Wall clock time and date at job start Mon Mar 30 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.28572 * 122.67741 * 2 1 4 4 C 1.46965 * 110.02606 * 179.90219 * 3 2 1 5 5 C 1.54215 * 103.99282 * 0.13261 * 4 3 2 6 6 N 1.36447 * 122.72653 * 180.02562 * 2 1 3 7 7 C 1.39843 * 125.83938 * 0.03423 * 6 2 1 8 8 C 1.38923 * 120.07019 * 112.72165 * 7 6 2 9 9 C 1.38086 * 119.92595 * 179.74689 * 8 7 6 10 10 C 1.38304 * 120.07319 * 0.55728 * 9 8 7 11 11 C 1.38266 * 120.14680 * 359.69361 * 10 9 8 12 12 C 1.50700 * 119.96450 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47303 * 270.02731 * 12 11 10 14 14 H 1.07997 * 120.00135 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00082 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00096 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00181 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46858 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46971 * 119.99737 * 17 15 13 20 20 H 1.48503 * 109.46989 * 239.99701 * 17 15 13 21 21 C 1.38130 * 120.06997 * 0.02801 * 11 10 9 22 22 H 1.08996 * 109.47360 * 274.53305 * 1 2 3 23 23 H 1.09008 * 109.47158 * 34.53478 * 1 2 3 24 24 H 1.09005 * 109.46880 * 154.53024 * 1 2 3 25 25 H 1.08992 * 110.54758 * 241.45912 * 4 3 2 26 26 H 1.09004 * 110.54337 * 118.79495 * 4 3 2 27 27 H 1.09003 * 110.69810 * 118.31961 * 5 4 3 28 28 H 1.08995 * 110.69546 * 241.35523 * 5 4 3 29 29 H 1.08000 * 120.03277 * 0.02748 * 8 7 6 30 30 H 1.08002 * 119.96242 * 180.25508 * 9 8 7 31 31 H 1.08000 * 119.92724 * 179.72506 * 10 9 8 32 32 H 1.09000 * 109.47102 * 30.02977 * 12 11 10 33 33 H 1.09001 * 109.46947 * 150.02580 * 12 11 10 34 34 H 0.96999 * 120.00107 * 180.02562 * 16 15 13 35 35 H 1.08004 * 120.03481 * 180.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2011 1.0822 0.0000 4 6 3.6351 0.7603 0.0024 5 6 3.6712 -0.7814 0.0004 6 7 2.2446 -1.1479 -0.0005 7 6 1.7336 -2.4496 -0.0018 8 6 1.9120 -3.2664 -1.1113 9 6 1.4107 -4.5530 -1.1073 10 6 0.7216 -5.0249 -0.0049 11 6 0.5377 -4.2128 1.0990 12 6 -0.2143 -4.7310 2.2977 13 6 -1.6814 -4.4245 2.1414 14 1 -2.0340 -3.9059 1.2621 15 6 -2.5735 -4.8051 3.1213 16 7 -2.1441 -5.4362 4.1923 17 14 -4.3923 -4.4258 2.9272 18 1 -4.6152 -3.7142 1.6429 19 1 -5.1656 -5.6935 2.9319 20 1 -4.8418 -3.5676 4.0526 21 6 1.0416 -2.9267 1.1037 22 1 -0.3634 0.0812 1.0244 23 1 -0.3634 0.8466 -0.5826 24 1 -0.3633 -0.9278 -0.4420 25 1 4.1139 1.1532 0.8992 26 1 4.1173 1.1555 -0.8918 27 1 4.1656 -1.1540 -0.8968 28 1 4.1671 -1.1562 0.8957 29 1 2.4462 -2.8969 -1.9742 30 1 1.5527 -5.1899 -1.9679 31 1 0.3267 -6.0301 -0.0060 32 1 -0.0747 -5.8092 2.3760 33 1 0.1634 -4.2493 3.1996 34 1 -2.7717 -5.7043 4.8815 35 1 0.8980 -2.2930 1.9664 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260188440.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:22 Heat of formation + Delta-G solvation = 50.576513 kcal Electronic energy + Delta-G solvation = -16969.620318 eV Core-core repulsion = 14353.445090 eV Total energy + Delta-G solvation = -2616.175228 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.41255 -38.35815 -33.87521 -32.80745 -31.75187 -31.16990 -28.80797 -27.11550 -26.91873 -23.47495 -22.84414 -21.94665 -20.52375 -18.71328 -16.83992 -16.33160 -16.04146 -15.68848 -14.77993 -14.57869 -14.41131 -13.68060 -13.24501 -12.99671 -12.63943 -12.51116 -12.20850 -12.16438 -12.04332 -11.74430 -11.44658 -11.30156 -10.99987 -10.71351 -10.54721 -10.44916 -9.87377 -9.65417 -9.51299 -8.52961 -8.47623 -8.04976 -7.60330 -6.10488 -4.14801 1.70409 1.93786 2.61018 3.16532 3.25916 3.34073 3.38219 4.21386 4.42466 4.48758 4.66397 5.01742 5.24428 5.31714 5.35076 5.42628 5.53242 5.57557 5.71117 5.81189 5.86060 5.92406 5.94071 6.08253 6.11025 6.29835 6.48054 6.59173 6.88463 7.01191 7.05187 7.34518 7.48465 7.71782 7.85012 7.90855 8.08135 8.23493 8.90533 9.49729 10.99527 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025579 B = 0.006102 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.381379 B = 4587.760977 C = 5150.705247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.382 3.618 3 N -0.586 5.586 4 C 0.025 3.975 5 C 0.080 3.920 6 N -0.591 5.591 7 C 0.146 3.854 8 C -0.150 4.150 9 C -0.111 4.111 10 C -0.122 4.122 11 C -0.021 4.021 12 C 0.047 3.953 13 C -0.512 4.512 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.122 4.122 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.262 0.738 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.783 5.917 -9.042 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.106 3.894 3 N -0.315 5.315 4 C -0.105 4.105 5 C -0.043 4.043 6 N -0.309 5.309 7 C 0.055 3.945 8 C -0.170 4.170 9 C -0.130 4.130 10 C -0.141 4.141 11 C -0.021 4.021 12 C 0.010 3.990 13 C -0.550 4.550 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.142 4.142 22 H 0.109 0.891 23 H 0.105 0.895 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.730 6.755 -8.878 14.166 hybrid contribution -0.528 -0.706 0.005 0.882 sum 8.202 6.049 -8.874 13.514 Atomic orbital electron populations 1.20639 0.86368 1.04187 1.04573 1.23325 0.95596 0.82391 0.88040 1.74354 1.02222 1.23549 1.31339 1.23031 0.93167 0.91860 1.02401 1.22668 0.82579 0.97022 1.02058 1.45358 1.05158 1.03209 1.77146 1.17275 0.99740 0.83254 0.94249 1.20943 1.04051 0.95021 0.97031 1.20926 0.98650 0.95024 0.98358 1.21188 0.99082 1.00537 0.93263 1.20618 0.92133 0.92140 0.97251 1.18389 0.94155 0.96894 0.89563 1.21056 0.90945 1.37749 1.05299 0.92324 1.25008 0.99086 0.95015 0.95137 1.69962 1.34849 1.39462 1.08933 0.86489 0.84921 0.78142 0.78244 1.19579 1.20908 1.20896 1.21222 0.99830 0.96166 0.96974 0.89106 0.89477 0.90003 0.90048 0.90150 0.91139 0.90912 0.87089 0.86506 0.86003 0.95075 0.95276 0.92817 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.89 36.00 0.36 -1.02 16 2 C 0.38 5.92 7.62 -155.69 -1.19 4.73 16 3 N -0.59 -9.20 11.60 -57.30 -0.67 -9.87 16 4 C 0.03 0.32 8.04 -3.15 -0.03 0.29 16 5 C 0.08 1.02 7.71 -2.97 -0.02 0.99 16 6 N -0.59 -9.06 3.04 -110.07 -0.33 -9.39 16 7 C 0.15 2.41 4.90 -83.72 -0.41 2.00 16 8 C -0.15 -2.29 9.97 -39.38 -0.39 -2.68 16 9 C -0.11 -1.70 10.04 -39.61 -0.40 -2.09 16 10 C -0.12 -2.21 9.70 -39.55 -0.38 -2.59 16 11 C -0.02 -0.42 5.07 -104.65 -0.53 -0.95 16 12 C 0.05 1.15 5.10 -29.04 -0.15 1.01 16 13 C -0.51 -13.77 9.09 -34.44 -0.31 -14.08 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 17 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 C -0.12 -2.30 9.29 -39.39 -0.37 -2.66 16 22 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 24 H 0.08 1.18 7.44 -51.93 -0.39 0.80 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 LS Contribution 301.40 15.07 4.54 4.54 Total: -1.00 -29.45 301.40 -9.65 -39.11 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.00 Total: 0.24 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -3.92 Total: -15.53 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.26 Total: -44.28 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.45 -9.65 -39.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260188440.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.683 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds