Wall clock time and date at job start Mon Mar 30 2020 07:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.21787 * 2 1 4 4 C 1.50634 * 109.25680 * 119.45329 * 2 1 3 5 5 C 1.38911 * 117.74376 * 317.76639 * 4 2 1 6 6 C 1.37938 * 120.54225 * 180.28608 * 5 4 2 7 7 C 1.38268 * 119.76886 * 0.09005 * 6 5 4 8 8 C 1.37933 * 119.77068 * 0.18321 * 7 6 5 9 9 C 1.37664 * 122.56625 * 137.99437 * 4 2 1 10 10 C 1.50625 * 122.56665 * 359.37353 * 9 4 2 11 11 C 1.52741 * 110.58835 * 17.71234 * 10 9 4 12 12 C 1.52734 * 109.25043 * 240.55364 * 2 1 3 13 13 H 1.09003 * 109.68644 * 308.34250 * 12 2 1 14 14 C 1.53000 * 109.68313 * 68.86445 * 12 2 1 15 15 C 1.50703 * 109.47184 * 185.00020 * 14 12 2 16 16 H 1.08000 * 119.99731 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99979 * 179.97438 * 15 14 12 18 18 N 1.31512 * 119.99956 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99700 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47389 * 89.99902 * 19 17 15 21 21 H 1.48507 * 109.46735 * 209.99577 * 19 17 15 22 22 H 1.48501 * 109.47288 * 329.99545 * 19 17 15 23 23 H 1.09006 * 109.47025 * 300.54310 * 1 2 3 24 24 H 1.08996 * 109.47289 * 60.54795 * 1 2 3 25 25 H 1.09000 * 109.46988 * 180.55183 * 1 2 3 26 26 H 1.09007 * 109.46985 * 179.45098 * 3 2 1 27 27 H 1.09000 * 109.47221 * 299.44850 * 3 2 1 28 28 H 1.08996 * 109.47239 * 59.46050 * 3 2 1 29 29 H 1.07993 * 119.73019 * 0.31149 * 5 4 2 30 30 H 1.07996 * 120.11309 * 180.11978 * 6 5 4 31 31 H 1.08002 * 120.10977 * 179.89752 * 7 6 5 32 32 H 1.08003 * 119.72685 * 179.64979 * 8 7 6 33 33 H 1.08998 * 109.25921 * 257.43071 * 10 9 4 34 34 H 1.08993 * 109.25413 * 137.99700 * 10 9 4 35 35 H 1.08997 * 109.68367 * 189.18436 * 11 10 9 36 36 H 1.09000 * 109.71205 * 68.64916 * 11 10 9 37 37 H 1.08997 * 109.46730 * 304.99494 * 14 12 2 38 38 H 1.08994 * 109.47617 * 64.99783 * 14 12 2 39 39 H 0.96998 * 119.99903 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4447 0.0000 4 6 2.0268 -0.6992 1.2383 5 6 1.3807 -0.4275 2.4376 6 6 1.7917 -1.0312 3.6077 7 6 2.8567 -1.9129 3.5880 8 6 3.5030 -2.1796 2.3990 9 6 3.0850 -1.5795 1.2181 10 6 3.8260 -1.9276 -0.0463 11 6 3.5511 -0.8901 -1.1330 12 6 2.0335 -0.7089 -1.2557 13 1 1.5535 -1.6835 -1.3446 14 6 1.7130 0.1379 -2.4890 15 6 2.1004 -0.6196 -3.7329 16 1 2.5324 -1.6061 -3.6518 17 6 1.9033 -0.0532 -4.9745 18 7 1.3768 1.1478 -5.0732 19 14 2.3829 -0.9925 -6.5162 20 1 1.2299 -1.8059 -6.9791 21 1 2.7701 -0.0320 -7.5806 22 1 3.5299 -1.8862 -6.2148 23 1 -0.3633 0.5223 0.8851 24 1 -0.3633 0.5053 -0.8948 25 1 -0.3633 -1.0276 0.0099 26 1 3.1236 1.4496 0.0098 27 1 1.6761 1.9542 -0.8949 28 1 1.6601 1.9597 0.8851 29 1 0.5495 0.2618 2.4539 30 1 1.2832 -0.8164 4.5359 31 1 3.1842 -2.3874 4.5012 32 1 4.3384 -2.8640 2.3854 33 1 3.5012 -2.9079 -0.3950 34 1 4.8958 -1.9566 0.1605 35 1 3.9574 -1.2370 -2.0830 36 1 4.0133 0.0588 -0.8607 37 1 0.6451 0.3545 -2.5134 38 1 2.2723 1.0722 -2.4437 39 1 1.2385 1.5464 -5.9466 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260214973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:46 Heat of formation + Delta-G solvation = -20.680209 kcal Electronic energy + Delta-G solvation = -18007.895520 eV Core-core repulsion = 15492.170712 eV Total energy + Delta-G solvation = -2515.724808 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.47558 -38.20477 -35.08681 -34.82224 -32.17840 -30.71339 -29.25518 -28.15237 -26.84319 -24.91135 -23.73959 -22.07534 -21.68617 -19.05898 -18.57289 -17.23993 -16.55214 -16.32079 -15.83595 -15.31521 -15.02270 -14.85406 -14.60317 -14.13583 -14.00662 -13.80120 -13.60823 -13.18083 -12.85419 -12.80145 -12.60108 -12.53761 -12.35141 -12.18908 -12.07264 -11.92564 -11.68875 -11.37281 -11.17786 -10.69310 -10.58897 -10.44180 -9.54514 -9.34621 -8.14487 -6.22343 0.57949 0.59063 1.40128 1.40422 1.51227 2.43282 2.95783 3.18930 3.78562 3.81984 4.00036 4.10031 4.19720 4.34900 4.40066 4.44687 4.55679 4.60927 4.69614 4.76770 4.81416 4.92193 4.93408 5.05907 5.13335 5.17115 5.21176 5.23811 5.32608 5.34090 5.39864 5.46319 5.53320 5.63807 5.71825 5.79219 5.89380 5.94940 5.98019 6.24875 6.36440 6.94102 7.45020 8.97136 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.036978 B = 0.006252 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.021259 B = 4477.134653 C = 4952.109819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.020 4.020 3 C -0.130 4.130 4 C -0.071 4.071 5 C -0.129 4.129 6 C -0.129 4.129 7 C -0.128 4.128 8 C -0.129 4.129 9 C -0.090 4.090 10 C -0.076 4.076 11 C -0.106 4.106 12 C -0.061 4.061 13 H 0.043 0.957 14 C 0.038 3.962 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.002 3.998 18 N -0.933 5.933 19 Si 0.955 3.045 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.264 1.264 23 H 0.074 0.926 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.129 0.871 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.136 0.864 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.054 0.946 37 H -0.007 1.007 38 H -0.001 1.001 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 -4.845 16.701 17.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.020 4.020 3 C -0.187 4.187 4 C -0.071 4.071 5 C -0.146 4.146 6 C -0.147 4.147 7 C -0.146 4.146 8 C -0.147 4.147 9 C -0.090 4.090 10 C -0.113 4.113 11 C -0.143 4.143 12 C -0.079 4.079 13 H 0.062 0.938 14 C 0.001 3.999 15 C -0.567 4.567 16 H 0.074 0.926 17 C -0.196 4.196 18 N -0.574 5.574 19 Si 0.780 3.220 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.189 1.189 23 H 0.093 0.907 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.147 0.853 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.153 0.847 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.011 0.989 38 H 0.017 0.983 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.582 -4.721 16.580 17.432 hybrid contribution -0.009 -0.098 -1.416 1.419 sum 2.573 -4.819 15.165 16.118 Atomic orbital electron populations 1.21917 0.94113 1.01440 1.01692 1.19396 0.95543 0.95016 0.92029 1.21884 1.00648 0.94894 1.01323 1.19684 0.95710 0.96969 0.94774 1.21385 1.00349 1.00763 0.92137 1.21354 0.97659 0.97368 0.98301 1.21357 0.96263 0.98617 0.98334 1.21373 1.00914 1.00422 0.92022 1.19860 0.96186 0.97214 0.95783 1.20482 0.99873 0.98873 0.92043 1.21505 0.96038 0.98671 0.98114 1.21043 0.95518 0.97660 0.93725 0.93848 1.19044 0.94683 0.94403 0.91758 1.21683 1.40199 1.02490 0.92337 0.92570 1.25856 0.95477 0.95805 1.02427 1.70090 1.45996 1.16598 1.24748 0.85603 0.78822 0.78473 0.79105 1.20126 1.20962 1.18854 0.90738 0.93751 0.93225 0.93216 0.93567 0.91601 0.85307 0.83856 0.83677 0.84661 0.91024 0.89627 0.92504 0.92767 0.98921 0.98304 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 7.80 71.98 0.56 -3.95 16 2 C -0.02 -0.70 0.42 -53.04 -0.02 -0.72 16 3 C -0.13 -4.56 7.59 71.98 0.55 -4.01 16 4 C -0.07 -2.21 4.71 -19.86 -0.09 -2.31 16 5 C -0.13 -3.34 8.90 22.36 0.20 -3.15 16 6 C -0.13 -2.78 10.05 22.21 0.22 -2.56 16 7 C -0.13 -2.67 10.05 22.20 0.22 -2.44 16 8 C -0.13 -3.11 9.61 22.36 0.21 -2.90 16 9 C -0.09 -2.68 5.74 -19.86 -0.11 -2.80 16 10 C -0.08 -2.31 5.67 29.74 0.17 -2.14 16 11 C -0.11 -4.03 5.17 30.62 0.16 -3.88 16 12 C -0.06 -2.56 1.36 -10.77 -0.01 -2.57 16 13 H 0.04 1.91 8.08 -2.39 -0.02 1.89 16 14 C 0.04 1.98 3.53 29.85 0.11 2.09 16 15 C -0.53 -30.01 8.30 25.60 0.21 -29.80 16 16 H 0.06 3.09 7.20 -2.91 -0.02 3.07 16 17 C 0.00 0.09 5.46 84.66 0.46 0.55 16 18 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 19 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 23 H 0.07 2.04 6.41 -2.38 -0.02 2.02 16 24 H 0.04 1.68 6.55 -2.39 -0.02 1.66 16 25 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.05 1.74 6.47 -2.38 -0.02 1.72 16 27 H 0.05 1.84 6.34 -2.39 -0.02 1.82 16 28 H 0.07 1.94 8.07 -2.39 -0.02 1.92 16 29 H 0.13 3.00 6.34 -2.91 -0.02 2.98 16 30 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 32 H 0.14 2.63 8.05 -2.91 -0.02 2.60 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.09 2.22 8.12 -2.39 -0.02 2.20 16 35 H 0.06 2.36 6.87 -2.39 -0.02 2.35 16 36 H 0.05 2.06 6.28 -2.39 -0.01 2.05 16 37 H -0.01 -0.43 6.49 -2.39 -0.02 -0.44 16 38 H 0.00 -0.08 6.61 -2.39 -0.02 -0.09 16 39 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -64.03 297.08 6.16 -57.87 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.02 Total: 12.71 kcal Atomic # 6 Polarization: -63.42 SS G_CDS: 2.83 Total: -60.59 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.28 Total: -56.80 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.03 6.16 -57.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260214973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.193 kcal (2) G-P(sol) polarization free energy of solvation -64.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds