Wall clock time and date at job start Mon Mar 30 2020 07:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38264 * 120.11091 * 2 1 4 4 C 1.37938 * 119.77074 * 180.08241 * 3 2 1 5 5 C 1.38915 * 120.54166 * 0.02836 * 4 3 2 6 6 C 1.37656 * 119.68106 * 359.75273 * 5 4 3 7 7 C 1.37929 * 120.11191 * 179.97438 * 2 1 3 8 8 C 1.50639 * 122.56036 * 180.47008 * 6 5 4 9 9 C 1.52997 * 109.25310 * 102.35663 * 8 6 5 10 10 C 1.52999 * 109.25370 * 221.82671 * 8 6 5 11 11 C 1.52735 * 110.57460 * 342.07354 * 8 6 5 12 12 H 1.08999 * 109.68324 * 291.44152 * 11 8 6 13 13 C 1.50699 * 109.68073 * 170.88706 * 11 8 6 14 14 H 1.08003 * 119.99943 * 0.02562 * 13 11 8 15 15 C 1.37881 * 119.99711 * 179.97438 * 13 11 8 16 16 N 1.31513 * 120.00323 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99814 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47084 * 59.99785 * 17 15 13 19 19 H 1.48495 * 109.47350 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47052 * 300.00088 * 17 15 13 21 21 C 1.53324 * 108.38152 * 51.16662 * 11 8 6 22 22 C 1.50631 * 117.75144 * 179.37563 * 5 4 3 23 23 H 1.09001 * 109.47493 * 269.99574 * 1 2 3 24 24 H 1.09004 * 109.47182 * 30.00038 * 1 2 3 25 25 H 1.09004 * 109.47114 * 149.99979 * 1 2 3 26 26 H 1.07996 * 120.11248 * 0.10844 * 3 2 1 27 27 H 1.08000 * 119.72438 * 180.30802 * 4 3 2 28 28 H 1.07993 * 119.73566 * 0.02562 * 7 2 1 29 29 H 1.08997 * 109.47199 * 59.99956 * 9 8 6 30 30 H 1.09003 * 109.47171 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47091 * 299.99544 * 9 8 6 32 32 H 1.09000 * 109.46704 * 60.00178 * 10 8 6 33 33 H 1.08998 * 109.46843 * 179.97438 * 10 8 6 34 34 H 1.08991 * 109.47304 * 300.00251 * 10 8 6 35 35 H 0.97000 * 119.99930 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.68313 * 49.87854 * 21 11 8 37 37 H 1.09001 * 109.67838 * 170.39129 * 21 11 8 38 38 H 1.09002 * 109.24861 * 282.86233 * 22 5 4 39 39 H 1.09003 * 109.24964 * 42.28396 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1961 0.0000 4 6 3.5800 1.1879 -0.0017 5 6 4.2788 -0.0127 -0.0041 6 6 3.5881 -1.2034 0.0005 7 6 2.1990 -1.1932 0.0005 8 6 4.2796 -2.5417 0.0088 9 6 4.2335 -3.1247 1.4226 10 6 3.5569 -3.4889 -0.9512 11 6 5.7356 -2.3964 -0.4290 12 1 5.7766 -2.1316 -1.4855 13 6 6.4659 -3.6948 -0.2017 14 1 5.9427 -4.5430 0.2145 15 6 7.8019 -3.8002 -0.5262 16 7 8.4386 -2.7678 -1.0344 17 14 8.7071 -5.4099 -0.2451 18 1 8.0596 -6.4866 -1.0367 19 1 10.1218 -5.2634 -0.6721 20 1 8.6596 -5.7592 1.1974 21 6 6.3833 -1.2863 0.4071 22 6 5.7837 0.0517 -0.0204 23 1 -0.3634 -0.0001 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6644 2.1334 0.0018 27 1 4.1211 2.1226 0.0033 28 1 1.6566 -2.1270 0.0005 29 1 3.1954 -3.2479 1.7311 30 1 4.7334 -4.0932 1.4327 31 1 4.7394 -2.4480 2.1113 32 1 3.5795 -3.0723 -1.9582 33 1 4.0548 -4.4585 -0.9483 34 1 2.5221 -3.6104 -0.6314 35 1 9.3786 -2.8419 -1.2623 36 1 6.1814 -1.4578 1.4644 37 1 7.4597 -1.2782 0.2356 38 1 6.1222 0.2916 -1.0283 39 1 6.1175 0.8306 0.6652 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260196013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:02 Heat of formation + Delta-G solvation = -16.272025 kcal Electronic energy + Delta-G solvation = -18193.234179 eV Core-core repulsion = 15677.700524 eV Total energy + Delta-G solvation = -2515.533655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30383 -38.14508 -35.01887 -34.57678 -32.12249 -30.90161 -28.58266 -27.96863 -26.96101 -25.72356 -23.25267 -22.54794 -21.56039 -19.13491 -18.09861 -16.85854 -16.74722 -16.03120 -15.70901 -15.26225 -14.77165 -14.70479 -14.34186 -14.31199 -13.89843 -13.61435 -13.37536 -13.08190 -12.85317 -12.76670 -12.60998 -12.51562 -12.30545 -12.23257 -12.07712 -11.89319 -11.66233 -11.58108 -11.24386 -10.58277 -10.41224 -10.28295 -9.47753 -9.12174 -8.01339 -6.11964 0.58104 0.63475 1.43939 1.44239 1.51182 2.47380 2.94639 3.26303 3.94998 3.97797 4.13927 4.21801 4.32302 4.42229 4.44610 4.58626 4.68201 4.69586 4.78063 4.88152 4.92779 4.94097 5.00677 5.07493 5.12274 5.14538 5.31848 5.34972 5.41796 5.46202 5.50255 5.53672 5.56712 5.65489 5.77220 5.82211 6.05392 6.09869 6.20772 6.29367 6.49901 6.98292 7.54251 9.03715 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.036987 B = 0.007062 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.846068 B = 3964.138163 C = 4461.582233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.101 4.101 3 C -0.131 4.131 4 C -0.129 4.129 5 C -0.099 4.099 6 C -0.067 4.067 7 C -0.130 4.130 8 C -0.023 4.023 9 C -0.116 4.116 10 C -0.122 4.122 11 C 0.066 3.934 12 H -0.016 1.016 13 C -0.512 4.512 14 H 0.063 0.937 15 C 0.010 3.990 16 N -0.920 5.920 17 Si 0.945 3.055 18 H -0.273 1.273 19 H -0.290 1.290 20 H -0.272 1.272 21 C -0.108 4.108 22 C -0.074 4.074 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.145 0.855 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.257 0.743 36 H 0.035 0.965 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.470 5.424 3.003 14.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.101 4.101 3 C -0.149 4.149 4 C -0.147 4.147 5 C -0.099 4.099 6 C -0.067 4.067 7 C -0.148 4.148 8 C -0.023 4.023 9 C -0.173 4.173 10 C -0.179 4.179 11 C 0.048 3.952 12 H 0.003 0.997 13 C -0.550 4.550 14 H 0.081 0.919 15 C -0.188 4.188 16 N -0.561 5.561 17 Si 0.772 3.228 18 H -0.198 1.198 19 H -0.216 1.216 20 H -0.197 1.197 21 C -0.146 4.146 22 C -0.111 4.111 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.162 0.838 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.303 5.466 2.937 14.679 hybrid contribution 1.339 -0.768 -0.151 1.551 sum -11.964 4.698 2.786 13.152 Atomic orbital electron populations 1.20774 0.89019 1.03456 1.02970 1.20175 0.97525 0.92686 0.99670 1.21173 0.93545 0.98467 1.01725 1.21335 0.95075 0.97115 1.01129 1.19894 0.95662 0.93418 1.00904 1.19903 0.94052 0.94441 0.98322 1.21241 0.92946 0.98582 1.02038 1.19447 0.95597 0.91067 0.96150 1.21742 1.00162 1.00624 0.94801 1.21765 0.99381 0.98965 0.97757 1.18524 0.90133 0.93705 0.92838 0.99739 1.21560 0.94857 0.98008 1.40570 0.91920 1.25697 0.98730 0.98951 0.95418 1.70036 1.10131 1.31204 1.44722 0.85805 0.77446 0.80925 0.78627 1.19815 1.21576 1.19687 1.21500 1.01418 0.93859 0.97806 1.20432 0.91438 0.98843 1.00358 0.90364 0.90353 0.91179 0.83768 0.85172 0.85283 0.92526 0.92517 0.94316 0.94699 0.93034 0.91396 0.93422 0.94678 0.92063 0.93059 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 10.02 71.24 0.71 -1.22 16 2 C -0.10 -2.68 5.87 -19.93 -0.12 -2.80 16 3 C -0.13 -3.49 9.71 22.20 0.22 -3.27 16 4 C -0.13 -4.01 9.61 22.36 0.21 -3.80 16 5 C -0.10 -3.76 5.74 -19.86 -0.11 -3.87 16 6 C -0.07 -2.55 4.71 -19.86 -0.09 -2.64 16 7 C -0.13 -4.10 8.58 22.36 0.19 -3.90 16 8 C -0.02 -0.93 0.41 -53.04 -0.02 -0.95 16 9 C -0.12 -4.48 7.80 71.98 0.56 -3.92 16 10 C -0.12 -4.60 7.82 71.98 0.56 -4.03 16 11 C 0.07 3.34 1.33 -11.52 -0.02 3.32 16 12 H -0.02 -0.90 8.09 -2.39 -0.02 -0.92 16 13 C -0.51 -27.51 7.13 25.60 0.18 -27.33 16 14 H 0.06 3.26 5.65 -2.91 -0.02 3.24 16 15 C 0.01 0.54 5.28 84.66 0.45 0.98 16 16 N -0.92 -53.73 11.40 21.45 0.24 -53.49 16 17 Si 0.95 43.73 29.54 68.60 2.03 45.75 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.11 -5.25 5.10 30.61 0.16 -5.10 16 22 C -0.07 -3.06 5.67 29.74 0.17 -2.89 16 23 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.08 1.18 8.09 -2.38 -0.02 1.16 16 25 H 0.07 1.19 8.09 -2.38 -0.02 1.17 16 26 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 27 H 0.13 3.49 8.05 -2.91 -0.02 3.46 16 28 H 0.13 3.62 6.33 -2.91 -0.02 3.60 16 29 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 30 H 0.06 2.29 6.04 -2.39 -0.01 2.28 16 31 H 0.04 1.54 6.47 -2.39 -0.02 1.53 16 32 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.05 2.04 7.19 -2.39 -0.02 2.03 16 34 H 0.07 2.09 6.40 -2.39 -0.02 2.08 16 35 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.03 1.67 6.27 -2.39 -0.01 1.65 16 37 H 0.06 3.37 6.02 -2.39 -0.01 3.35 16 38 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.07 2.57 8.13 -2.39 -0.02 2.55 16 Total: -1.00 -60.97 296.70 6.35 -54.62 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 1.02 Total: 14.53 kcal Atomic # 6 Polarization: -64.48 SS G_CDS: 3.05 Total: -61.42 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.24 Total: -53.49 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -60.97 6.35 -54.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260196013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.347 kcal (2) G-P(sol) polarization free energy of solvation -60.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds