -12.64362 -12.43321 -12.15544 -11.91573 -11.82355 -11.63146 -11.29407 -11.01917 -10.71633 -10.49223 -9.48509 -8.59038 -8.28351 -6.33744 0.11778 0.67052 1.33905 1.38553 1.50432 1.64993 1.68128 2.33993 2.91411 3.05860 3.59884 3.67241 3.85576 4.12145 4.31175 4.39484 4.41007 4.48358 4.49966 4.55970 4.61955 4.70207 4.76165 4.84637 4.91111 4.94905 5.05223 5.15614 5.30879 5.50770 5.54740 5.62039 5.66006 5.80813 6.07791 6.28468 6.31156 6.68705 6.92133 7.28635 8.89134 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025637 B = 0.008317 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.900474 B = 3365.673501 C = 4066.809813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.018 4.018 3 C -0.169 4.169 4 C -0.060 4.060 5 C -0.158 4.158 6 C 0.109 3.891 7 C -0.212 4.212 8 C 0.125 3.875 9 C 0.075 3.925 10 H 0.071 0.929 11 C -0.138 4.138 12 C -0.509 4.509 13 H 0.020 0.980 14 C 0.012 3.988 15 N -0.951 5.951 16 Si 0.950 3.050 17 H -0.266 1.266 18 H -0.294 1.294 19 H -0.231 1.231 20 N -0.295 5.295 21 N -0.429 5.429 22 C 0.107 3.893 23 H 0.069 0.931 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.156 0.844 27 H 0.168 0.832 28 H 0.150 0.850 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.267 0.733 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.669 16.023 -7.986 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.021 4.021 3 C -0.188 4.188 4 C -0.080 4.080 5 C -0.179 4.179 6 C -0.006 4.006 7 C -0.220 4.220 8 C -0.052 4.052 9 C 0.055 3.945 10 H 0.088 0.912 11 C -0.196 4.196 12 C -0.548 4.548 13 H 0.038 0.962 14 C -0.185 4.185 15 N -0.591 5.591 16 Si 0.775 3.225 17 H -0.192 1.192 18 H -0.221 1.221 19 H -0.154 1.154 20 N -0.107 5.107 21 N -0.217 5.217 22 C -0.033 4.033 23 H 0.088 0.912 24 H 0.118 0.882 25 H 0.081 0.919 26 H 0.173 0.827 27 H 0.186 0.814 28 H 0.167 0.833 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.275 14.624 -7.899 19.034 hybrid contribution -0.738 -0.319 0.182 0.824 sum 8.537 14.305 -7.717 18.359 Atomic orbital electron populations 1.21052 0.90545 1.03893 1.02809 1.19489 0.96639 0.90897 0.95068 1.20905 0.94870 0.97171 1.05867 1.21132 0.93859 0.98188 0.94817 1.20133 1.00765 0.88229 1.08811 1.19367 0.93819 0.87383 1.00024 1.20132 0.93458 0.93557 1.14879 1.23850 0.95362 0.90124 0.95864 1.18001 0.86460 0.96068 0.94003 0.91184 1.22039 1.00176 1.00295 0.97080 1.21020 0.96967 1.23248 1.13552 0.96167 1.25910 1.01590 0.94150 0.96846 1.70055 1.26040 1.29515 1.33490 0.85834 0.77164 0.81357 0.78161 1.19233 1.22136 1.15371 1.76612 0.93322 1.19320 1.21442 1.48582 1.06139 1.01606 1.65376 1.21936 0.75246 1.02287 1.03834 0.91224 0.88171 0.91936 0.82685 0.81416 0.83267 0.93920 0.93510 0.91973 0.92387 0.90088 0.87273 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 8.94 71.24 0.64 -3.08 16 2 C -0.02 -0.60 5.88 -19.87 -0.12 -0.71 16 3 C -0.17 -4.07 9.59 22.03 0.21 -3.86 16 4 C -0.06 -1.26 9.96 22.06 0.22 -1.04 16 5 C -0.16 -4.00 9.97 22.14 0.22 -3.78 16 6 C 0.11 3.90 6.87 39.21 0.27 4.17 16 7 C -0.21 -8.55 6.15 -20.24 -0.12 -8.67 16 8 C 0.13 5.97 5.92 44.79 0.27 6.23 16 9 C 0.08 3.71 2.01 -12.28 -0.02 3.69 16 10 H 0.07 3.26 3.95 -2.39 -0.01 3.25 16 11 C -0.14 -6.17 8.65 71.98 0.62 -5.55 16 12 C -0.51 -30.83 9.07 25.60 0.23 -30.60 16 13 H 0.02 1.40 7.98 -2.91 -0.02 1.38 16 14 C 0.01 0.70 5.45 84.65 0.46 1.16 16 15 N -0.95 -61.27 13.96 21.44 0.30 -60.97 16 16 Si 0.95 44.47 24.37 68.60 1.67 46.14 16 17 H -0.27 -11.93 6.87 99.48 0.68 -11.25 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.23 -9.50 6.53 99.48 0.65 -8.85 16 20 N -0.29 -14.24 12.33 -43.69 -0.54 -14.78 16 21 N -0.43 -16.40 4.05 -361.06 -1.46 -17.86 16 22 C 0.11 2.76 11.40 127.77 1.46 4.22 16 23 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.10 2.11 8.03 -2.39 -0.02 2.09 16 25 H 0.06 2.03 5.90 -2.39 -0.01 2.02 16 26 H 0.16 2.62 8.04 -2.91 -0.02 2.59 16 27 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 28 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 2.05 3.27 -2.39 -0.01 2.04 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -78.08 285.52 5.31 -72.77 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.01 Total: 12.51 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 4.33 Total: -37.81 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -1.70 Total: -93.61 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.67 Total: 46.14 kcal Total: -78.08 5.31 -72.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260142109.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.972 kcal (2) G-P(sol) polarization free energy of solvation -78.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds