Wall clock time and date at job start Mon Mar 30 2020 05:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37784 * 120.11175 * 2 1 4 4 C 1.38786 * 120.66675 * 180.25858 * 3 2 1 5 5 C 1.50706 * 119.73471 * 179.75984 * 4 3 2 6 6 H 1.09000 * 109.47318 * 339.71515 * 5 4 3 7 7 N 1.46902 * 109.46577 * 219.72008 * 5 4 3 8 8 C 1.52997 * 109.47238 * 99.72306 * 5 4 3 9 9 C 1.50701 * 109.47011 * 184.99962 * 8 5 4 10 10 H 1.07998 * 119.99790 * 359.97438 * 9 8 5 11 11 C 1.37881 * 119.99722 * 179.97438 * 9 8 5 12 12 N 1.31507 * 120.00324 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99653 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46784 * 90.00232 * 13 11 9 15 15 H 1.48497 * 109.46878 * 209.99666 * 13 11 9 16 16 H 1.48499 * 109.47363 * 330.00465 * 13 11 9 17 17 C 1.36664 * 120.52746 * 359.47756 * 4 3 2 18 18 C 1.39585 * 119.76134 * 0.25692 * 17 4 3 19 19 C 1.46492 * 134.03314 * 180.02562 * 18 17 4 20 20 C 1.34235 * 107.00034 * 180.02562 * 19 18 17 21 21 N 1.36833 * 109.93807 * 359.97438 * 20 19 18 22 22 H 0.96998 * 125.06316 * 179.97438 * 21 20 19 23 23 C 1.37691 * 109.87302 * 0.02562 * 21 20 19 24 24 H 1.08999 * 109.47287 * 270.26003 * 1 2 3 25 25 H 1.09000 * 109.47022 * 30.26256 * 1 2 3 26 26 H 1.08998 * 109.46668 * 150.25913 * 1 2 3 27 27 H 1.08005 * 119.66926 * 359.97438 * 3 2 1 28 28 H 1.00906 * 110.99720 * 176.04443 * 7 5 4 29 29 H 1.00896 * 111.00210 * 300.00030 * 7 5 4 30 30 H 1.09002 * 109.47196 * 304.99679 * 8 5 4 31 31 H 1.09001 * 109.47630 * 64.99774 * 8 5 4 32 32 H 0.96996 * 120.00294 * 179.97438 * 12 11 9 33 33 H 1.08003 * 120.11557 * 180.28098 * 17 4 3 34 34 H 1.07998 * 126.50169 * 359.96627 * 19 18 17 35 35 H 1.08000 * 125.03186 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2054 -0.0054 5 6 4.3209 2.5212 -0.0108 6 1 3.6551 3.3077 -0.3660 7 7 5.4863 2.4275 -0.9002 8 6 4.7877 2.8504 1.4086 9 6 5.4137 4.2211 1.4261 10 1 5.4731 4.7994 0.5159 11 6 5.9107 4.7370 2.6043 12 7 5.8380 4.0331 3.7127 13 14 6.6873 6.4358 2.6259 14 1 5.6438 7.4535 2.9102 15 1 7.7313 6.4893 3.6806 16 1 7.3040 6.7150 1.3042 17 6 4.2917 0.0350 -0.0001 18 6 3.6117 -1.1840 0.0055 19 6 4.0354 -2.5863 0.0123 20 6 2.9201 -3.3333 0.0148 21 7 1.8166 -2.5242 0.0107 22 1 0.8977 -2.8350 0.0111 23 6 2.2048 -1.2032 0.0048 24 1 -0.3634 0.0047 1.0276 25 1 -0.3633 0.8876 -0.5179 26 1 -0.3632 -0.8923 -0.5098 27 1 1.6547 2.1252 -0.0004 28 1 5.9591 3.3160 -0.9714 29 1 6.1192 1.7047 -0.5920 30 1 3.9335 2.8325 2.0854 31 1 5.5217 2.1116 1.7303 32 1 6.1879 4.3958 4.5415 33 1 5.3716 0.0532 0.0003 34 1 5.0522 -2.9502 0.0139 35 1 2.8971 -4.4131 0.0202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260182371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:20 Heat of formation + Delta-G solvation = 39.231910 kcal Electronic energy + Delta-G solvation = -16903.764092 eV Core-core repulsion = 14287.096925 eV Total energy + Delta-G solvation = -2616.667167 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.95972 -37.57353 -34.91548 -32.83989 -32.05154 -29.48470 -28.73913 -27.78649 -26.42470 -24.32508 -21.88831 -21.45544 -20.12301 -19.25483 -17.59644 -16.54148 -15.78052 -14.85943 -14.62047 -14.58832 -14.36357 -13.43194 -13.07132 -13.03659 -12.97671 -12.63897 -12.50937 -12.23527 -12.03325 -11.83795 -11.22602 -11.07833 -10.73751 -10.56256 -10.44776 -10.12192 -9.77861 -9.25046 -9.09180 -8.41753 -7.88791 -7.54568 -7.19641 -6.02769 -4.07147 1.50566 2.09958 2.96039 3.30108 3.34155 3.36808 3.39448 4.32108 4.43881 4.97912 5.02731 5.18827 5.30603 5.33909 5.52749 5.64259 5.70058 5.77555 5.90557 5.93110 5.98998 6.22462 6.29891 6.41546 6.61692 6.83128 6.87530 7.02130 7.09687 7.30417 7.53259 7.58963 7.69271 7.74001 7.92531 8.16604 8.29575 8.42602 9.00139 9.57599 11.07806 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.005231 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.339204 B = 5351.412928 C = 5575.589520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.107 4.107 3 C -0.089 4.089 4 C -0.070 4.070 5 C 0.129 3.871 6 H 0.073 0.927 7 N -0.840 5.840 8 C 0.001 3.999 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.059 3.941 12 N -0.891 5.891 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.066 4.066 18 C -0.105 4.105 19 C -0.203 4.203 20 C 0.037 3.963 21 N -0.600 5.600 22 H 0.409 0.591 23 C 0.086 3.914 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.123 0.877 28 H 0.344 0.656 29 H 0.328 0.672 30 H 0.019 0.981 31 H 0.017 0.983 32 H 0.261 0.739 33 H 0.118 0.882 34 H 0.142 0.858 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 -12.439 -7.248 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.110 4.110 3 C -0.109 4.109 4 C -0.071 4.071 5 C 0.018 3.982 6 H 0.092 0.908 7 N -0.369 5.369 8 C -0.038 4.038 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.085 4.085 18 C -0.109 4.109 19 C -0.229 4.229 20 C -0.089 4.089 21 N -0.204 5.204 22 H 0.245 0.755 23 C -0.020 4.020 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.140 0.860 28 H 0.157 0.843 29 H 0.140 0.860 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.136 0.864 34 H 0.160 0.840 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.673 -12.675 -7.637 17.152 hybrid contribution 0.618 0.968 1.168 1.638 sum -8.056 -11.706 -6.468 15.613 Atomic orbital electron populations 1.20628 0.91846 1.01968 1.01757 1.18722 0.94846 0.90196 1.07189 1.20616 0.93703 0.96243 1.00312 1.19586 0.93116 0.95514 0.98907 1.20470 0.91713 0.91542 0.94473 0.90848 1.59275 1.12169 1.11555 1.53867 1.19802 0.96691 0.96519 0.90780 1.21188 1.38905 1.01502 0.94660 0.92535 1.25018 0.96018 0.97504 0.95687 1.69974 1.46248 1.37380 0.99418 0.86603 0.79068 0.84604 0.77773 1.20679 1.21295 1.19795 1.19989 0.99355 0.89807 0.99309 1.19176 0.91924 0.93535 1.06308 1.21679 0.97945 0.91121 1.12128 1.21661 0.85781 0.95979 1.05437 1.41651 1.08048 1.04246 1.66427 0.75533 1.17986 0.93819 0.84248 1.05904 0.91717 0.91359 0.92998 0.85951 0.84256 0.86006 0.96258 0.96458 0.92966 0.86414 0.84029 0.81883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.02 36.01 0.36 -0.87 16 2 C -0.11 -1.67 5.89 -104.47 -0.62 -2.29 16 3 C -0.09 -1.58 9.29 -39.54 -0.37 -1.94 16 4 C -0.07 -1.36 4.93 -104.99 -0.52 -1.88 16 5 C 0.13 2.74 2.98 -68.86 -0.21 2.54 16 6 H 0.07 1.57 7.99 -51.93 -0.41 1.16 16 7 N -0.84 -16.40 9.01 -5.65 -0.05 -16.45 16 8 C 0.00 0.01 4.59 -27.88 -0.13 -0.11 16 9 C -0.52 -14.39 8.55 -34.44 -0.29 -14.69 16 10 H 0.06 1.49 7.14 -52.49 -0.38 1.12 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 13 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 C -0.07 -1.23 9.28 -39.65 -0.37 -1.60 16 18 C -0.11 -1.82 6.37 -105.14 -0.67 -2.49 16 19 C -0.20 -2.87 11.08 -37.67 -0.42 -3.28 16 20 C 0.04 0.42 11.81 -16.73 -0.20 0.23 16 21 N -0.60 -7.25 6.07 -10.65 -0.06 -7.31 16 22 H 0.41 3.58 8.87 -40.82 -0.36 3.22 16 23 C 0.09 1.36 6.95 -83.99 -0.58 0.78 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 26 H 0.05 0.51 7.99 -51.93 -0.42 0.09 16 27 H 0.12 1.99 8.02 -52.48 -0.42 1.57 16 28 H 0.34 6.79 7.90 -39.29 -0.31 6.48 16 29 H 0.33 6.17 7.31 -39.29 -0.29 5.88 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.12 2.15 6.62 -52.48 -0.35 1.80 16 34 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 295.22 15.07 4.45 4.45 Total: -1.00 -31.84 295.22 -8.65 -40.49 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -4.60 Total: 12.45 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -4.10 Total: -24.03 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.62 Total: -49.77 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.84 -8.65 -40.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260182371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.722 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds