Wall clock time and date at job start Mon Mar 30 2020 07:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38275 * 120.11460 * 2 1 4 4 C 1.37923 * 119.77649 * 179.90323 * 3 2 1 5 5 C 1.38920 * 120.54457 * 0.03589 * 4 3 2 6 6 C 1.37668 * 119.67859 * 0.18028 * 5 4 3 7 7 C 1.37926 * 120.11855 * 180.02562 * 2 1 3 8 8 C 1.50630 * 122.56062 * 179.30215 * 6 5 4 9 9 C 1.53004 * 109.26150 * 257.52720 * 8 6 5 10 10 C 1.53001 * 109.24824 * 138.09360 * 8 6 5 11 11 C 1.52733 * 110.58348 * 17.81102 * 8 6 5 12 12 H 1.09000 * 109.71323 * 68.61764 * 11 8 6 13 13 C 1.50702 * 109.68081 * 189.15273 * 11 8 6 14 14 H 1.08002 * 120.00299 * 358.93309 * 13 11 8 15 15 C 1.37884 * 119.99942 * 178.64868 * 13 11 8 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.53325 * 108.38442 * 308.87617 * 11 8 6 22 22 C 1.50623 * 117.75536 * 180.23618 * 5 4 3 23 23 H 1.09003 * 109.47188 * 90.00337 * 1 2 3 24 24 H 1.08998 * 109.46790 * 209.99432 * 1 2 3 25 25 H 1.08997 * 109.47784 * 329.99741 * 1 2 3 26 26 H 1.08003 * 120.10920 * 359.88565 * 3 2 1 27 27 H 1.08002 * 119.73039 * 180.02562 * 4 3 2 28 28 H 1.07996 * 119.72706 * 359.95692 * 7 2 1 29 29 H 1.08996 * 109.47149 * 181.10634 * 9 8 6 30 30 H 1.09006 * 109.46721 * 301.09557 * 9 8 6 31 31 H 1.08995 * 109.47603 * 61.09370 * 9 8 6 32 32 H 1.08997 * 109.47080 * 298.90474 * 10 8 6 33 33 H 1.08993 * 109.47135 * 58.90810 * 10 8 6 34 34 H 1.09003 * 109.46731 * 178.90585 * 10 8 6 35 35 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 36 36 H 1.09004 * 109.67707 * 189.59087 * 21 11 8 37 37 H 1.08993 * 109.68710 * 310.10503 * 21 11 8 38 38 H 1.08997 * 109.25445 * 77.44794 * 22 5 4 39 39 H 1.09003 * 109.22422 * 317.99788 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1961 0.0000 4 6 3.5799 1.1880 0.0020 5 6 4.2789 -0.0126 0.0033 6 6 3.5881 -1.2035 -0.0012 7 6 2.1991 -1.1930 -0.0005 8 6 4.2796 -2.5416 -0.0156 9 6 4.2251 -3.1227 -1.4300 10 6 3.5621 -3.4904 0.9467 11 6 5.7382 -2.3970 0.4136 12 1 5.7862 -2.1348 1.4705 13 6 6.4673 -3.6949 0.1790 14 1 5.9378 -4.5473 -0.2201 15 6 7.8119 -3.7923 0.4685 16 7 8.4568 -2.7543 0.9545 17 14 8.7174 -5.3987 0.1706 18 1 9.2676 -5.4084 -1.2087 19 1 9.8282 -5.5294 1.1474 20 1 7.7764 -6.5355 0.3360 21 6 6.3807 -1.2850 -0.4240 22 6 5.7837 0.0518 0.0110 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3634 0.8899 0.5138 26 1 1.6644 2.1335 -0.0019 27 1 4.1211 2.1227 0.0024 28 1 1.6566 -2.1269 -0.0002 29 1 4.7074 -4.1001 -1.4400 30 1 3.1853 -3.2274 -1.7399 31 1 4.7436 -2.4545 -2.1175 32 1 3.6070 -3.0850 1.9575 33 1 2.5206 -3.5962 0.6436 34 1 4.0479 -4.4660 0.9246 35 1 9.4026 -2.8229 1.1585 36 1 7.4581 -1.2770 -0.2587 37 1 6.1727 -1.4543 -1.4804 38 1 6.1282 0.2888 1.0176 39 1 6.1130 0.8326 -0.6746 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260196009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:00 Heat of formation + Delta-G solvation = -4.147072 kcal Electronic energy + Delta-G solvation = -18195.264763 eV Core-core repulsion = 15680.256886 eV Total energy + Delta-G solvation = -2515.007877 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.85704 -36.65020 -33.53096 -32.71800 -30.61757 -29.51031 -26.99232 -26.38969 -25.44992 -24.05067 -21.82349 -20.96815 -20.04021 -17.50796 -16.14928 -15.42043 -15.18694 -14.39504 -14.20689 -13.75967 -13.51120 -13.26245 -12.78098 -12.72999 -12.41291 -12.22820 -11.97345 -11.70293 -11.32982 -11.16066 -10.98704 -10.86144 -10.76465 -10.51426 -10.44063 -10.28011 -10.13621 -9.78354 -9.41245 -8.82593 -8.55673 -8.29491 -8.13730 -7.78557 -5.94768 -3.99695 1.87041 1.93215 3.31767 3.39150 3.41455 4.24519 4.45930 5.18944 5.20665 5.34643 5.40940 5.52925 5.59680 5.73023 5.87496 5.95028 5.97886 6.02160 6.04506 6.17136 6.34449 6.40568 6.44105 6.50163 6.63526 6.72122 6.75993 6.82854 6.91482 6.99137 7.03535 7.15466 7.18070 7.26156 7.35779 7.57175 7.63284 7.79976 8.04355 8.16488 8.50754 9.02482 9.63785 11.10862 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.037048 B = 0.007066 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.598885 B = 3961.723767 C = 4462.054010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.106 4.106 3 C -0.134 4.134 4 C -0.127 4.127 5 C -0.068 4.068 6 C -0.045 4.045 7 C -0.122 4.122 8 C -0.023 4.023 9 C -0.123 4.123 10 C -0.127 4.127 11 C 0.064 3.936 12 H 0.027 0.973 13 C -0.503 4.503 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.886 3.114 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.115 4.115 22 C -0.082 4.082 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.064 0.936 35 H 0.258 0.742 36 H 0.097 0.903 37 H 0.036 0.964 38 H 0.067 0.933 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.755 4.930 -2.108 12.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.106 4.106 3 C -0.152 4.152 4 C -0.145 4.145 5 C -0.068 4.068 6 C -0.045 4.045 7 C -0.140 4.140 8 C -0.023 4.023 9 C -0.180 4.180 10 C -0.184 4.184 11 C 0.046 3.954 12 H 0.045 0.955 13 C -0.541 4.541 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.714 3.286 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.153 4.153 22 C -0.119 4.119 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.580 4.976 -2.041 11.868 hybrid contribution 0.554 -0.665 -0.120 0.874 sum -10.026 4.311 -2.161 11.125 Atomic orbital electron populations 1.20697 0.92031 1.02043 1.01604 1.19706 0.95352 0.93462 1.02097 1.20759 0.94152 0.96900 1.03429 1.21127 0.94016 0.97511 1.01833 1.19926 0.96652 0.91997 0.98260 1.19940 0.92741 0.95385 0.96411 1.21104 0.94077 0.97013 1.01842 1.19564 0.97919 0.89318 0.95500 1.21830 0.98727 1.01844 0.95618 1.21831 0.97822 1.00227 0.98559 1.18651 0.87194 0.94317 0.95254 0.95523 1.21243 0.93890 0.96935 1.42069 0.92199 1.24953 0.97729 0.96052 0.95322 1.69880 1.09436 1.29159 1.44511 0.86691 0.79595 0.84411 0.77870 1.20845 1.21411 1.20010 1.21717 1.03651 0.91885 0.98065 1.20604 0.89860 1.00408 1.01003 0.91877 0.92026 0.92188 0.87137 0.86946 0.86577 0.91292 0.95270 0.93159 0.93607 0.94565 0.91720 0.93158 0.88453 0.94488 0.91464 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.02 36.00 0.36 -0.88 16 2 C -0.11 -1.62 5.87 -104.72 -0.61 -2.23 16 3 C -0.13 -2.04 9.71 -39.68 -0.39 -2.43 16 4 C -0.13 -2.11 9.61 -39.44 -0.38 -2.49 16 5 C -0.07 -1.31 5.74 -104.62 -0.60 -1.91 16 6 C -0.04 -0.87 4.71 -104.61 -0.49 -1.36 16 7 C -0.12 -2.09 8.55 -39.45 -0.34 -2.42 16 8 C -0.02 -0.47 0.41 -155.83 -0.06 -0.54 16 9 C -0.12 -2.41 7.80 37.16 0.29 -2.12 16 10 C -0.13 -2.43 7.84 37.16 0.29 -2.13 16 11 C 0.06 1.55 1.35 -91.74 -0.12 1.42 16 12 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 13 C -0.50 -13.10 7.17 -34.44 -0.25 -13.34 16 14 H 0.06 1.53 5.65 -52.49 -0.30 1.23 16 15 C 0.06 1.61 5.27 -17.82 -0.09 1.52 16 16 N -0.89 -24.85 11.31 55.43 0.63 -24.22 16 17 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.12 -2.68 5.09 -26.70 -0.14 -2.82 16 22 C -0.08 -1.65 5.67 -28.06 -0.16 -1.81 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 27 H 0.11 1.64 8.05 -52.49 -0.42 1.22 16 28 H 0.12 1.83 6.32 -52.49 -0.33 1.49 16 29 H 0.07 1.39 6.10 -51.93 -0.32 1.08 16 30 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 31 H 0.05 1.01 6.43 -51.93 -0.33 0.67 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.59 6.35 -51.93 -0.33 0.26 16 34 H 0.06 1.28 7.20 -51.93 -0.37 0.90 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 36 H 0.10 2.53 5.91 -51.93 -0.31 2.22 16 37 H 0.04 0.85 6.26 -51.93 -0.32 0.52 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 LS Contribution 296.45 15.07 4.47 4.47 Total: -1.00 -27.33 296.45 -8.58 -35.91 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.96 Total: 1.53 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: -2.69 Total: -33.54 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.63 Total: -24.22 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.33 -8.58 -35.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260196009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.766 kcal (2) G-P(sol) polarization free energy of solvation -27.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds