Wall clock time and date at job start Mon Mar 30 2020 05:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37793 * 120.10942 * 2 1 4 4 C 1.38787 * 120.66535 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.73492 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47448 * 19.99100 * 5 4 3 7 7 N 1.46898 * 109.47418 * 140.00000 * 5 4 3 8 8 C 1.53007 * 109.46630 * 259.99808 * 5 4 3 9 9 C 1.50704 * 109.47016 * 175.00048 * 8 5 4 10 10 H 1.08004 * 119.99913 * 359.97438 * 9 8 5 11 11 C 1.37878 * 119.99959 * 179.97438 * 9 8 5 12 12 N 1.31517 * 119.99826 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00015 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47024 * 89.99480 * 13 11 9 15 15 H 1.48493 * 109.47175 * 209.99472 * 13 11 9 16 16 H 1.48495 * 109.47049 * 329.99633 * 13 11 9 17 17 C 1.36663 * 120.52644 * 0.02562 * 4 3 2 18 18 C 1.39581 * 119.76636 * 359.97438 * 17 4 3 19 19 C 1.46493 * 134.03676 * 179.97438 * 18 17 4 20 20 C 1.34248 * 106.99921 * 179.28523 * 19 18 17 21 21 N 1.36832 * 109.93291 * 0.66207 * 20 19 18 22 22 H 0.96998 * 125.05899 * 179.40181 * 21 20 19 23 23 C 1.37692 * 109.87872 * 359.41203 * 21 20 19 24 24 H 1.09002 * 109.47152 * 90.00084 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00184 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00165 * 1 2 3 27 27 H 1.08002 * 119.66546 * 0.02562 * 3 2 1 28 28 H 1.00901 * 111.00301 * 59.99694 * 7 5 4 29 29 H 1.00900 * 111.00220 * 183.95211 * 7 5 4 30 30 H 1.09008 * 109.46982 * 294.99442 * 8 5 4 31 31 H 1.08997 * 109.47341 * 54.99703 * 8 5 4 32 32 H 0.96998 * 119.99743 * 180.02562 * 12 11 9 33 33 H 1.07999 * 120.11397 * 179.97438 * 17 4 3 34 34 H 1.08006 * 126.50030 * 0.02562 * 19 18 17 35 35 H 1.07995 * 125.03305 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1920 0.0000 4 6 3.5861 1.2055 0.0005 5 6 4.3208 2.5212 0.0011 6 1 3.6547 3.3092 0.3523 7 7 5.4855 2.4314 0.8918 8 6 4.7887 2.8446 -1.4193 9 6 5.4148 4.2152 -1.4422 10 1 5.4727 4.7976 -0.5344 11 6 5.9136 4.7257 -2.6218 12 7 6.4595 5.9220 -2.6418 13 14 5.8126 3.7187 -4.1919 14 1 4.5371 4.0181 -4.8908 15 1 6.9545 4.0645 -5.0760 16 1 5.8661 2.2730 -3.8570 17 6 4.2916 0.0350 0.0005 18 6 3.6117 -1.1840 0.0006 19 6 4.0354 -2.5863 0.0001 20 6 2.9201 -3.3333 0.0164 21 7 1.8166 -2.5242 0.0124 22 1 0.8978 -2.8350 0.0136 23 6 2.2047 -1.2031 0.0062 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6546 2.1252 0.0004 28 1 6.1188 1.7073 0.5870 29 1 5.9583 3.3202 0.9596 30 1 5.5230 2.1044 -1.7373 31 1 3.9350 2.8237 -2.0967 32 1 6.8100 6.2813 -3.4718 33 1 5.3715 0.0533 0.0005 34 1 5.0523 -2.9502 0.0000 35 1 2.8971 -4.4130 0.0207 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260182372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:22 Heat of formation + Delta-G solvation = 21.106771 kcal Electronic energy + Delta-G solvation = -16975.839510 eV Core-core repulsion = 14358.386378 eV Total energy + Delta-G solvation = -2617.453132 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.11571 -39.03145 -36.48652 -34.61462 -33.62085 -30.70759 -30.49209 -29.80103 -27.58217 -26.02704 -23.25732 -22.68961 -21.18764 -20.81947 -19.12138 -18.69742 -17.08357 -16.58896 -16.27917 -15.97203 -15.50703 -15.04436 -14.76355 -14.48326 -14.12171 -14.05968 -13.94892 -13.90014 -13.41919 -13.31407 -13.00249 -12.81089 -12.41111 -12.16736 -11.84399 -11.75905 -11.59246 -11.24719 -10.81042 -10.40487 -9.50246 -8.94143 -8.43852 -8.32089 -6.35328 0.27068 0.73667 1.30401 1.32368 1.44150 1.89691 2.31875 2.34749 2.97105 3.02801 3.81472 3.84822 4.02272 4.14833 4.29799 4.45362 4.46462 4.50853 4.67979 4.79547 4.81468 4.88990 4.91458 5.02400 5.14958 5.21604 5.32062 5.39476 5.54905 5.65043 5.82838 5.88789 5.92038 6.21615 6.31391 6.40800 6.70713 6.71554 6.82365 7.29630 8.83604 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028195 B = 0.005872 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.860464 B = 4767.374901 C = 4860.240493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.097 4.097 3 C -0.117 4.117 4 C -0.094 4.094 5 C 0.149 3.851 6 H 0.066 0.934 7 N -0.831 5.831 8 C -0.028 4.028 9 C -0.523 4.523 10 H 0.044 0.956 11 C 0.013 3.987 12 N -0.944 5.944 13 Si 0.941 3.059 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.257 1.257 17 C -0.087 4.087 18 C -0.129 4.129 19 C -0.239 4.239 20 C 0.071 3.929 21 N -0.585 5.585 22 H 0.428 0.572 23 C 0.073 3.927 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.128 0.872 28 H 0.334 0.666 29 H 0.342 0.658 30 H 0.013 0.987 31 H 0.011 0.989 32 H 0.266 0.734 33 H 0.113 0.887 34 H 0.154 0.846 35 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.545 -20.588 4.500 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.100 4.100 3 C -0.136 4.136 4 C -0.096 4.096 5 C 0.038 3.962 6 H 0.085 0.915 7 N -0.360 5.360 8 C -0.067 4.067 9 C -0.562 4.562 10 H 0.063 0.937 11 C -0.185 4.185 12 N -0.585 5.585 13 Si 0.766 3.234 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.181 1.181 17 C -0.106 4.106 18 C -0.134 4.134 19 C -0.264 4.264 20 C -0.056 4.056 21 N -0.190 5.190 22 H 0.268 0.732 23 C -0.034 4.034 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.155 0.845 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.172 0.828 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -12.117 -20.715 4.978 24.509 hybrid contribution 0.720 0.627 -1.675 1.928 sum -11.397 -20.088 3.303 23.331 Atomic orbital electron populations 1.20717 0.88846 1.03649 1.02895 1.19091 0.96956 0.89426 1.04483 1.20762 0.93093 0.97648 1.02137 1.19437 0.94070 0.94372 1.01700 1.20033 0.92204 0.93027 0.90974 0.91533 1.59235 1.12089 1.11503 1.53141 1.20216 0.95709 0.95077 0.95723 1.21343 1.37962 1.01110 0.95735 0.93736 1.25840 0.94387 0.95755 1.02468 1.70044 1.41552 1.18377 1.28492 0.85787 0.78079 0.80090 0.79446 1.19488 1.20739 1.18116 1.20029 0.99257 0.90579 1.00729 1.19569 0.93108 0.94439 1.06294 1.21977 0.99826 0.89898 1.14717 1.22428 0.84346 0.97896 1.00926 1.41739 1.09533 1.02876 1.64840 0.73210 1.18142 0.93458 0.85848 1.05942 0.90609 0.90587 0.90609 0.85396 0.85333 0.84492 0.96858 0.97076 0.92497 0.86950 0.82843 0.76855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 10.02 71.24 0.71 -1.25 16 2 C -0.10 -2.70 5.89 -19.77 -0.12 -2.82 16 3 C -0.12 -3.90 9.29 22.30 0.21 -3.69 16 4 C -0.09 -3.56 4.93 -20.10 -0.10 -3.66 16 5 C 0.15 6.32 2.98 44.17 0.13 6.45 16 6 H 0.07 2.93 7.99 -2.39 -0.02 2.91 16 7 N -0.83 -33.12 9.01 -171.80 -1.55 -34.67 16 8 C -0.03 -1.37 3.66 29.85 0.11 -1.26 16 9 C -0.52 -29.94 9.10 25.60 0.23 -29.70 16 10 H 0.04 2.75 7.39 -2.91 -0.02 2.73 16 11 C 0.01 0.77 5.47 84.65 0.46 1.23 16 12 N -0.94 -59.04 13.96 21.45 0.30 -58.74 16 13 Si 0.94 45.65 27.47 68.60 1.88 47.53 16 14 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 15 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 16 H -0.26 -12.01 6.54 99.48 0.65 -11.36 16 17 C -0.09 -3.13 9.28 22.23 0.21 -2.92 16 18 C -0.13 -4.10 6.37 -20.20 -0.13 -4.23 16 19 C -0.24 -5.78 11.08 23.51 0.26 -5.52 16 20 C 0.07 1.19 11.82 83.00 0.98 2.17 16 21 N -0.59 -10.79 6.07 -187.60 -1.14 -11.93 16 22 H 0.43 4.74 8.86 -92.71 -0.82 3.92 16 23 C 0.07 2.02 6.95 39.03 0.27 2.29 16 24 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 26 H 0.08 1.07 7.98 -2.38 -0.02 1.05 16 27 H 0.13 3.98 8.02 -2.91 -0.02 3.96 16 28 H 0.33 12.53 7.32 -89.69 -0.66 11.88 16 29 H 0.34 14.40 7.90 -89.69 -0.71 13.69 16 30 H 0.01 0.65 7.20 -2.38 -0.02 0.63 16 31 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 32 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 33 H 0.11 3.97 6.62 -2.91 -0.02 3.95 16 34 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 35 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -71.03 291.60 1.61 -69.41 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -1.12 Total: 31.31 kcal Atomic # 6 Polarization: -46.15 SS G_CDS: 3.23 Total: -42.92 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -2.39 Total: -105.34 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.53 kcal Total: -71.03 1.61 -69.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260182372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.520 kcal (2) G-P(sol) polarization free energy of solvation -71.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds