Wall clock time and date at job start Mon Mar 30 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47138 * 2 1 4 4 N 1.30110 * 124.95422 * 89.97239 * 3 2 1 5 5 C 1.35787 * 109.64483 * 180.02562 * 4 3 2 6 6 C 1.39735 * 133.60090 * 179.97438 * 5 4 3 7 7 C 1.36603 * 119.88474 * 179.72469 * 6 5 4 8 8 C 1.38783 * 120.66827 * 0.28758 * 7 6 5 9 9 C 1.50702 * 119.77051 * 179.97438 * 8 7 6 10 10 C 1.37848 * 120.45026 * 0.02562 * 8 7 6 11 11 C 1.38833 * 119.69197 * 359.97438 * 10 8 7 12 12 N 1.36053 * 124.94625 * 270.67793 * 3 2 1 13 13 C 1.46503 * 126.34878 * 359.34464 * 12 3 2 14 14 C 1.50703 * 109.47017 * 270.83358 * 13 12 3 15 15 H 1.07998 * 120.00218 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99812 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00029 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99738 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47391 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47336 * 120.00080 * 18 16 14 21 21 H 1.48502 * 109.46766 * 240.00010 * 18 16 14 22 22 H 1.09004 * 109.47004 * 60.00457 * 1 2 3 23 23 H 1.08996 * 109.47679 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47760 * 300.00999 * 1 2 3 25 25 H 1.08995 * 109.47320 * 239.99161 * 2 1 3 26 26 H 1.09000 * 109.46565 * 119.99386 * 2 1 3 27 27 H 1.08002 * 120.06112 * 0.02562 * 6 5 4 28 28 H 1.07994 * 119.66831 * 180.30197 * 7 6 5 29 29 H 1.08997 * 109.47434 * 89.99688 * 9 8 7 30 30 H 1.09005 * 109.46735 * 209.99536 * 9 8 7 31 31 H 1.09001 * 109.47297 * 329.99133 * 9 8 7 32 32 H 1.08002 * 120.15281 * 179.97438 * 10 8 7 33 33 H 1.09001 * 109.46744 * 30.83013 * 13 12 3 34 34 H 1.08990 * 109.47254 * 150.83380 * 13 12 3 35 35 H 0.96997 * 119.99786 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2803 2.1237 1.0664 5 6 2.7165 3.3587 0.7079 6 6 3.1144 4.4872 1.4294 7 6 3.5178 5.6115 0.7667 8 6 3.5317 5.6488 -0.6206 9 6 3.9800 6.9000 -1.3311 10 6 3.1373 4.5496 -1.3530 11 6 2.7242 3.3981 -0.6966 12 7 2.2796 2.1599 -1.1151 13 6 2.1203 1.7180 -2.5028 14 6 3.4031 1.0870 -2.9795 15 1 4.2521 1.0213 -2.3151 16 6 3.4927 0.5926 -4.2634 17 7 2.4588 0.6721 -5.0723 18 14 5.0826 -0.1903 -4.8540 19 1 6.0870 -0.1562 -3.7609 20 1 4.8248 -1.5991 -5.2463 21 1 5.6000 0.5628 -6.0247 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5140 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 3.1076 4.4690 2.5093 28 1 3.8292 6.4800 1.3278 29 1 5.0555 6.8553 -1.5019 30 1 3.4631 6.9796 -2.2875 31 1 3.7453 7.7700 -0.7177 32 1 3.1496 4.5840 -2.4324 33 1 1.3128 0.9882 -2.5612 34 1 1.8814 2.5753 -3.1320 35 1 2.5217 0.3240 -5.9754 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260179372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:01 Heat of formation + Delta-G solvation = 30.021630 kcal Electronic energy + Delta-G solvation = -17270.415141 eV Core-core repulsion = 14653.348587 eV Total energy + Delta-G solvation = -2617.066554 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.99856 -38.76526 -36.02841 -34.52711 -34.23308 -32.09991 -30.91265 -29.07984 -27.21238 -25.32580 -24.95656 -22.64713 -22.23221 -20.53611 -18.89870 -18.06394 -17.69082 -16.49452 -16.41949 -15.94198 -15.31587 -14.98175 -14.80037 -14.58051 -14.47310 -14.13509 -13.73612 -13.41047 -13.19327 -12.94727 -12.82421 -12.72539 -12.49856 -12.39316 -12.16889 -12.11567 -11.96570 -11.67925 -11.05756 -10.93106 -10.74834 -9.12186 -8.83310 -8.38454 -6.57296 0.08063 0.68982 1.32755 1.34939 1.46906 1.85450 2.01853 2.30736 2.91110 2.95541 3.26096 3.64397 4.06303 4.13109 4.15208 4.32254 4.35610 4.43106 4.50665 4.69983 4.73328 4.80909 4.85138 4.91558 4.95245 4.99168 5.07487 5.24375 5.27050 5.35343 5.47830 5.66951 5.71344 5.74608 5.80560 6.09125 6.29132 6.57850 7.02423 7.15409 8.67499 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017317 B = 0.008696 C = 0.006426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.512465 B = 3219.241592 C = 4356.556464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.045 4.045 3 C 0.272 3.728 4 N -0.530 5.530 5 C 0.006 3.994 6 C -0.077 4.077 7 C -0.122 4.122 8 C -0.079 4.079 9 C -0.103 4.103 10 C -0.127 4.127 11 C 0.022 3.978 12 N -0.473 5.473 13 C 0.257 3.743 14 C -0.556 4.556 15 H 0.047 0.953 16 C 0.027 3.973 17 N -0.914 5.914 18 Si 0.967 3.033 19 H -0.275 1.275 20 H -0.267 1.267 21 H -0.272 1.272 22 H 0.037 0.963 23 H 0.094 0.906 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.144 0.856 28 H 0.166 0.834 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.044 0.956 34 H 0.022 0.978 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.218 6.134 7.735 9.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.084 4.084 3 C 0.007 3.993 4 N -0.252 5.252 5 C -0.113 4.113 6 C -0.097 4.097 7 C -0.142 4.142 8 C -0.080 4.080 9 C -0.160 4.160 10 C -0.148 4.148 11 C -0.089 4.089 12 N -0.159 5.159 13 C 0.138 3.862 14 C -0.594 4.594 15 H 0.065 0.935 16 C -0.174 4.174 17 N -0.552 5.552 18 Si 0.791 3.209 19 H -0.200 1.200 20 H -0.192 1.192 21 H -0.198 1.198 22 H 0.057 0.943 23 H 0.113 0.887 24 H 0.080 0.920 25 H 0.099 0.901 26 H 0.128 0.872 27 H 0.161 0.839 28 H 0.184 0.816 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.015 5.773 8.204 10.031 hybrid contribution 0.666 -0.411 -1.664 1.839 sum 0.681 5.361 6.540 8.484 Atomic orbital electron populations 1.21643 0.92274 1.03735 1.01466 1.20240 0.97749 0.85659 1.04796 1.24108 0.97565 0.96851 0.80750 1.70300 1.23083 1.03880 1.27921 1.19620 1.06234 0.94713 0.90719 1.20235 0.99159 0.90049 1.00211 1.20851 1.01519 0.98579 0.93226 1.20002 0.98559 0.95242 0.94246 1.20781 1.01758 0.93297 1.00126 1.20058 1.04040 0.91474 0.99215 1.19406 1.04859 0.88912 0.95755 1.45920 1.50746 1.10203 1.09023 1.19256 0.97845 0.95260 0.73888 1.21410 0.98212 1.40954 0.98820 0.93514 1.25690 1.00283 0.95530 0.95929 1.70000 1.31486 1.45735 1.07945 0.85363 0.78675 0.78665 0.78164 1.19975 1.19164 1.19758 0.94350 0.88688 0.92043 0.90102 0.87203 0.83871 0.81611 0.90316 0.91873 0.88796 0.87466 0.93793 0.95957 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 9.89 71.98 0.71 -3.23 16 2 C -0.05 -1.61 6.00 29.85 0.18 -1.43 16 3 C 0.27 11.98 7.11 137.92 0.98 12.96 16 4 N -0.53 -23.50 11.27 -179.96 -2.03 -25.53 16 5 C 0.01 0.28 7.23 39.45 0.29 0.56 16 6 C -0.08 -2.60 10.05 22.25 0.22 -2.37 16 7 C -0.12 -3.43 9.61 22.02 0.21 -3.22 16 8 C -0.08 -2.45 5.88 -19.83 -0.12 -2.57 16 9 C -0.10 -2.28 10.00 71.24 0.71 -1.56 16 10 C -0.13 -5.15 9.69 22.32 0.22 -4.94 16 11 C 0.02 0.99 6.87 38.86 0.27 1.26 16 12 N -0.47 -22.81 2.79 -509.63 -1.42 -24.23 16 13 C 0.26 13.37 5.48 85.63 0.47 13.84 16 14 C -0.56 -30.68 9.39 25.60 0.24 -30.44 16 15 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 16 C 0.03 1.47 5.46 84.66 0.46 1.93 16 17 N -0.91 -50.63 13.29 21.45 0.28 -50.34 16 18 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 22 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 23 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.08 3.06 7.67 -2.39 -0.02 3.04 16 26 H 0.11 3.35 8.14 -2.39 -0.02 3.34 16 27 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 28 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.41 8.08 -2.38 -0.02 1.39 16 31 H 0.09 1.52 8.08 -2.39 -0.02 1.50 16 32 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.04 2.30 7.65 -2.39 -0.02 2.29 16 34 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -65.22 301.50 4.77 -60.45 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 1.07 Total: 14.40 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 4.84 Total: -19.20 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -3.17 Total: -100.10 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -65.22 4.77 -60.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260179372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.471 kcal (2) G-P(sol) polarization free energy of solvation -65.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds