Wall clock time and date at job start Mon Mar 30 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.28572 * 122.67741 * 2 1 4 4 C 1.46965 * 110.02606 * 179.90219 * 3 2 1 5 5 C 1.54215 * 103.99282 * 0.13261 * 4 3 2 6 6 N 1.36447 * 122.72653 * 180.02562 * 2 1 3 7 7 C 1.39843 * 125.83938 * 0.03423 * 6 2 1 8 8 C 1.38923 * 120.07019 * 112.72165 * 7 6 2 9 9 C 1.38086 * 119.92595 * 179.74689 * 8 7 6 10 10 C 1.38304 * 120.07319 * 0.55728 * 9 8 7 11 11 C 1.38266 * 120.14680 * 359.69361 * 10 9 8 12 12 C 1.50700 * 119.96450 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47303 * 270.02731 * 12 11 10 14 14 H 1.07997 * 120.00135 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00082 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00096 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00181 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46858 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46971 * 119.99737 * 17 15 13 20 20 H 1.48503 * 109.46989 * 239.99701 * 17 15 13 21 21 C 1.38130 * 120.06997 * 0.02801 * 11 10 9 22 22 H 1.08996 * 109.47360 * 274.53305 * 1 2 3 23 23 H 1.09008 * 109.47158 * 34.53478 * 1 2 3 24 24 H 1.09005 * 109.46880 * 154.53024 * 1 2 3 25 25 H 1.08992 * 110.54758 * 241.45912 * 4 3 2 26 26 H 1.09004 * 110.54337 * 118.79495 * 4 3 2 27 27 H 1.09003 * 110.69810 * 118.31961 * 5 4 3 28 28 H 1.08995 * 110.69546 * 241.35523 * 5 4 3 29 29 H 1.08000 * 120.03277 * 0.02748 * 8 7 6 30 30 H 1.08002 * 119.96242 * 180.25508 * 9 8 7 31 31 H 1.08000 * 119.92724 * 179.72506 * 10 9 8 32 32 H 1.09000 * 109.47102 * 30.02977 * 12 11 10 33 33 H 1.09001 * 109.46947 * 150.02580 * 12 11 10 34 34 H 0.96999 * 120.00107 * 180.02562 * 16 15 13 35 35 H 1.08004 * 120.03481 * 180.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2011 1.0822 0.0000 4 6 3.6351 0.7603 0.0024 5 6 3.6712 -0.7814 0.0004 6 7 2.2446 -1.1479 -0.0005 7 6 1.7336 -2.4496 -0.0018 8 6 1.9120 -3.2664 -1.1113 9 6 1.4107 -4.5530 -1.1073 10 6 0.7216 -5.0249 -0.0049 11 6 0.5377 -4.2128 1.0990 12 6 -0.2143 -4.7310 2.2977 13 6 -1.6814 -4.4245 2.1414 14 1 -2.0340 -3.9059 1.2621 15 6 -2.5735 -4.8051 3.1213 16 7 -2.1441 -5.4362 4.1923 17 14 -4.3923 -4.4258 2.9272 18 1 -4.6152 -3.7142 1.6429 19 1 -5.1656 -5.6935 2.9319 20 1 -4.8418 -3.5676 4.0526 21 6 1.0416 -2.9267 1.1037 22 1 -0.3634 0.0812 1.0244 23 1 -0.3634 0.8466 -0.5826 24 1 -0.3633 -0.9278 -0.4420 25 1 4.1139 1.1532 0.8992 26 1 4.1173 1.1555 -0.8918 27 1 4.1656 -1.1540 -0.8968 28 1 4.1671 -1.1562 0.8957 29 1 2.4462 -2.8969 -1.9742 30 1 1.5527 -5.1899 -1.9679 31 1 0.3267 -6.0301 -0.0060 32 1 -0.0747 -5.8092 2.3760 33 1 0.1634 -4.2493 3.1996 34 1 -2.7717 -5.7043 4.8815 35 1 0.8980 -2.2930 1.9664 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260188440.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:22 Heat of formation + Delta-G solvation = 34.425384 kcal Electronic energy + Delta-G solvation = -16970.320683 eV Core-core repulsion = 14353.445090 eV Total energy + Delta-G solvation = -2616.875593 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.58409 -39.69955 -35.63133 -34.30759 -32.93952 -32.68193 -30.14323 -28.86536 -28.01965 -25.31602 -24.05687 -23.19402 -21.93130 -19.95999 -18.52534 -18.02378 -17.15519 -17.01084 -16.50332 -16.01534 -15.61669 -14.96412 -14.54154 -14.33952 -14.19667 -14.04576 -13.47331 -13.36522 -13.18878 -13.10502 -13.08062 -12.84600 -12.65175 -12.36770 -12.17193 -11.87392 -11.51880 -11.33941 -11.00153 -10.61122 -9.80033 -9.52826 -8.80520 -8.20306 -6.33133 0.35798 0.56619 1.40506 1.41728 1.44754 1.54556 2.01759 2.40075 2.88742 3.11647 3.42237 3.61951 4.03888 4.10276 4.14207 4.32647 4.36034 4.50333 4.56185 4.59211 4.63443 4.71057 4.79392 4.88348 4.92887 5.13879 5.16473 5.30334 5.32820 5.37618 5.55605 5.65055 5.75334 5.96779 6.03985 6.18268 6.66946 6.80060 6.94875 7.35899 8.89538 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025579 B = 0.006102 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.381379 B = 4587.760977 C = 5150.705247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.370 3.630 3 N -0.605 5.605 4 C 0.023 3.977 5 C 0.078 3.922 6 N -0.598 5.598 7 C 0.153 3.847 8 C -0.137 4.137 9 C -0.094 4.094 10 C -0.132 4.132 11 C -0.048 4.048 12 C 0.056 3.944 13 C -0.524 4.524 14 H 0.058 0.942 15 C 0.005 3.995 16 N -0.932 5.932 17 Si 0.963 3.037 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.279 1.279 21 C -0.132 4.132 22 H 0.085 0.915 23 H 0.103 0.897 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.142 0.858 30 H 0.157 0.843 31 H 0.122 0.878 32 H 0.008 0.992 33 H -0.002 1.002 34 H 0.265 0.735 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.315 6.646 -11.539 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.095 3.905 3 N -0.334 5.334 4 C -0.106 4.106 5 C -0.044 4.044 6 N -0.316 5.316 7 C 0.062 3.938 8 C -0.156 4.156 9 C -0.112 4.112 10 C -0.151 4.151 11 C -0.049 4.049 12 C 0.019 3.981 13 C -0.562 4.562 14 H 0.076 0.924 15 C -0.193 4.193 16 N -0.572 5.572 17 Si 0.787 3.213 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.205 1.205 21 C -0.153 4.153 22 H 0.104 0.896 23 H 0.122 0.878 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.160 0.840 30 H 0.175 0.825 31 H 0.140 0.860 32 H 0.026 0.974 33 H 0.017 0.983 34 H 0.074 0.926 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.283 7.500 -11.385 16.494 hybrid contribution -0.586 -0.878 0.760 1.300 sum 8.697 6.622 -10.625 15.244 Atomic orbital electron populations 1.20645 0.85972 1.04472 1.04484 1.23526 0.96117 0.82529 0.88322 1.74320 1.04031 1.23893 1.31128 1.23167 0.91708 0.92001 1.03717 1.22848 0.81215 0.97026 1.03298 1.45481 1.06309 1.02595 1.77217 1.17245 0.98839 0.83994 0.93735 1.21287 1.02796 0.94505 0.97051 1.21262 0.96416 0.95388 0.98165 1.21249 0.99923 1.00358 0.93528 1.20245 0.94179 0.93577 0.96863 1.18117 0.94131 0.95199 0.90686 1.21385 0.92308 1.37314 1.05186 0.92375 1.25903 1.03859 0.94782 0.94745 1.70086 1.36528 1.40692 1.09860 0.85426 0.79181 0.78146 0.78522 1.18560 1.20234 1.20483 1.21035 1.01165 0.95454 0.97604 0.89646 0.87790 0.90805 0.89297 0.88260 0.88894 0.90686 0.83977 0.82520 0.86028 0.97370 0.98320 0.92626 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 9.89 71.23 0.70 -1.93 16 2 C 0.37 10.98 7.62 138.22 1.05 12.04 16 3 N -0.61 -17.96 11.60 -335.21 -3.89 -21.85 16 4 C 0.02 0.54 8.04 86.70 0.70 1.23 16 5 C 0.08 1.78 7.71 86.64 0.67 2.45 16 6 N -0.60 -17.21 3.04 -502.15 -1.53 -18.73 16 7 C 0.15 4.83 4.90 38.18 0.19 5.02 16 8 C -0.14 -3.67 9.97 22.40 0.22 -3.44 16 9 C -0.09 -2.56 10.04 22.25 0.22 -2.33 16 10 C -0.13 -4.67 9.70 22.29 0.22 -4.46 16 11 C -0.05 -2.02 5.07 -19.88 -0.10 -2.12 16 12 C 0.06 2.90 5.10 29.10 0.15 3.05 16 13 C -0.52 -29.09 9.09 25.60 0.23 -28.85 16 14 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 15 C 0.01 0.29 5.46 84.65 0.46 0.75 16 16 N -0.93 -55.48 13.29 21.45 0.28 -55.20 16 17 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 21 C -0.13 -5.08 9.29 22.40 0.21 -4.87 16 22 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 23 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 24 H 0.07 2.09 7.44 -2.38 -0.02 2.08 16 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 30 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 31 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 32 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 33 H 0.00 -0.09 8.08 -2.39 -0.02 -0.11 16 34 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.10 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -64.67 301.40 2.88 -61.79 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.06 Total: 12.00 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 4.92 Total: -23.47 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -5.13 Total: -95.78 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -64.67 2.88 -61.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260188440.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.215 kcal (2) G-P(sol) polarization free energy of solvation -64.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds