Wall clock time and date at job start Mon Mar 30 2020 05:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37793 * 120.10942 * 2 1 4 4 C 1.38787 * 120.66535 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.73492 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47448 * 19.99100 * 5 4 3 7 7 N 1.46898 * 109.47418 * 140.00000 * 5 4 3 8 8 C 1.53007 * 109.46630 * 259.99808 * 5 4 3 9 9 C 1.50704 * 109.47016 * 175.00048 * 8 5 4 10 10 H 1.08004 * 119.99913 * 359.97438 * 9 8 5 11 11 C 1.37878 * 119.99959 * 179.97438 * 9 8 5 12 12 N 1.31517 * 119.99826 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00015 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47024 * 89.99480 * 13 11 9 15 15 H 1.48493 * 109.47175 * 209.99472 * 13 11 9 16 16 H 1.48495 * 109.47049 * 329.99633 * 13 11 9 17 17 C 1.36663 * 120.52644 * 0.02562 * 4 3 2 18 18 C 1.39581 * 119.76636 * 359.97438 * 17 4 3 19 19 C 1.46493 * 134.03676 * 179.97438 * 18 17 4 20 20 C 1.34248 * 106.99921 * 179.28523 * 19 18 17 21 21 N 1.36832 * 109.93291 * 0.66207 * 20 19 18 22 22 H 0.96998 * 125.05899 * 179.40181 * 21 20 19 23 23 C 1.37692 * 109.87872 * 359.41203 * 21 20 19 24 24 H 1.09002 * 109.47152 * 90.00084 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00184 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00165 * 1 2 3 27 27 H 1.08002 * 119.66546 * 0.02562 * 3 2 1 28 28 H 1.00901 * 111.00301 * 59.99694 * 7 5 4 29 29 H 1.00900 * 111.00220 * 183.95211 * 7 5 4 30 30 H 1.09008 * 109.46982 * 294.99442 * 8 5 4 31 31 H 1.08997 * 109.47341 * 54.99703 * 8 5 4 32 32 H 0.96998 * 119.99743 * 180.02562 * 12 11 9 33 33 H 1.07999 * 120.11397 * 179.97438 * 17 4 3 34 34 H 1.08006 * 126.50030 * 0.02562 * 19 18 17 35 35 H 1.07995 * 125.03305 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1920 0.0000 4 6 3.5861 1.2055 0.0005 5 6 4.3208 2.5212 0.0011 6 1 3.6547 3.3092 0.3523 7 7 5.4855 2.4314 0.8918 8 6 4.7887 2.8446 -1.4193 9 6 5.4148 4.2152 -1.4422 10 1 5.4727 4.7976 -0.5344 11 6 5.9136 4.7257 -2.6218 12 7 6.4595 5.9220 -2.6418 13 14 5.8126 3.7187 -4.1919 14 1 4.5371 4.0181 -4.8908 15 1 6.9545 4.0645 -5.0760 16 1 5.8661 2.2730 -3.8570 17 6 4.2916 0.0350 0.0005 18 6 3.6117 -1.1840 0.0006 19 6 4.0354 -2.5863 0.0001 20 6 2.9201 -3.3333 0.0164 21 7 1.8166 -2.5242 0.0124 22 1 0.8978 -2.8350 0.0136 23 6 2.2047 -1.2031 0.0062 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6546 2.1252 0.0004 28 1 6.1188 1.7073 0.5870 29 1 5.9583 3.3202 0.9596 30 1 5.5230 2.1044 -1.7373 31 1 3.9350 2.8237 -2.0967 32 1 6.8100 6.2813 -3.4718 33 1 5.3715 0.0533 0.0005 34 1 5.0523 -2.9502 0.0000 35 1 2.8971 -4.4130 0.0207 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260182372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:23 Heat of formation + Delta-G solvation = 42.632998 kcal Electronic energy + Delta-G solvation = -16974.906063 eV Core-core repulsion = 14358.386378 eV Total energy + Delta-G solvation = -2616.519684 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05965 -37.69814 -35.02704 -32.87009 -32.10200 -29.57637 -28.87104 -28.38721 -26.51802 -24.30881 -21.79413 -21.38813 -20.21233 -19.32573 -17.68535 -16.94180 -15.90086 -15.01808 -14.72249 -14.53242 -14.20560 -13.51564 -13.22548 -13.14651 -13.05696 -12.92181 -12.70131 -12.32564 -12.10966 -11.99364 -11.46732 -11.25265 -10.72587 -10.61274 -10.47150 -10.01915 -9.73574 -9.34806 -9.19661 -8.58340 -7.99172 -7.66389 -7.31239 -6.08491 -4.07373 1.40144 1.98481 2.86648 3.25183 3.29426 3.37063 3.42533 4.21518 4.42881 4.89109 4.93320 5.09906 5.21674 5.26253 5.44047 5.55042 5.61498 5.68728 5.80955 5.84936 5.88127 6.11251 6.18851 6.31112 6.50180 6.60539 6.75647 6.91627 6.98641 7.11734 7.14063 7.35686 7.48479 7.64623 7.73482 8.04184 8.30195 8.47770 8.94814 9.54436 11.04264 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028195 B = 0.005872 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.860464 B = 4767.374901 C = 4860.240493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.106 4.106 3 C -0.090 4.090 4 C -0.075 4.075 5 C 0.140 3.860 6 H 0.079 0.921 7 N -0.839 5.839 8 C -0.038 4.038 9 C -0.523 4.523 10 H 0.074 0.926 11 C 0.070 3.930 12 N -0.900 5.900 13 Si 0.878 3.122 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.266 1.266 17 C -0.067 4.067 18 C -0.106 4.106 19 C -0.203 4.203 20 C 0.039 3.961 21 N -0.600 5.600 22 H 0.409 0.591 23 C 0.087 3.913 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.124 0.876 28 H 0.328 0.672 29 H 0.350 0.650 30 H 0.016 0.984 31 H 0.015 0.985 32 H 0.263 0.737 33 H 0.119 0.881 34 H 0.142 0.858 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.691 -17.104 4.949 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.109 4.109 3 C -0.109 4.109 4 C -0.076 4.076 5 C 0.029 3.971 6 H 0.097 0.903 7 N -0.368 5.368 8 C -0.077 4.077 9 C -0.561 4.561 10 H 0.092 0.908 11 C -0.132 4.132 12 N -0.539 5.539 13 Si 0.705 3.295 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.190 1.190 17 C -0.086 4.086 18 C -0.110 4.110 19 C -0.229 4.229 20 C -0.087 4.087 21 N -0.203 5.203 22 H 0.245 0.755 23 C -0.019 4.019 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.164 0.836 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.233 -17.203 5.414 20.736 hybrid contribution 0.183 -0.361 -1.906 1.949 sum -10.050 -17.565 3.508 20.538 Atomic orbital electron populations 1.20637 0.91746 1.02108 1.01775 1.18743 0.94926 0.90176 1.07016 1.20642 0.93656 0.96344 1.00271 1.19606 0.93196 0.95484 0.99329 1.20241 0.92029 0.91708 0.93165 0.90272 1.59247 1.12165 1.11825 1.53544 1.20319 0.96423 0.97588 0.93339 1.21081 1.38420 0.99762 0.96821 0.90769 1.24993 0.94553 0.94700 0.98919 1.69913 1.40031 1.16538 1.27417 0.86807 0.77723 0.81391 0.83566 1.20312 1.21423 1.19020 1.20007 0.99399 0.89825 0.99340 1.19183 0.91935 0.93546 1.06340 1.21690 0.97987 0.91074 1.12163 1.21683 0.85753 0.96029 1.05259 1.41667 1.08111 1.04234 1.66311 0.75461 1.17999 0.93808 0.84284 1.05785 0.91705 0.91252 0.92932 0.85776 0.86074 0.83645 0.96540 0.96674 0.92707 0.86345 0.83986 0.81814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.02 36.01 0.36 -0.80 16 2 C -0.11 -1.57 5.89 -104.47 -0.62 -2.18 16 3 C -0.09 -1.50 9.29 -39.54 -0.37 -1.86 16 4 C -0.07 -1.38 4.93 -104.99 -0.52 -1.90 16 5 C 0.14 2.86 2.98 -68.86 -0.21 2.65 16 6 H 0.08 1.66 7.99 -51.93 -0.41 1.24 16 7 N -0.84 -16.08 9.01 -5.65 -0.05 -16.13 16 8 C -0.04 -0.90 3.66 -27.88 -0.10 -1.00 16 9 C -0.52 -14.48 9.10 -34.44 -0.31 -14.79 16 10 H 0.07 2.18 7.39 -52.48 -0.39 1.79 16 11 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 13 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 17 C -0.07 -1.19 9.28 -39.65 -0.37 -1.55 16 18 C -0.11 -1.73 6.37 -105.14 -0.67 -2.40 16 19 C -0.20 -2.71 11.08 -37.66 -0.42 -3.13 16 20 C 0.04 0.41 11.82 -16.73 -0.20 0.21 16 21 N -0.60 -6.80 6.07 -10.65 -0.06 -6.86 16 22 H 0.41 3.30 8.86 -40.82 -0.36 2.94 16 23 C 0.09 1.30 6.95 -83.99 -0.58 0.72 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.05 0.48 7.98 -51.93 -0.41 0.07 16 27 H 0.12 1.90 8.02 -52.49 -0.42 1.48 16 28 H 0.33 5.93 7.32 -39.29 -0.29 5.64 16 29 H 0.35 7.00 7.90 -39.29 -0.31 6.69 16 30 H 0.02 0.40 7.20 -51.92 -0.37 0.03 16 31 H 0.01 0.37 7.57 -51.93 -0.39 -0.03 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 33 H 0.12 2.02 6.62 -52.49 -0.35 1.68 16 34 H 0.14 1.62 8.06 -52.48 -0.42 1.19 16 35 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 291.60 15.07 4.39 4.39 Total: -1.00 -32.04 291.60 -8.28 -40.31 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -4.57 Total: 11.77 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -4.09 Total: -24.12 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.66 Total: -49.67 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.04 -8.28 -40.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260182372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.946 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds