Wall clock time and date at job start Mon Mar 30 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46938 * 2 1 4 4 C 1.50702 * 109.47224 * 179.97438 * 3 2 1 5 5 N 1.30087 * 124.97616 * 89.97557 * 4 3 2 6 6 C 1.35902 * 109.73692 * 180.02562 * 5 4 3 7 7 C 1.40572 * 107.01764 * 359.97438 * 6 5 4 8 8 C 1.38666 * 119.96372 * 180.02562 * 7 6 5 9 9 C 1.37998 * 119.83012 * 0.02562 * 8 7 6 10 10 C 1.38687 * 120.43914 * 359.72292 * 9 8 7 11 11 C 1.37755 * 120.51154 * 0.55763 * 10 9 8 12 12 C 1.50699 * 120.11363 * 179.71761 * 11 10 9 13 13 N 1.36536 * 124.97478 * 269.99998 * 4 3 2 14 14 C 1.37314 * 126.39898 * 359.95543 * 13 4 3 15 15 H 1.08001 * 119.99618 * 326.58432 * 14 13 4 16 16 C 1.38907 * 120.00113 * 146.58040 * 14 13 4 17 17 N 1.31384 * 120.00002 * 339.06853 * 16 14 13 18 18 Si 1.86801 * 119.99982 * 159.06195 * 16 14 13 19 19 H 1.48500 * 109.47200 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46835 * 120.00401 * 18 16 14 21 21 H 1.48501 * 109.47378 * 240.00311 * 18 16 14 22 22 H 1.09001 * 109.46714 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47461 * 299.99972 * 1 2 3 24 24 H 1.08999 * 109.46736 * 60.00673 * 1 2 3 25 25 H 1.09001 * 109.47434 * 240.00006 * 2 1 3 26 26 H 1.09000 * 109.47214 * 119.99100 * 2 1 3 27 27 H 1.09000 * 109.47371 * 59.99329 * 3 2 1 28 28 H 1.09005 * 109.47275 * 299.99808 * 3 2 1 29 29 H 1.07999 * 120.08649 * 179.97438 * 8 7 6 30 30 H 1.08002 * 119.78229 * 179.97438 * 9 8 7 31 31 H 1.07996 * 119.74817 * 180.29776 * 10 9 8 32 32 H 1.08997 * 109.47669 * 269.73140 * 12 11 10 33 33 H 1.08995 * 109.47615 * 149.72439 * 12 11 10 34 34 H 1.09007 * 109.46568 * 29.72609 * 12 11 10 35 35 H 0.97003 * 119.99772 * 181.64425 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.2932 1.4421 -1.0650 6 6 5.6042 1.4418 -0.7072 7 6 5.6473 1.4428 0.6979 8 6 6.8692 1.4433 1.3533 9 6 8.0400 1.4433 0.6229 10 6 8.0032 1.4370 -0.7635 11 6 6.7983 1.4423 -1.4312 12 6 6.7688 1.4418 -2.9379 13 7 4.3292 1.4428 1.1197 14 6 3.8901 1.4439 2.4208 15 1 2.9780 1.9597 2.6824 16 6 4.6189 0.7815 3.4003 17 7 5.4656 -0.1645 3.0622 18 14 4.3953 1.2358 5.1984 19 1 3.3905 2.3233 5.3129 20 1 3.9258 0.0471 5.9546 21 1 5.6912 1.6978 5.7572 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8901 27 1 1.6766 1.9565 0.8899 28 1 1.6767 1.9564 -0.8900 29 1 6.9046 1.4445 2.4327 30 1 8.9913 1.4441 1.1342 31 1 8.9263 1.4322 -1.3240 32 1 6.7616 2.4693 -3.3015 33 1 5.8721 0.9277 -3.2836 34 1 7.6517 0.9280 -3.3183 35 1 5.9569 -0.6434 3.7479 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260144205.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:19 Heat of formation + Delta-G solvation = 43.378042 kcal Electronic energy + Delta-G solvation = -17579.553897 eV Core-core repulsion = 14963.066520 eV Total energy + Delta-G solvation = -2616.487377 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75786 -36.57301 -34.36771 -33.94304 -31.72307 -30.55007 -28.92216 -26.48244 -25.29834 -25.17687 -21.54409 -21.19771 -19.99489 -19.24440 -17.22193 -16.23388 -15.34481 -14.64641 -14.43622 -14.31989 -14.09362 -13.35201 -13.07513 -12.74599 -12.52053 -12.38973 -11.96138 -11.71930 -11.47154 -11.32671 -11.29240 -10.88918 -10.77558 -10.70528 -10.63777 -10.34227 -10.14461 -10.11940 -9.45766 -8.79708 -8.60587 -7.16600 -6.83344 -6.62670 -4.48760 2.14383 2.75206 2.98863 3.01374 3.05781 3.77316 4.03406 4.61218 4.69895 5.08053 5.24566 5.52692 5.56422 5.70560 5.86914 5.87888 6.03548 6.16470 6.20004 6.26679 6.27734 6.32997 6.39821 6.52914 6.61782 6.67533 6.82187 6.84114 6.89784 7.02679 7.13723 7.26741 7.61079 7.67333 7.90096 8.11824 8.21369 8.64951 9.26410 9.43911 10.21164 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.011843 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.202592 B = 2363.779015 C = 3973.259020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.020 4.020 4 C 0.213 3.787 5 N -0.528 5.528 6 C 0.032 3.968 7 C 0.047 3.953 8 C -0.048 4.048 9 C -0.155 4.155 10 C -0.147 4.147 11 C -0.061 4.061 12 C -0.095 4.095 13 N -0.286 5.286 14 C -0.359 4.359 15 H 0.108 0.892 16 C 0.055 3.945 17 N -0.819 5.819 18 Si 0.924 3.076 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.272 1.272 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 1.434 -1.909 3.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.059 4.059 4 C -0.049 4.049 5 N -0.251 5.251 6 C -0.092 4.092 7 C -0.068 4.068 8 C -0.069 4.069 9 C -0.176 4.176 10 C -0.168 4.168 11 C -0.063 4.063 12 C -0.152 4.152 13 N 0.044 4.956 14 C -0.487 4.487 15 H 0.126 0.874 16 C -0.158 4.158 17 N -0.448 5.448 18 Si 0.749 3.251 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.197 1.197 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.241 1.282 -2.471 3.574 hybrid contribution 0.366 -0.072 1.926 1.962 sum -1.875 1.210 -0.545 2.297 Atomic orbital electron populations 1.21751 0.96163 1.01134 1.01376 1.21415 0.94717 0.96433 1.02803 1.19800 0.86110 0.97606 1.02355 1.23184 0.94666 1.05019 0.82019 1.70115 1.00566 1.26495 1.27895 1.18665 0.91524 1.08262 0.90767 1.18651 0.86281 1.08350 0.93539 1.20011 0.89262 0.98432 0.99172 1.20534 0.96547 1.06822 0.93695 1.20359 0.95673 1.06670 0.94074 1.18731 0.90265 1.02865 0.94438 1.20518 1.01428 1.00940 0.92309 1.41163 1.02990 1.45766 1.05678 1.19630 1.12240 1.36018 0.80808 0.87402 1.25535 0.95482 0.93369 1.01402 1.70069 1.23025 1.15992 1.35720 0.85920 0.79192 0.79186 0.80851 1.18575 1.20030 1.19728 0.93104 0.92866 0.93023 0.91986 0.91354 0.90784 0.90491 0.86804 0.87555 0.87544 0.92557 0.91802 0.93000 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -2.03 5.92 -26.73 -0.16 -2.19 16 3 C -0.02 -0.38 5.49 -27.88 -0.15 -0.53 16 4 C 0.21 5.18 7.08 -154.38 -1.09 4.09 16 5 N -0.53 -13.37 11.27 -8.11 -0.09 -13.46 16 6 C 0.03 0.82 6.90 -84.66 -0.58 0.23 16 7 C 0.05 1.26 6.16 -83.86 -0.52 0.75 16 8 C -0.05 -1.20 8.57 -39.51 -0.34 -1.54 16 9 C -0.15 -3.34 10.03 -39.50 -0.40 -3.73 16 10 C -0.15 -3.02 9.67 -39.59 -0.38 -3.40 16 11 C -0.06 -1.36 5.91 -104.28 -0.62 -1.98 16 12 C -0.10 -1.73 10.02 36.00 0.36 -1.37 16 13 N -0.29 -7.52 2.86 -56.65 -0.16 -7.68 16 14 C -0.36 -9.11 9.48 -14.85 -0.14 -9.25 16 15 H 0.11 2.57 7.36 -52.49 -0.39 2.18 16 16 C 0.06 1.35 4.50 -17.50 -0.08 1.27 16 17 N -0.82 -21.28 10.66 55.49 0.59 -20.69 16 18 Si 0.92 18.58 29.60 -169.99 -5.03 13.54 16 19 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 27 H 0.07 1.35 7.38 -51.93 -0.38 0.97 16 28 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.11 2.87 6.26 -52.49 -0.33 2.54 16 30 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.21 8.09 -51.93 -0.42 0.79 16 34 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 293.96 15.07 4.43 4.43 Total: -1.00 -29.17 293.96 -8.87 -38.04 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.88 Total: 5.10 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -3.73 Total: -19.28 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.34 Total: -41.83 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.17 -8.87 -38.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260144205.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.418 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds