Wall clock time and date at job start Mon Mar 30 2020 07:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38275 * 120.11460 * 2 1 4 4 C 1.37923 * 119.77649 * 179.90323 * 3 2 1 5 5 C 1.38920 * 120.54457 * 0.03589 * 4 3 2 6 6 C 1.37668 * 119.67859 * 0.18028 * 5 4 3 7 7 C 1.37926 * 120.11855 * 180.02562 * 2 1 3 8 8 C 1.50630 * 122.56062 * 179.30215 * 6 5 4 9 9 C 1.53004 * 109.26150 * 257.52720 * 8 6 5 10 10 C 1.53001 * 109.24824 * 138.09360 * 8 6 5 11 11 C 1.52733 * 110.58348 * 17.81102 * 8 6 5 12 12 H 1.09000 * 109.71323 * 68.61764 * 11 8 6 13 13 C 1.50702 * 109.68081 * 189.15273 * 11 8 6 14 14 H 1.08002 * 120.00299 * 358.93309 * 13 11 8 15 15 C 1.37884 * 119.99942 * 178.64868 * 13 11 8 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.53325 * 108.38442 * 308.87617 * 11 8 6 22 22 C 1.50623 * 117.75536 * 180.23618 * 5 4 3 23 23 H 1.09003 * 109.47188 * 90.00337 * 1 2 3 24 24 H 1.08998 * 109.46790 * 209.99432 * 1 2 3 25 25 H 1.08997 * 109.47784 * 329.99741 * 1 2 3 26 26 H 1.08003 * 120.10920 * 359.88565 * 3 2 1 27 27 H 1.08002 * 119.73039 * 180.02562 * 4 3 2 28 28 H 1.07996 * 119.72706 * 359.95692 * 7 2 1 29 29 H 1.08996 * 109.47149 * 181.10634 * 9 8 6 30 30 H 1.09006 * 109.46721 * 301.09557 * 9 8 6 31 31 H 1.08995 * 109.47603 * 61.09370 * 9 8 6 32 32 H 1.08997 * 109.47080 * 298.90474 * 10 8 6 33 33 H 1.08993 * 109.47135 * 58.90810 * 10 8 6 34 34 H 1.09003 * 109.46731 * 178.90585 * 10 8 6 35 35 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 36 36 H 1.09004 * 109.67707 * 189.59087 * 21 11 8 37 37 H 1.08993 * 109.68710 * 310.10503 * 21 11 8 38 38 H 1.08997 * 109.25445 * 77.44794 * 22 5 4 39 39 H 1.09003 * 109.22422 * 317.99788 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1961 0.0000 4 6 3.5799 1.1880 0.0020 5 6 4.2789 -0.0126 0.0033 6 6 3.5881 -1.2035 -0.0012 7 6 2.1991 -1.1930 -0.0005 8 6 4.2796 -2.5416 -0.0156 9 6 4.2251 -3.1227 -1.4300 10 6 3.5621 -3.4904 0.9467 11 6 5.7382 -2.3970 0.4136 12 1 5.7862 -2.1348 1.4705 13 6 6.4673 -3.6949 0.1790 14 1 5.9378 -4.5473 -0.2201 15 6 7.8119 -3.7923 0.4685 16 7 8.4568 -2.7543 0.9545 17 14 8.7174 -5.3987 0.1706 18 1 9.2676 -5.4084 -1.2087 19 1 9.8282 -5.5294 1.1474 20 1 7.7764 -6.5355 0.3360 21 6 6.3807 -1.2850 -0.4240 22 6 5.7837 0.0518 0.0110 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3634 0.8899 0.5138 26 1 1.6644 2.1335 -0.0019 27 1 4.1211 2.1227 0.0024 28 1 1.6566 -2.1269 -0.0002 29 1 4.7074 -4.1001 -1.4400 30 1 3.1853 -3.2274 -1.7399 31 1 4.7436 -2.4545 -2.1175 32 1 3.6070 -3.0850 1.9575 33 1 2.5206 -3.5962 0.6436 34 1 4.0479 -4.4660 0.9246 35 1 9.4026 -2.8229 1.1585 36 1 7.4581 -1.2770 -0.2587 37 1 6.1727 -1.4543 -1.4804 38 1 6.1282 0.2888 1.0176 39 1 6.1130 0.8326 -0.6746 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260196009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:59 Heat of formation + Delta-G solvation = -16.052769 kcal Electronic energy + Delta-G solvation = -18195.781033 eV Core-core repulsion = 15680.256886 eV Total energy + Delta-G solvation = -2515.524147 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30385 -38.14615 -35.02190 -34.58099 -32.11401 -30.90213 -28.58223 -27.96765 -26.96255 -25.72382 -23.25289 -22.54651 -21.55997 -19.13743 -18.09781 -16.85882 -16.74974 -16.02590 -15.71373 -15.26130 -14.77476 -14.70492 -14.34655 -14.31300 -13.89721 -13.61269 -13.37335 -13.07211 -12.88234 -12.76666 -12.59375 -12.51666 -12.29059 -12.22289 -12.09036 -11.89336 -11.66013 -11.57599 -11.24307 -10.59480 -10.40546 -10.27881 -9.47795 -9.12098 -8.01078 -6.12101 0.58106 0.63470 1.42469 1.44044 1.52711 2.47227 2.94636 3.26020 3.95023 3.97918 4.13902 4.21901 4.32369 4.42242 4.44735 4.58742 4.68008 4.69860 4.78145 4.88305 4.92787 4.93798 5.00808 5.07581 5.12487 5.14554 5.31881 5.35217 5.42131 5.46236 5.50158 5.53981 5.56862 5.65368 5.77222 5.82223 6.05440 6.10114 6.22170 6.29369 6.50142 6.98179 7.54152 9.03503 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.037048 B = 0.007066 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.598885 B = 3961.723767 C = 4462.054010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.101 4.101 3 C -0.131 4.131 4 C -0.129 4.129 5 C -0.099 4.099 6 C -0.067 4.067 7 C -0.130 4.130 8 C -0.023 4.023 9 C -0.116 4.116 10 C -0.122 4.122 11 C 0.066 3.934 12 H -0.016 1.016 13 C -0.510 4.510 14 H 0.062 0.938 15 C 0.009 3.991 16 N -0.920 5.920 17 Si 0.946 3.054 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.267 1.267 21 C -0.109 4.109 22 C -0.074 4.074 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.145 0.855 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.257 0.743 36 H 0.064 0.936 37 H 0.034 0.966 38 H 0.051 0.949 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.512 5.403 -2.844 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.101 4.101 3 C -0.149 4.149 4 C -0.147 4.147 5 C -0.099 4.099 6 C -0.067 4.067 7 C -0.148 4.148 8 C -0.023 4.023 9 C -0.173 4.173 10 C -0.179 4.179 11 C 0.048 3.952 12 H 0.002 0.998 13 C -0.549 4.549 14 H 0.081 0.919 15 C -0.188 4.188 16 N -0.561 5.561 17 Si 0.772 3.228 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.192 1.192 21 C -0.147 4.147 22 C -0.111 4.111 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.162 0.838 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.349 5.442 -2.782 14.681 hybrid contribution 1.352 -0.755 0.122 1.554 sum -11.996 4.686 -2.659 13.151 Atomic orbital electron populations 1.20771 0.89016 1.03460 1.02969 1.20175 0.97524 0.92682 0.99672 1.21173 0.93544 0.98470 1.01722 1.21333 0.95077 0.97114 1.01136 1.19903 0.95676 0.93417 1.00887 1.19901 0.94048 0.94436 0.98328 1.21240 0.92946 0.98583 1.02045 1.19445 0.95597 0.91069 0.96149 1.21737 1.00111 1.00615 0.94817 1.21767 0.99403 0.98942 0.97756 1.18533 0.90139 0.93731 0.92844 0.99762 1.21588 0.94186 0.97831 1.41250 0.91949 1.25696 0.98737 0.98933 0.95467 1.70035 1.09445 1.30919 1.45674 0.85740 0.78351 0.81042 0.77625 1.20443 1.21551 1.19166 1.21521 1.01694 0.93812 0.97720 1.20432 0.91426 0.98863 1.00339 0.90370 0.91173 0.90349 0.83769 0.85182 0.85279 0.92547 0.92552 0.94315 0.94685 0.91398 0.93044 0.93430 0.91775 0.94752 0.93056 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 10.02 71.23 0.71 -1.22 16 2 C -0.10 -2.68 5.87 -19.93 -0.12 -2.80 16 3 C -0.13 -3.49 9.71 22.20 0.22 -3.27 16 4 C -0.13 -4.02 9.61 22.36 0.21 -3.80 16 5 C -0.10 -3.77 5.74 -19.86 -0.11 -3.88 16 6 C -0.07 -2.55 4.71 -19.86 -0.09 -2.64 16 7 C -0.13 -4.10 8.55 22.36 0.19 -3.91 16 8 C -0.02 -0.93 0.41 -53.04 -0.02 -0.95 16 9 C -0.12 -4.47 7.80 71.98 0.56 -3.91 16 10 C -0.12 -4.59 7.84 71.98 0.56 -4.03 16 11 C 0.07 3.32 1.35 -11.52 -0.02 3.30 16 12 H -0.02 -0.91 8.09 -2.39 -0.02 -0.93 16 13 C -0.51 -27.44 7.17 25.60 0.18 -27.26 16 14 H 0.06 3.25 5.65 -2.91 -0.02 3.24 16 15 C 0.01 0.51 5.27 84.66 0.45 0.96 16 16 N -0.92 -53.62 11.31 21.45 0.24 -53.38 16 17 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 C -0.11 -5.34 5.09 30.62 0.16 -5.18 16 22 C -0.07 -3.06 5.67 29.74 0.17 -2.89 16 23 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 25 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 26 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 27 H 0.13 3.49 8.05 -2.91 -0.02 3.47 16 28 H 0.13 3.62 6.32 -2.91 -0.02 3.60 16 29 H 0.06 2.27 6.10 -2.39 -0.01 2.26 16 30 H 0.06 1.83 8.05 -2.38 -0.02 1.81 16 31 H 0.04 1.55 6.43 -2.39 -0.02 1.53 16 32 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 33 H 0.07 2.09 6.35 -2.39 -0.02 2.08 16 34 H 0.05 2.03 7.20 -2.39 -0.02 2.02 16 35 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 36 H 0.06 3.53 5.91 -2.39 -0.01 3.52 16 37 H 0.03 1.64 6.26 -2.39 -0.01 1.62 16 38 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.07 2.57 8.12 -2.39 -0.02 2.55 16 Total: -1.00 -60.93 296.45 6.34 -54.59 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.02 Total: 14.50 kcal Atomic # 6 Polarization: -64.53 SS G_CDS: 3.05 Total: -61.48 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.24 Total: -53.38 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -60.93 6.34 -54.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260196009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.537 kcal (2) G-P(sol) polarization free energy of solvation -60.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds