Wall clock time and date at job start Mon Mar 30 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39867 * 125.46289 * 2 1 4 4 C 1.30242 * 110.08937 * 179.97438 * 3 2 1 5 5 C 1.45927 * 107.78124 * 359.97438 * 4 3 2 6 6 C 1.39952 * 134.03395 * 179.97438 * 5 4 3 7 7 C 1.36465 * 119.63944 * 180.02562 * 6 5 4 8 8 C 1.38966 * 120.62410 * 359.72772 * 7 6 5 9 9 C 1.50709 * 119.59024 * 180.28141 * 8 7 6 10 10 C 1.53001 * 109.46978 * 127.74247 * 9 8 7 11 11 C 1.52998 * 109.47066 * 247.74722 * 9 8 7 12 12 C 1.50700 * 109.46776 * 7.74659 * 9 8 7 13 13 H 1.08004 * 119.99385 * 242.54420 * 12 9 8 14 14 C 1.37872 * 120.00340 * 62.54999 * 12 9 8 15 15 N 1.31512 * 119.99869 * 185.00452 * 14 12 9 16 16 Si 1.86796 * 119.99925 * 4.99994 * 14 12 9 17 17 H 1.48495 * 109.47332 * 92.40239 * 16 14 12 18 18 H 1.48505 * 109.46933 * 212.40562 * 16 14 12 19 19 H 1.48502 * 109.47014 * 332.40266 * 16 14 12 20 20 C 1.36592 * 120.81907 * 0.56216 * 8 7 6 21 21 C 1.37041 * 125.45848 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.47103 * 270.02968 * 1 2 3 23 23 H 1.09006 * 109.46914 * 30.02946 * 1 2 3 24 24 H 1.08999 * 109.47033 * 150.02542 * 1 2 3 25 25 H 1.07994 * 126.11463 * 180.02562 * 4 3 2 26 26 H 1.07997 * 120.17649 * 0.03118 * 6 5 4 27 27 H 1.07997 * 119.68782 * 180.02562 * 7 6 5 28 28 H 1.08998 * 109.47025 * 65.95384 * 10 9 8 29 29 H 1.08998 * 109.46718 * 185.94686 * 10 9 8 30 30 H 1.08998 * 109.47278 * 305.94916 * 10 9 8 31 31 H 1.09000 * 109.47210 * 59.99584 * 11 9 8 32 32 H 1.08996 * 109.47165 * 180.02562 * 11 9 8 33 33 H 1.09008 * 109.46885 * 299.99519 * 11 9 8 34 34 H 0.97006 * 119.99776 * 180.02562 * 15 14 12 35 35 H 1.07996 * 120.07630 * 179.72357 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1392 0.0000 4 6 3.5323 0.7939 0.0005 5 6 3.5936 -0.6641 0.0016 6 6 4.6398 -1.5937 0.0020 7 6 4.3563 -2.9286 0.0025 8 6 3.0396 -3.3727 0.0082 9 6 2.7532 -4.8523 0.0151 10 6 1.7929 -5.1806 1.1600 11 6 2.1161 -5.2546 -1.3165 12 6 4.0406 -5.6121 0.2058 13 1 4.3921 -6.2812 -0.5658 14 6 4.7696 -5.4533 1.3652 15 7 5.9404 -6.0389 1.4912 16 14 4.0943 -4.4064 2.7570 17 1 3.3408 -5.2674 3.7035 18 1 5.2178 -3.7495 3.4723 19 1 3.1876 -3.3697 2.2016 20 6 2.0016 -2.4849 0.0020 21 6 2.2600 -1.1162 0.0005 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3633 -0.8902 -0.5134 25 1 4.3774 1.4664 0.0011 26 1 5.6657 -1.2564 0.0021 27 1 5.1630 -3.6467 0.0033 28 1 0.8260 -4.7156 0.9677 29 1 1.6685 -6.2612 1.2313 30 1 2.1999 -4.7991 2.0963 31 1 2.8003 -5.0207 -2.1321 32 1 1.9086 -6.3246 -1.3114 33 1 1.1848 -4.7050 -1.4544 34 1 6.4531 -5.9275 2.3071 35 1 0.9828 -2.8433 0.0020 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260184519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:43 Heat of formation + Delta-G solvation = 100.704495 kcal Electronic energy + Delta-G solvation = -17900.793235 eV Core-core repulsion = 15286.791720 eV Total energy + Delta-G solvation = -2614.001515 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79996 -38.03086 -34.53967 -33.05146 -31.93429 -29.71479 -28.47441 -26.57642 -26.29657 -25.13073 -22.39858 -21.47007 -20.29184 -19.02021 -17.05719 -16.37020 -15.60892 -15.19532 -14.94285 -14.33558 -13.94718 -13.51734 -13.21480 -13.03571 -12.77786 -12.49200 -12.42535 -12.29968 -11.82303 -11.53741 -11.09144 -10.66706 -10.54396 -10.44948 -10.24689 -10.04905 -9.87872 -9.54935 -9.12348 -9.11895 -8.53028 -7.61838 -7.31805 -6.16244 -4.16121 1.54387 2.21342 2.73648 2.93911 3.29386 3.41526 3.47131 4.37109 4.50988 4.73294 5.01330 5.15799 5.22306 5.28748 5.47636 5.53745 5.70688 5.96071 5.99125 6.06409 6.19714 6.25937 6.30159 6.46396 6.62968 6.67441 6.70403 6.77063 6.91143 7.04883 7.21353 7.30273 7.40808 7.49719 7.68192 7.84705 8.02862 8.45662 8.88523 9.46239 10.94813 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027162 B = 0.009344 C = 0.008333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.608794 B = 2995.942552 C = 3359.189349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.420 5.420 3 N -0.274 5.274 4 C 0.069 3.931 5 C -0.199 4.199 6 C -0.063 4.063 7 C -0.133 4.133 8 C 0.021 3.979 9 C 0.060 3.940 10 C -0.142 4.142 11 C -0.116 4.116 12 C -0.511 4.511 13 H 0.079 0.921 14 C 0.081 3.919 15 N -0.893 5.893 16 Si 0.867 3.133 17 H -0.288 1.288 18 H -0.300 1.300 19 H -0.240 1.240 20 C -0.168 4.168 21 C 0.126 3.874 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.189 0.811 26 H 0.119 0.881 27 H 0.156 0.844 28 H 0.033 0.967 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.739 9.202 -2.628 12.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.210 5.210 3 N -0.086 5.086 4 C -0.128 4.128 5 C -0.207 4.207 6 C -0.084 4.084 7 C -0.152 4.152 8 C 0.018 3.982 9 C 0.059 3.941 10 C -0.198 4.198 11 C -0.173 4.173 12 C -0.548 4.548 13 H 0.097 0.903 14 C -0.121 4.121 15 N -0.530 5.530 16 Si 0.698 3.302 17 H -0.216 1.216 18 H -0.228 1.228 19 H -0.165 1.165 20 C -0.190 4.190 21 C 0.014 3.986 22 H 0.080 0.920 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.206 0.794 26 H 0.137 0.863 27 H 0.173 0.827 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.598 10.163 -2.522 13.549 hybrid contribution 0.203 -0.087 1.058 1.081 sum -8.395 10.076 -1.463 13.196 Atomic orbital electron populations 1.21590 0.75092 1.03545 1.02337 1.47960 1.05256 1.01343 1.66454 1.76404 1.02744 1.09385 1.20103 1.24919 0.94395 0.93537 0.99922 1.19831 0.93381 0.92794 1.14645 1.20401 0.97048 0.92419 0.98499 1.21381 0.98613 0.94942 1.00290 1.20249 0.91963 0.97109 0.88881 1.17719 0.95971 0.87685 0.92701 1.22284 0.97566 1.01174 0.98814 1.21651 0.98173 1.00198 0.97272 1.20840 1.03722 1.26093 1.04176 0.90261 1.24995 0.94330 0.94873 0.97935 1.69905 1.11817 1.43798 1.27452 0.87373 0.78289 0.81881 0.82633 1.21567 1.22781 1.16502 1.19649 0.99693 0.88220 1.11394 1.18802 0.90496 0.89298 1.00049 0.91984 0.90127 0.90131 0.79407 0.86308 0.82661 0.94813 0.92367 0.94180 0.93274 0.92979 0.94969 0.92490 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.42 11.40 59.85 0.68 2.10 16 2 N -0.42 -7.16 4.05 -65.46 -0.27 -7.43 16 3 N -0.27 -4.68 12.40 31.87 0.40 -4.29 16 4 C 0.07 1.11 12.28 -15.15 -0.19 0.93 16 5 C -0.20 -3.74 6.37 -105.20 -0.67 -4.41 16 6 C -0.06 -1.21 10.07 -39.58 -0.40 -1.61 16 7 C -0.13 -2.90 6.70 -39.95 -0.27 -3.16 16 8 C 0.02 0.45 2.49 -104.94 -0.26 0.19 16 9 C 0.06 1.31 0.59 -156.81 -0.09 1.22 16 10 C -0.14 -2.93 7.37 37.16 0.27 -2.66 16 11 C -0.12 -2.19 8.29 37.16 0.31 -1.89 16 12 C -0.51 -13.21 7.42 -34.44 -0.26 -13.47 16 13 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 14 C 0.08 2.20 4.09 -17.82 -0.07 2.13 16 15 N -0.89 -25.82 13.96 55.43 0.77 -25.04 16 16 Si 0.87 21.39 22.13 -169.99 -3.76 17.63 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 19 H -0.24 -5.71 4.43 56.52 0.25 -5.46 16 20 C -0.17 -3.26 8.48 -39.79 -0.34 -3.59 16 21 C 0.13 2.42 6.87 -84.17 -0.58 1.84 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.19 2.20 8.06 -52.49 -0.42 1.78 16 26 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 27 H 0.16 3.71 5.53 -52.49 -0.29 3.42 16 28 H 0.03 0.59 7.20 -51.93 -0.37 0.22 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.89 2.81 -51.93 -0.15 0.74 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.53 7.81 -51.92 -0.41 0.12 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.11 1.97 7.09 -52.49 -0.37 1.60 16 LS Contribution 275.28 15.07 4.15 4.15 Total: -1.00 -30.44 275.28 -5.24 -35.68 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.67 Total: 1.69 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -1.86 Total: -22.39 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.90 Total: -36.76 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -3.76 Total: 17.63 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.44 -5.24 -35.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.387 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds