Wall clock time and date at job start Mon Mar 30 2020 07:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38264 * 120.11091 * 2 1 4 4 C 1.37938 * 119.77074 * 180.08241 * 3 2 1 5 5 C 1.38915 * 120.54166 * 0.02836 * 4 3 2 6 6 C 1.37656 * 119.68106 * 359.75273 * 5 4 3 7 7 C 1.37929 * 120.11191 * 179.97438 * 2 1 3 8 8 C 1.50639 * 122.56036 * 180.47008 * 6 5 4 9 9 C 1.52997 * 109.25310 * 102.35663 * 8 6 5 10 10 C 1.52999 * 109.25370 * 221.82671 * 8 6 5 11 11 C 1.52735 * 110.57460 * 342.07354 * 8 6 5 12 12 H 1.08999 * 109.68324 * 291.44152 * 11 8 6 13 13 C 1.50699 * 109.68073 * 170.88706 * 11 8 6 14 14 H 1.08003 * 119.99943 * 0.02562 * 13 11 8 15 15 C 1.37881 * 119.99711 * 179.97438 * 13 11 8 16 16 N 1.31513 * 120.00323 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99814 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47084 * 59.99785 * 17 15 13 19 19 H 1.48495 * 109.47350 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47052 * 300.00088 * 17 15 13 21 21 C 1.53324 * 108.38152 * 51.16662 * 11 8 6 22 22 C 1.50631 * 117.75144 * 179.37563 * 5 4 3 23 23 H 1.09001 * 109.47493 * 269.99574 * 1 2 3 24 24 H 1.09004 * 109.47182 * 30.00038 * 1 2 3 25 25 H 1.09004 * 109.47114 * 149.99979 * 1 2 3 26 26 H 1.07996 * 120.11248 * 0.10844 * 3 2 1 27 27 H 1.08000 * 119.72438 * 180.30802 * 4 3 2 28 28 H 1.07993 * 119.73566 * 0.02562 * 7 2 1 29 29 H 1.08997 * 109.47199 * 59.99956 * 9 8 6 30 30 H 1.09003 * 109.47171 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47091 * 299.99544 * 9 8 6 32 32 H 1.09000 * 109.46704 * 60.00178 * 10 8 6 33 33 H 1.08998 * 109.46843 * 179.97438 * 10 8 6 34 34 H 1.08991 * 109.47304 * 300.00251 * 10 8 6 35 35 H 0.97000 * 119.99930 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.68313 * 49.87854 * 21 11 8 37 37 H 1.09001 * 109.67838 * 170.39129 * 21 11 8 38 38 H 1.09002 * 109.24861 * 282.86233 * 22 5 4 39 39 H 1.09003 * 109.24964 * 42.28396 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1961 0.0000 4 6 3.5800 1.1879 -0.0017 5 6 4.2788 -0.0127 -0.0041 6 6 3.5881 -1.2034 0.0005 7 6 2.1990 -1.1932 0.0005 8 6 4.2796 -2.5417 0.0088 9 6 4.2335 -3.1247 1.4226 10 6 3.5569 -3.4889 -0.9512 11 6 5.7356 -2.3964 -0.4290 12 1 5.7766 -2.1316 -1.4855 13 6 6.4659 -3.6948 -0.2017 14 1 5.9427 -4.5430 0.2145 15 6 7.8019 -3.8002 -0.5262 16 7 8.4386 -2.7678 -1.0344 17 14 8.7071 -5.4099 -0.2451 18 1 8.0596 -6.4866 -1.0367 19 1 10.1218 -5.2634 -0.6721 20 1 8.6596 -5.7592 1.1974 21 6 6.3833 -1.2863 0.4071 22 6 5.7837 0.0517 -0.0204 23 1 -0.3634 -0.0001 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6644 2.1334 0.0018 27 1 4.1211 2.1226 0.0033 28 1 1.6566 -2.1270 0.0005 29 1 3.1954 -3.2479 1.7311 30 1 4.7334 -4.0932 1.4327 31 1 4.7394 -2.4480 2.1113 32 1 3.5795 -3.0723 -1.9582 33 1 4.0548 -4.4585 -0.9483 34 1 2.5221 -3.6104 -0.6314 35 1 9.3786 -2.8419 -1.2623 36 1 6.1814 -1.4578 1.4644 37 1 7.4597 -1.2782 0.2356 38 1 6.1222 0.2916 -1.0283 39 1 6.1175 0.8306 0.6652 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260196013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:03 Heat of formation + Delta-G solvation = -4.363122 kcal Electronic energy + Delta-G solvation = -18192.717770 eV Core-core repulsion = 15677.700524 eV Total energy + Delta-G solvation = -2515.017246 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.85758 -36.64985 -33.53092 -32.70936 -30.62687 -29.51036 -26.99468 -26.39104 -25.44791 -24.05037 -21.82383 -20.96943 -20.04193 -17.50627 -16.14962 -15.42312 -15.18409 -14.39895 -14.20462 -13.76127 -13.50994 -13.25872 -12.78532 -12.72951 -12.41123 -12.22928 -11.96946 -11.70427 -11.32961 -11.16498 -10.98399 -10.85360 -10.76941 -10.53040 -10.43925 -10.28283 -10.13920 -9.78451 -9.41441 -8.81780 -8.56471 -8.29630 -8.13791 -7.78685 -5.94860 -3.99482 1.86976 1.93177 3.33275 3.38425 3.40687 4.24469 4.46090 5.18890 5.20656 5.34974 5.41027 5.52762 5.59542 5.73017 5.87412 5.94961 5.97681 6.02094 6.04463 6.17192 6.34056 6.40391 6.44345 6.50001 6.63318 6.72000 6.75888 6.82578 6.91369 6.99135 7.03295 7.15561 7.18058 7.26008 7.35225 7.57075 7.63169 7.79660 8.04349 8.14825 8.50533 9.02601 9.63930 11.11297 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.036987 B = 0.007062 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.846068 B = 3964.138163 C = 4461.582233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.106 4.106 3 C -0.134 4.134 4 C -0.127 4.127 5 C -0.068 4.068 6 C -0.045 4.045 7 C -0.122 4.122 8 C -0.023 4.023 9 C -0.124 4.124 10 C -0.127 4.127 11 C 0.065 3.935 12 H 0.027 0.973 13 C -0.505 4.505 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.886 3.114 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.278 1.278 21 C -0.114 4.114 22 C -0.082 4.082 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.259 0.741 36 H 0.037 0.963 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.719 4.956 2.236 12.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.106 4.106 3 C -0.152 4.152 4 C -0.145 4.145 5 C -0.068 4.068 6 C -0.045 4.045 7 C -0.140 4.140 8 C -0.023 4.023 9 C -0.181 4.181 10 C -0.184 4.184 11 C 0.046 3.954 12 H 0.045 0.955 13 C -0.543 4.543 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.714 3.286 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.204 1.204 21 C -0.152 4.152 22 C -0.119 4.119 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.540 5.005 2.166 11.867 hybrid contribution 0.545 -0.679 0.100 0.876 sum -9.995 4.326 2.265 11.124 Atomic orbital electron populations 1.20700 0.92029 1.02045 1.01604 1.19707 0.95355 0.93463 1.02086 1.20759 0.94150 0.96901 1.03433 1.21128 0.94017 0.97507 1.01828 1.19916 0.96632 0.92002 0.98288 1.19943 0.92748 0.95388 0.96399 1.21105 0.94074 0.97014 1.01835 1.19567 0.97911 0.89318 0.95511 1.21834 0.98778 1.01858 0.95600 1.21828 0.97835 1.00256 0.98517 1.18644 0.87192 0.94285 0.95247 0.95462 1.21202 0.94575 0.97093 1.41402 0.92236 1.24951 0.97716 0.96049 0.95286 1.69879 1.10148 1.29430 1.43525 0.86758 0.78830 0.84462 0.78528 1.20409 1.21458 1.20388 1.21696 1.03388 0.91939 0.98144 1.20603 0.89880 1.00384 1.01018 0.91876 0.92187 0.92024 0.87133 0.86945 0.86577 0.95256 0.91214 0.93212 0.93633 0.91670 0.94574 0.93095 0.94461 0.88717 0.91448 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.02 36.01 0.36 -0.88 16 2 C -0.11 -1.62 5.87 -104.72 -0.61 -2.23 16 3 C -0.13 -2.04 9.71 -39.68 -0.39 -2.43 16 4 C -0.13 -2.11 9.61 -39.44 -0.38 -2.49 16 5 C -0.07 -1.31 5.74 -104.62 -0.60 -1.91 16 6 C -0.04 -0.87 4.71 -104.61 -0.49 -1.36 16 7 C -0.12 -2.08 8.58 -39.44 -0.34 -2.42 16 8 C -0.02 -0.47 0.41 -155.83 -0.06 -0.54 16 9 C -0.12 -2.42 7.80 37.16 0.29 -2.13 16 10 C -0.13 -2.43 7.82 37.16 0.29 -2.14 16 11 C 0.06 1.56 1.33 -91.74 -0.12 1.44 16 12 H 0.03 0.74 8.09 -51.93 -0.42 0.32 16 13 C -0.50 -13.13 7.13 -34.44 -0.25 -13.38 16 14 H 0.06 1.52 5.65 -52.48 -0.30 1.22 16 15 C 0.06 1.63 5.28 -17.82 -0.09 1.54 16 16 N -0.89 -24.88 11.40 55.43 0.63 -24.25 16 17 Si 0.89 20.88 29.54 -169.99 -5.02 15.85 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.11 -2.64 5.10 -26.70 -0.14 -2.78 16 22 C -0.08 -1.65 5.67 -28.06 -0.16 -1.80 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 25 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 26 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.11 1.64 8.05 -52.49 -0.42 1.22 16 28 H 0.12 1.83 6.33 -52.49 -0.33 1.49 16 29 H 0.03 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.07 1.41 6.04 -51.93 -0.31 1.10 16 31 H 0.05 0.99 6.47 -51.93 -0.34 0.66 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.29 7.19 -51.93 -0.37 0.92 16 34 H 0.04 0.59 6.40 -51.93 -0.33 0.26 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.04 0.85 6.27 -51.93 -0.33 0.52 16 37 H 0.09 2.45 6.02 -51.93 -0.31 2.14 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.05 0.96 8.13 -51.93 -0.42 0.53 16 LS Contribution 296.70 15.07 4.47 4.47 Total: -1.00 -27.33 296.70 -8.58 -35.91 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.97 Total: 1.52 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: -2.69 Total: -33.51 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.63 Total: -24.25 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.33 -8.58 -35.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260196013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.546 kcal (2) G-P(sol) polarization free energy of solvation -27.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds