Wall clock time and date at job start Mon Mar 30 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46938 * 2 1 4 4 C 1.50702 * 109.47224 * 179.97438 * 3 2 1 5 5 N 1.30087 * 124.97616 * 89.97557 * 4 3 2 6 6 C 1.35902 * 109.73692 * 180.02562 * 5 4 3 7 7 C 1.40572 * 107.01764 * 359.97438 * 6 5 4 8 8 C 1.38666 * 119.96372 * 180.02562 * 7 6 5 9 9 C 1.37998 * 119.83012 * 0.02562 * 8 7 6 10 10 C 1.38687 * 120.43914 * 359.72292 * 9 8 7 11 11 C 1.37755 * 120.51154 * 0.55763 * 10 9 8 12 12 C 1.50699 * 120.11363 * 179.71761 * 11 10 9 13 13 N 1.36536 * 124.97478 * 269.99998 * 4 3 2 14 14 C 1.37314 * 126.39898 * 359.95543 * 13 4 3 15 15 H 1.08001 * 119.99618 * 326.58432 * 14 13 4 16 16 C 1.38907 * 120.00113 * 146.58040 * 14 13 4 17 17 N 1.31384 * 120.00002 * 339.06853 * 16 14 13 18 18 Si 1.86801 * 119.99982 * 159.06195 * 16 14 13 19 19 H 1.48500 * 109.47200 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46835 * 120.00401 * 18 16 14 21 21 H 1.48501 * 109.47378 * 240.00311 * 18 16 14 22 22 H 1.09001 * 109.46714 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47461 * 299.99972 * 1 2 3 24 24 H 1.08999 * 109.46736 * 60.00673 * 1 2 3 25 25 H 1.09001 * 109.47434 * 240.00006 * 2 1 3 26 26 H 1.09000 * 109.47214 * 119.99100 * 2 1 3 27 27 H 1.09000 * 109.47371 * 59.99329 * 3 2 1 28 28 H 1.09005 * 109.47275 * 299.99808 * 3 2 1 29 29 H 1.07999 * 120.08649 * 179.97438 * 8 7 6 30 30 H 1.08002 * 119.78229 * 179.97438 * 9 8 7 31 31 H 1.07996 * 119.74817 * 180.29776 * 10 9 8 32 32 H 1.08997 * 109.47669 * 269.73140 * 12 11 10 33 33 H 1.08995 * 109.47615 * 149.72439 * 12 11 10 34 34 H 1.09007 * 109.46568 * 29.72609 * 12 11 10 35 35 H 0.97003 * 119.99772 * 181.64425 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.2932 1.4421 -1.0650 6 6 5.6042 1.4418 -0.7072 7 6 5.6473 1.4428 0.6979 8 6 6.8692 1.4433 1.3533 9 6 8.0400 1.4433 0.6229 10 6 8.0032 1.4370 -0.7635 11 6 6.7983 1.4423 -1.4312 12 6 6.7688 1.4418 -2.9379 13 7 4.3292 1.4428 1.1197 14 6 3.8901 1.4439 2.4208 15 1 2.9780 1.9597 2.6824 16 6 4.6189 0.7815 3.4003 17 7 5.4656 -0.1645 3.0622 18 14 4.3953 1.2358 5.1984 19 1 3.3905 2.3233 5.3129 20 1 3.9258 0.0471 5.9546 21 1 5.6912 1.6978 5.7572 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8901 27 1 1.6766 1.9565 0.8899 28 1 1.6767 1.9564 -0.8900 29 1 6.9046 1.4445 2.4327 30 1 8.9913 1.4441 1.1342 31 1 8.9263 1.4322 -1.3240 32 1 6.7616 2.4693 -3.3015 33 1 5.8721 0.9277 -3.2836 34 1 7.6517 0.9280 -3.3183 35 1 5.9569 -0.6434 3.7479 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260144205.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:18 Heat of formation + Delta-G solvation = 28.695296 kcal Electronic energy + Delta-G solvation = -17580.190589 eV Core-core repulsion = 14963.066520 eV Total energy + Delta-G solvation = -2617.124069 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.58031 -38.28518 -36.10004 -35.50730 -33.48674 -32.34142 -30.51789 -28.05271 -27.06663 -26.88621 -23.03793 -22.96767 -21.68755 -21.04920 -19.05520 -17.99704 -17.17686 -16.36545 -16.08724 -15.88369 -15.73424 -15.00138 -14.58692 -14.26421 -14.23065 -13.93699 -13.58932 -13.20911 -13.09142 -12.92433 -12.82108 -12.40706 -12.27889 -12.25063 -12.18367 -12.03043 -11.77223 -11.57608 -11.27937 -10.65409 -10.48817 -8.99800 -8.66179 -8.43988 -6.41988 0.36164 1.00486 1.34005 1.37889 1.49980 2.07163 2.22007 2.81327 2.88169 3.27010 3.58637 4.09834 4.14926 4.22791 4.28641 4.38889 4.63465 4.65987 4.72807 4.77537 4.87544 4.92494 4.98368 5.02248 5.04322 5.12770 5.16165 5.26434 5.34221 5.40580 5.46984 5.50924 5.86424 5.88964 6.12022 6.26866 6.43495 6.77540 7.40338 7.56632 8.38382 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.011843 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.202592 B = 2363.779015 C = 3973.259020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C -0.017 4.017 4 C 0.198 3.802 5 N -0.544 5.544 6 C -0.002 4.002 7 C 0.013 3.987 8 C -0.081 4.081 9 C -0.144 4.144 10 C -0.141 4.141 11 C -0.074 4.074 12 C -0.088 4.088 13 N -0.306 5.306 14 C -0.384 4.384 15 H 0.115 0.885 16 C 0.016 3.984 17 N -0.855 5.855 18 Si 0.996 3.004 19 H -0.252 1.252 20 H -0.268 1.268 21 H -0.271 1.271 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.153 0.847 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.680 1.850 -2.225 3.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C -0.056 4.056 4 C -0.064 4.064 5 N -0.268 5.268 6 C -0.125 4.125 7 C -0.102 4.102 8 C -0.102 4.102 9 C -0.164 4.164 10 C -0.161 4.161 11 C -0.076 4.076 12 C -0.145 4.145 13 N 0.023 4.977 14 C -0.511 4.511 15 H 0.132 0.868 16 C -0.193 4.193 17 N -0.485 5.485 18 Si 0.817 3.183 19 H -0.175 1.175 20 H -0.193 1.193 21 H -0.196 1.196 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.158 0.842 31 H 0.170 0.830 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.937 1.700 -2.807 3.811 hybrid contribution 0.358 -0.210 1.927 1.971 sum -1.579 1.491 -0.879 2.343 Atomic orbital electron populations 1.21683 0.92492 1.02501 1.02741 1.21318 0.97757 0.94830 1.00601 1.19993 0.83214 0.98866 1.03532 1.24139 0.96612 1.04055 0.81616 1.70096 1.00877 1.27372 1.28410 1.19288 0.92677 1.09447 0.91053 1.19180 0.87037 1.09404 0.94562 1.20114 0.90133 1.01182 0.98783 1.20994 0.96753 1.04160 0.94522 1.20851 0.96837 1.04627 0.93833 1.19347 0.89718 1.01811 0.96710 1.20527 1.02319 1.02155 0.89483 1.41435 1.03363 1.46628 1.06306 1.20010 1.13126 1.36788 0.81213 0.86752 1.26474 0.94723 0.92633 1.05506 1.70168 1.24094 1.17092 1.37183 0.84863 0.79211 0.79158 0.75116 1.17522 1.19337 1.19591 0.91778 0.91952 0.91171 0.93250 0.94466 0.90092 0.88561 0.88335 0.84203 0.82984 0.91049 0.93252 0.89664 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.91 71.98 0.71 -2.78 16 2 C -0.11 -3.79 5.92 30.60 0.18 -3.60 16 3 C -0.02 -0.66 5.49 29.85 0.16 -0.50 16 4 C 0.20 9.93 7.08 137.77 0.98 10.91 16 5 N -0.54 -28.28 11.27 -179.56 -2.02 -30.31 16 6 C 0.00 -0.08 6.90 39.42 0.27 0.19 16 7 C 0.01 0.72 6.16 38.78 0.24 0.96 16 8 C -0.08 -4.13 8.57 22.31 0.19 -3.94 16 9 C -0.14 -6.00 10.03 22.32 0.22 -5.77 16 10 C -0.14 -5.44 9.67 22.26 0.22 -5.22 16 11 C -0.07 -3.21 5.91 -19.64 -0.12 -3.33 16 12 C -0.09 -3.02 10.02 71.24 0.71 -2.30 16 13 N -0.31 -16.74 2.86 -333.13 -0.95 -17.69 16 14 C -0.38 -20.13 9.48 83.99 0.80 -19.33 16 15 H 0.11 5.59 7.36 -2.91 -0.02 5.56 16 16 C 0.02 0.80 4.50 84.92 0.38 1.18 16 17 N -0.86 -45.92 10.66 21.65 0.23 -45.69 16 18 Si 1.00 38.50 29.60 68.60 2.03 40.53 16 19 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 20 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 21 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.08 2.98 7.38 -2.39 -0.02 2.96 16 28 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 29 H 0.10 5.17 6.26 -2.91 -0.02 5.15 16 30 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 31 H 0.15 4.44 8.06 -2.91 -0.02 4.41 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.05 1.82 8.09 -2.39 -0.02 1.80 16 34 H 0.08 2.32 8.08 -2.38 -0.02 2.30 16 35 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -66.01 293.96 5.31 -60.70 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 1.07 Total: 25.98 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 4.95 Total: -33.53 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -2.75 Total: -93.68 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -66.01 5.31 -60.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260144205.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.395 kcal (2) G-P(sol) polarization free energy of solvation -66.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds