Wall clock time and date at job start Mon Mar 30 2020 05:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37975 * 120.07662 * 2 1 4 4 C 1.38335 * 120.14854 * 179.72616 * 3 2 1 5 5 C 1.50700 * 119.84757 * 180.25595 * 4 3 2 6 6 C 1.38383 * 120.30788 * 0.50472 * 4 3 2 7 7 C 1.50699 * 119.92582 * 179.76889 * 6 4 3 8 8 H 1.09004 * 109.46963 * 324.72363 * 7 6 4 9 9 N 1.46905 * 109.47256 * 204.72919 * 7 6 4 10 10 C 1.52997 * 109.47337 * 84.72672 * 7 6 4 11 11 C 1.50701 * 109.47212 * 184.99952 * 10 7 6 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 7 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 7 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.37925 * 120.14871 * 359.49559 * 6 4 3 20 20 C 1.39614 * 120.07931 * 179.97438 * 2 1 3 21 21 C 1.43203 * 120.14698 * 0.04379 * 20 2 1 22 22 N 3.48495 * 80.49472 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.47109 * 270.02527 * 1 2 3 24 24 H 1.09000 * 109.47014 * 30.02621 * 1 2 3 25 25 H 1.08997 * 109.46948 * 150.02387 * 1 2 3 26 26 H 1.07997 * 119.92024 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.47298 * 270.25502 * 5 4 3 28 28 H 1.09003 * 109.46904 * 30.24985 * 5 4 3 29 29 H 1.09001 * 109.47389 * 150.25131 * 5 4 3 30 30 H 1.00898 * 110.99705 * 300.00162 * 9 7 6 31 31 H 1.00897 * 110.99904 * 63.95071 * 9 7 6 32 32 H 1.09002 * 109.47153 * 64.99954 * 10 7 6 33 33 H 1.09001 * 109.46832 * 305.00144 * 10 7 6 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.08009 * 120.07635 * 180.27094 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5819 1.1957 0.0057 5 6 4.3302 2.5038 0.0115 6 6 4.2817 0.0019 0.0009 7 6 5.7887 0.0139 0.0020 8 1 6.1457 0.8584 -0.5876 9 7 6.2887 -1.2376 -0.5826 10 6 6.2967 0.1442 1.4392 11 6 7.7976 0.2797 1.4312 12 1 8.3353 0.2738 0.4946 13 6 8.4842 0.4121 2.6195 14 7 7.8294 0.4197 3.7599 15 14 10.3445 0.5807 2.6094 16 1 10.7279 1.7898 1.8370 17 1 10.8376 0.7071 4.0045 18 1 10.9472 -0.6212 1.9789 19 6 3.6032 -1.1989 0.0009 20 6 2.2068 -1.2081 0.0005 21 6 1.4957 -2.4511 0.0001 22 7 0.9315 -3.4371 -0.0015 23 1 -0.3633 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6585 2.1292 -0.0004 27 1 4.5109 2.8236 -1.0148 28 1 3.7379 3.2589 0.5284 29 1 5.2830 2.3750 0.5251 30 1 5.9712 -2.0360 -0.0536 31 1 6.0206 -1.3164 -1.5521 32 1 6.0150 -0.7432 2.0061 33 1 5.8547 1.0265 1.9022 34 1 8.3125 0.5125 4.5960 35 1 4.1506 -2.1299 0.0016 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260155336.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:48 Heat of formation + Delta-G solvation = 16.749466 kcal Electronic energy + Delta-G solvation = -16879.082755 eV Core-core repulsion = 14261.440677 eV Total energy + Delta-G solvation = -2617.642079 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.10666 -38.07264 -36.90143 -34.66208 -34.04462 -32.54828 -30.20953 -28.46926 -28.21427 -25.77460 -23.73649 -22.52862 -21.48745 -19.12060 -18.16938 -17.37832 -16.67201 -16.25939 -16.04431 -15.48564 -15.34653 -14.89111 -14.42894 -14.36437 -14.10639 -13.94996 -13.88273 -13.85751 -13.29096 -13.17655 -12.87349 -12.78316 -12.64522 -12.29753 -12.27043 -11.99852 -11.93984 -11.39111 -11.14123 -10.45948 -9.76392 -9.46387 -9.31509 -8.07572 -6.12994 -0.21933 0.36156 1.45904 1.48280 1.54606 1.55539 1.88159 2.50202 2.79906 2.85571 3.26298 3.73926 3.79790 3.91893 3.94866 4.22913 4.35693 4.58138 4.63546 4.72027 4.75075 4.75783 4.90538 4.92725 5.07179 5.18137 5.28802 5.32097 5.42947 5.56337 5.65042 5.76743 5.91042 5.93068 6.34502 6.38056 6.54480 6.83296 7.01651 7.53590 9.03721 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030169 B = 0.005622 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.872380 B = 4978.982399 C = 5357.866923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.036 4.036 3 C -0.117 4.117 4 C -0.043 4.043 5 C -0.128 4.128 6 C -0.127 4.127 7 C 0.148 3.852 8 H 0.084 0.916 9 N -0.834 5.834 10 C 0.046 3.954 11 C -0.504 4.504 12 H 0.061 0.939 13 C -0.003 4.003 14 N -0.939 5.939 15 Si 0.955 3.045 16 H -0.267 1.267 17 H -0.290 1.290 18 H -0.274 1.274 19 C -0.073 4.073 20 C -0.056 4.056 21 C 0.282 3.718 22 N -0.462 5.462 23 H 0.084 0.916 24 H 0.102 0.898 25 H 0.056 0.944 26 H 0.165 0.835 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.336 0.664 31 H 0.342 0.658 32 H -0.016 1.016 33 H 0.005 0.995 34 H 0.258 0.742 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.387 4.325 -9.667 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.039 4.039 3 C -0.134 4.134 4 C -0.044 4.044 5 C -0.184 4.184 6 C -0.130 4.130 7 C 0.036 3.964 8 H 0.102 0.898 9 N -0.364 5.364 10 C 0.008 3.992 11 C -0.542 4.542 12 H 0.079 0.921 13 C -0.199 4.199 14 N -0.581 5.581 15 Si 0.781 3.219 16 H -0.192 1.192 17 H -0.216 1.216 18 H -0.200 1.200 19 C -0.093 4.093 20 C -0.060 4.060 21 C -0.032 4.032 22 N -0.138 5.138 23 H 0.102 0.898 24 H 0.120 0.880 25 H 0.075 0.925 26 H 0.182 0.818 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.002 0.998 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.481 3.079 -9.339 15.890 hybrid contribution 0.402 -0.225 0.438 0.636 sum -12.079 2.853 -8.901 15.273 Atomic orbital electron populations 1.20935 0.88770 1.04045 1.03671 1.20133 0.97228 0.90858 0.95685 1.21138 0.92617 0.98379 1.01311 1.20286 0.94397 0.95335 0.94426 1.21026 1.00437 0.93321 1.03638 1.20930 0.98218 0.93018 1.00803 1.20385 0.85775 0.93103 0.97160 0.89780 1.58709 1.67540 1.03770 1.06344 1.18953 0.94973 0.94841 0.90400 1.21484 0.93255 1.47079 0.92380 0.92084 1.25833 1.02745 0.95870 0.95488 1.70088 1.37176 1.52865 0.97924 0.85647 0.80691 0.78895 0.76620 1.19163 1.21585 1.19987 1.20948 0.92121 0.98516 0.97749 1.15873 0.91754 0.86701 1.11664 1.25798 0.92418 0.92594 0.92359 1.81218 1.10090 1.11602 1.10940 0.89769 0.87973 0.92452 0.81764 0.88939 0.89382 0.92315 0.85021 0.84462 0.99812 0.97687 0.93297 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 9.61 71.24 0.68 -1.16 16 2 C -0.04 -0.78 5.91 -19.59 -0.12 -0.90 16 3 C -0.12 -2.41 9.34 22.23 0.21 -2.20 16 4 C -0.04 -1.13 5.89 -19.81 -0.12 -1.24 16 5 C -0.13 -3.10 9.20 71.24 0.66 -2.44 16 6 C -0.13 -3.93 5.04 -19.90 -0.10 -4.03 16 7 C 0.15 5.45 2.23 44.17 0.10 5.54 16 8 H 0.08 3.08 6.99 -2.39 -0.02 3.06 16 9 N -0.83 -28.61 8.54 -171.79 -1.47 -30.08 16 10 C 0.05 2.24 4.35 29.85 0.13 2.37 16 11 C -0.50 -27.47 8.84 25.60 0.23 -27.25 16 12 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 13 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 14 N -0.94 -56.38 13.29 21.45 0.28 -56.09 16 15 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 19 C -0.07 -2.09 8.97 22.54 0.20 -1.89 16 20 C -0.06 -1.47 5.73 -21.36 -0.12 -1.60 16 21 C 0.28 7.92 13.80 88.33 1.22 9.14 16 22 N -0.46 -14.44 18.54 19.00 0.35 -14.09 16 23 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.10 1.06 8.09 -2.39 -0.02 1.04 16 25 H 0.06 0.99 7.09 -2.39 -0.02 0.98 16 26 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 1.72 8.08 -2.39 -0.02 1.70 16 29 H 0.06 1.85 5.44 -2.39 -0.01 1.84 16 30 H 0.34 11.33 7.20 -89.70 -0.65 10.68 16 31 H 0.34 9.50 9.06 -89.70 -0.81 8.69 16 32 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H 0.00 0.26 6.99 -2.39 -0.02 0.24 16 34 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 35 H 0.13 3.56 6.28 -2.91 -0.02 3.54 16 Total: -1.00 -65.68 299.36 4.29 -61.39 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -0.33 Total: 17.86 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 3.43 Total: -25.36 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -0.83 Total: -100.26 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -65.68 4.29 -61.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260155336.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.135 kcal (2) G-P(sol) polarization free energy of solvation -65.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds