Wall clock time and date at job start Mon Mar 30 2020 05:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37784 * 120.11175 * 2 1 4 4 C 1.38786 * 120.66675 * 180.25858 * 3 2 1 5 5 C 1.50706 * 119.73471 * 179.75984 * 4 3 2 6 6 H 1.09000 * 109.47318 * 339.71515 * 5 4 3 7 7 N 1.46902 * 109.46577 * 219.72008 * 5 4 3 8 8 C 1.52997 * 109.47238 * 99.72306 * 5 4 3 9 9 C 1.50701 * 109.47011 * 184.99962 * 8 5 4 10 10 H 1.07998 * 119.99790 * 359.97438 * 9 8 5 11 11 C 1.37881 * 119.99722 * 179.97438 * 9 8 5 12 12 N 1.31507 * 120.00324 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99653 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46784 * 90.00232 * 13 11 9 15 15 H 1.48497 * 109.46878 * 209.99666 * 13 11 9 16 16 H 1.48499 * 109.47363 * 330.00465 * 13 11 9 17 17 C 1.36664 * 120.52746 * 359.47756 * 4 3 2 18 18 C 1.39585 * 119.76134 * 0.25692 * 17 4 3 19 19 C 1.46492 * 134.03314 * 180.02562 * 18 17 4 20 20 C 1.34235 * 107.00034 * 180.02562 * 19 18 17 21 21 N 1.36833 * 109.93807 * 359.97438 * 20 19 18 22 22 H 0.96998 * 125.06316 * 179.97438 * 21 20 19 23 23 C 1.37691 * 109.87302 * 0.02562 * 21 20 19 24 24 H 1.08999 * 109.47287 * 270.26003 * 1 2 3 25 25 H 1.09000 * 109.47022 * 30.26256 * 1 2 3 26 26 H 1.08998 * 109.46668 * 150.25913 * 1 2 3 27 27 H 1.08005 * 119.66926 * 359.97438 * 3 2 1 28 28 H 1.00906 * 110.99720 * 176.04443 * 7 5 4 29 29 H 1.00896 * 111.00210 * 300.00030 * 7 5 4 30 30 H 1.09002 * 109.47196 * 304.99679 * 8 5 4 31 31 H 1.09001 * 109.47630 * 64.99774 * 8 5 4 32 32 H 0.96996 * 120.00294 * 179.97438 * 12 11 9 33 33 H 1.08003 * 120.11557 * 180.28098 * 17 4 3 34 34 H 1.07998 * 126.50169 * 359.96627 * 19 18 17 35 35 H 1.08000 * 125.03186 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2054 -0.0054 5 6 4.3209 2.5212 -0.0108 6 1 3.6551 3.3077 -0.3660 7 7 5.4863 2.4275 -0.9002 8 6 4.7877 2.8504 1.4086 9 6 5.4137 4.2211 1.4261 10 1 5.4731 4.7994 0.5159 11 6 5.9107 4.7370 2.6043 12 7 5.8380 4.0331 3.7127 13 14 6.6873 6.4358 2.6259 14 1 5.6438 7.4535 2.9102 15 1 7.7313 6.4893 3.6806 16 1 7.3040 6.7150 1.3042 17 6 4.2917 0.0350 -0.0001 18 6 3.6117 -1.1840 0.0055 19 6 4.0354 -2.5863 0.0123 20 6 2.9201 -3.3333 0.0148 21 7 1.8166 -2.5242 0.0107 22 1 0.8977 -2.8350 0.0111 23 6 2.2048 -1.2032 0.0048 24 1 -0.3634 0.0047 1.0276 25 1 -0.3633 0.8876 -0.5179 26 1 -0.3632 -0.8923 -0.5098 27 1 1.6547 2.1252 -0.0004 28 1 5.9591 3.3160 -0.9714 29 1 6.1192 1.7047 -0.5920 30 1 3.9335 2.8325 2.0854 31 1 5.5217 2.1116 1.7303 32 1 6.1879 4.3958 4.5415 33 1 5.3716 0.0532 0.0003 34 1 5.0522 -2.9502 0.0139 35 1 2.8971 -4.4131 0.0202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260182371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:19 Heat of formation + Delta-G solvation = 18.238357 kcal Electronic energy + Delta-G solvation = -16904.674440 eV Core-core repulsion = 14287.096925 eV Total energy + Delta-G solvation = -2617.577515 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.10455 -38.98779 -36.46285 -34.61902 -33.57733 -30.69991 -30.06683 -29.63493 -27.57721 -26.16866 -23.53414 -22.70099 -21.18726 -20.78916 -18.89852 -18.50255 -17.04660 -16.60154 -16.43184 -15.95602 -15.50644 -14.80373 -14.55574 -14.36047 -14.12503 -14.05836 -13.91373 -13.87926 -13.39955 -13.17085 -12.91062 -12.79352 -12.37530 -12.24953 -12.00483 -11.76605 -11.57152 -11.13971 -10.61223 -10.39656 -9.46441 -8.92198 -8.43321 -8.20019 -6.33714 0.28107 0.75615 1.39992 1.40891 1.52144 1.90140 2.35128 2.39458 2.99205 3.11789 3.83828 3.87405 4.03420 4.18226 4.32038 4.45427 4.47673 4.55985 4.70131 4.79957 4.90244 4.91938 4.95621 5.03135 5.23347 5.34743 5.37514 5.51532 5.61660 5.76077 5.83097 5.89413 5.94722 6.16379 6.32745 6.42857 6.73989 6.83071 6.83624 7.36250 8.90489 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.005231 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.339204 B = 5351.412928 C = 5575.589520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.097 4.097 3 C -0.118 4.118 4 C -0.093 4.093 5 C 0.144 3.856 6 H 0.069 0.931 7 N -0.828 5.828 8 C 0.014 3.986 9 C -0.536 4.536 10 H 0.066 0.934 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.259 1.259 17 C -0.089 4.089 18 C -0.130 4.130 19 C -0.241 4.241 20 C 0.072 3.928 21 N -0.584 5.584 22 H 0.429 0.571 23 C 0.072 3.928 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.127 0.873 28 H 0.343 0.657 29 H 0.332 0.668 30 H -0.016 1.016 31 H -0.012 1.012 32 H 0.263 0.737 33 H 0.108 0.892 34 H 0.153 0.847 35 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.337 -13.775 -8.179 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.100 4.100 3 C -0.138 4.138 4 C -0.095 4.095 5 C 0.032 3.968 6 H 0.087 0.913 7 N -0.357 5.357 8 C -0.025 4.025 9 C -0.574 4.574 10 H 0.085 0.915 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.791 3.209 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.183 1.183 17 C -0.108 4.108 18 C -0.135 4.135 19 C -0.266 4.266 20 C -0.055 4.055 21 N -0.189 5.189 22 H 0.268 0.732 23 C -0.035 4.035 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.145 0.855 28 H 0.156 0.844 29 H 0.144 0.856 30 H 0.002 0.998 31 H 0.006 0.994 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.171 0.829 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -9.950 -14.027 -8.592 19.224 hybrid contribution 0.954 1.211 1.460 2.123 sum -8.997 -12.816 -7.133 17.206 Atomic orbital electron populations 1.20711 0.88729 1.03724 1.02832 1.19099 0.97023 0.89399 1.04475 1.20751 0.93107 0.97642 1.02296 1.19506 0.94151 0.94659 1.01147 1.20184 0.92162 0.92862 0.91582 0.91301 1.59271 1.11918 1.11534 1.52940 1.19648 0.94407 0.95424 0.93026 1.21580 1.38569 1.02162 0.95120 0.91546 1.25986 0.96556 1.01915 0.95211 1.70126 1.47490 1.39583 1.00177 0.85425 0.78070 0.79117 0.78287 1.19987 1.21096 1.18298 1.20003 0.99065 0.90757 1.00976 1.19582 0.93207 0.94453 1.06232 1.21969 0.99858 0.89878 1.14874 1.22426 0.84284 0.97901 1.00865 1.41714 1.09517 1.02795 1.64910 0.73179 1.18127 0.93403 0.85908 1.06099 0.90775 0.90478 0.90461 0.85500 0.84390 0.85592 0.99754 0.99412 0.92875 0.87371 0.82903 0.76694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.15 10.02 71.24 0.71 -1.44 16 2 C -0.10 -2.96 5.89 -19.77 -0.12 -3.08 16 3 C -0.12 -4.31 9.29 22.29 0.21 -4.10 16 4 C -0.09 -3.83 4.93 -20.10 -0.10 -3.93 16 5 C 0.14 6.42 2.98 44.17 0.13 6.55 16 6 H 0.07 3.09 7.99 -2.39 -0.02 3.07 16 7 N -0.83 -33.57 9.01 -171.79 -1.55 -35.11 16 8 C 0.01 0.74 4.59 29.85 0.14 0.88 16 9 C -0.54 -30.27 8.55 25.60 0.22 -30.05 16 10 H 0.07 3.54 7.14 -2.91 -0.02 3.52 16 11 C 0.00 0.07 5.46 84.66 0.46 0.53 16 12 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 13 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 15 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 16 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 17 C -0.09 -3.52 9.28 22.23 0.21 -3.32 16 18 C -0.13 -4.52 6.37 -20.20 -0.13 -4.64 16 19 C -0.24 -6.43 11.08 23.51 0.26 -6.17 16 20 C 0.07 1.36 11.81 83.00 0.98 2.34 16 21 N -0.58 -12.02 6.07 -187.61 -1.14 -13.16 16 22 H 0.43 5.52 8.87 -92.71 -0.82 4.70 16 23 C 0.07 2.17 6.95 39.03 0.27 2.44 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 26 H 0.08 1.21 7.99 -2.39 -0.02 1.19 16 27 H 0.13 4.30 8.02 -2.91 -0.02 4.28 16 28 H 0.34 13.84 7.90 -89.69 -0.71 13.13 16 29 H 0.33 13.13 7.31 -89.70 -0.66 12.48 16 30 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 31 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.11 4.27 6.62 -2.91 -0.02 4.25 16 34 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.22 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -71.91 295.22 1.81 -70.10 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: -1.06 Total: 33.27 kcal Atomic # 6 Polarization: -47.26 SS G_CDS: 3.24 Total: -44.01 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -2.40 Total: -105.80 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -71.91 1.81 -70.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260182371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.342 kcal (2) G-P(sol) polarization free energy of solvation -71.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds