Wall clock time and date at job start Mon Mar 30 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.46977 * 2 1 4 4 N 1.30903 * 125.31120 * 269.94325 * 3 2 1 5 5 C 1.33407 * 109.87253 * 180.02562 * 4 3 2 6 6 C 1.37994 * 107.45777 * 0.02562 * 5 4 3 7 7 C 1.40969 * 133.71333 * 180.02562 * 6 5 4 8 8 C 1.50707 * 120.40863 * 359.97438 * 7 6 5 9 9 H 1.08998 * 109.46764 * 359.97438 * 8 7 6 10 10 C 1.52998 * 109.47003 * 120.00127 * 8 7 6 11 11 C 1.50705 * 109.46634 * 240.00326 * 8 7 6 12 12 H 1.07991 * 120.00425 * 359.97438 * 11 8 7 13 13 C 1.37877 * 119.99371 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99828 * 179.97438 * 13 11 8 15 15 Si 1.86795 * 120.00323 * 359.97438 * 13 11 8 16 16 H 1.48506 * 109.46883 * 90.00348 * 15 13 11 17 17 H 1.48499 * 109.47642 * 210.00313 * 15 13 11 18 18 H 1.48496 * 109.47488 * 330.00758 * 15 13 11 19 19 C 1.35871 * 119.17891 * 179.97438 * 7 6 5 20 20 C 1.40817 * 119.77173 * 359.73137 * 19 7 6 21 21 C 1.34663 * 120.61885 * 0.54883 * 20 19 7 22 22 N 1.35032 * 125.31916 * 89.99753 * 3 2 1 23 23 H 1.09002 * 109.47384 * 300.00442 * 1 2 3 24 24 H 1.09007 * 109.47030 * 60.00561 * 1 2 3 25 25 H 1.08998 * 109.47119 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46943 * 239.99718 * 2 1 3 27 27 H 1.08996 * 109.46658 * 119.99696 * 2 1 3 28 28 H 1.07993 * 126.27458 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47013 * 299.99705 * 10 8 7 30 30 H 1.09002 * 109.47101 * 59.99927 * 10 8 7 31 31 H 1.09000 * 109.46917 * 179.97438 * 10 8 7 32 32 H 0.96997 * 119.99864 * 179.97438 * 14 13 11 33 33 H 1.08008 * 120.11438 * 179.97438 * 19 7 6 34 34 H 1.08001 * 119.68844 * 180.29467 * 20 19 7 35 35 H 1.08002 * 119.72537 * 179.73159 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2855 2.1338 -1.0682 5 6 2.7143 3.3461 -0.7131 6 6 2.7302 3.3921 0.6660 7 6 3.0806 4.3847 1.6037 8 6 3.5590 5.7367 1.1406 9 1 3.5700 5.7645 0.0510 10 6 2.6166 6.8198 1.6694 11 6 4.9510 5.9829 1.6630 12 1 5.4400 5.2355 2.2699 13 6 5.5996 7.1630 1.3668 14 7 6.8142 7.3782 1.8231 15 14 4.7534 8.4561 0.3176 16 1 3.9923 9.3834 1.1930 17 1 5.7733 9.2202 -0.4447 18 1 3.8216 7.7930 -0.6296 19 6 2.9816 4.1074 2.9301 20 6 2.5276 2.8416 3.3478 21 6 2.2004 1.8978 2.4446 22 7 2.2925 2.1568 1.1018 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.9980 4.1449 -1.3822 29 1 1.6099 6.6416 1.2915 30 1 2.6060 6.7918 2.7590 31 1 2.9629 7.7977 1.3348 32 1 7.2707 8.2082 1.6145 33 1 3.2465 4.8566 3.6616 34 1 2.4450 2.6242 4.4025 35 1 1.8580 0.9304 2.7811 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260232541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:41 Heat of formation + Delta-G solvation = 75.015410 kcal Electronic energy + Delta-G solvation = -17368.873606 eV Core-core repulsion = 14753.758128 eV Total energy + Delta-G solvation = -2615.115478 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.38544 -37.40985 -35.15726 -33.69505 -32.20844 -31.04175 -29.45628 -27.18096 -25.15921 -24.08157 -23.29477 -21.81347 -21.30019 -19.13323 -17.23040 -16.61429 -15.98182 -15.56246 -15.20514 -14.87322 -14.26561 -14.10600 -13.54846 -13.29369 -12.93993 -12.55983 -12.29439 -11.96332 -11.82613 -11.66244 -11.45520 -11.26077 -11.12040 -11.02311 -10.39273 -10.06855 -9.85401 -9.78315 -9.46558 -9.16066 -8.71023 -8.60967 -6.85770 -6.13586 -4.14569 1.35687 1.73235 3.00241 3.23673 3.35549 3.37327 3.41055 4.00079 4.35374 4.53774 4.78878 4.90125 5.12524 5.22738 5.24309 5.38099 5.41601 5.52697 5.57043 5.71444 5.89285 5.91881 6.10595 6.13227 6.23049 6.31614 6.42719 6.55138 6.66681 6.79490 6.98617 7.01373 7.17165 7.44978 7.59673 7.65930 8.30807 8.42159 8.88970 9.46343 10.98901 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034769 B = 0.006652 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.126990 B = 4208.458533 C = 4537.094764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.027 4.027 3 C 0.140 3.860 4 N -0.455 5.455 5 C -0.020 4.020 6 C 0.013 3.987 7 C 0.025 3.975 8 C 0.045 3.955 9 H 0.041 0.959 10 C -0.143 4.143 11 C -0.510 4.510 12 H 0.077 0.923 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.886 3.114 16 H -0.278 1.278 17 H -0.296 1.296 18 H -0.264 1.264 19 C -0.146 4.146 20 C -0.108 4.108 21 C 0.002 3.998 22 N -0.355 5.355 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.178 0.822 29 H 0.031 0.969 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.265 0.735 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.685 -10.851 0.942 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 C -0.114 4.114 4 N -0.170 5.170 5 C -0.175 4.175 6 C -0.096 4.096 7 C 0.023 3.977 8 C 0.025 3.975 9 H 0.059 0.941 10 C -0.200 4.200 11 C -0.548 4.548 12 H 0.095 0.905 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.716 3.284 16 H -0.205 1.205 17 H -0.224 1.224 18 H -0.189 1.189 19 C -0.167 4.167 20 C -0.129 4.129 21 C -0.117 4.117 22 N -0.025 5.025 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.195 0.805 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.681 -11.183 0.141 16.172 hybrid contribution -0.081 1.124 0.453 1.214 sum -11.762 -10.059 0.594 15.488 Atomic orbital electron populations 1.21757 0.94483 1.01706 1.02486 1.19796 0.95922 0.87426 1.03490 1.22893 1.11388 0.97177 0.79959 1.69864 1.15228 1.04205 1.27682 1.22481 1.08073 0.95928 0.90977 1.19773 1.07703 0.86613 0.95543 1.19658 0.91574 0.95077 0.91358 1.18276 0.95579 0.86340 0.97266 0.94104 1.22173 0.97476 0.99052 1.01329 1.20885 0.96722 1.03803 1.33380 0.90524 1.24967 0.94667 0.97993 0.95260 1.69879 1.12432 1.25866 1.45202 0.86861 0.78676 0.81890 0.80923 1.20503 1.22365 1.18923 1.20900 1.02847 0.96717 0.96203 1.20844 0.99284 0.93556 0.99228 1.21276 1.08478 1.01361 0.80613 1.42599 1.41747 1.12252 1.05897 0.92997 0.91937 0.91988 0.89023 0.90945 0.80468 0.94959 0.92550 0.93703 0.92471 0.84382 0.84252 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.89 37.16 0.37 -1.10 16 2 C -0.03 -0.32 6.38 -27.88 -0.18 -0.50 16 3 C 0.14 2.33 7.21 -155.09 -1.12 1.21 16 4 N -0.46 -8.66 11.19 -10.12 -0.11 -8.78 16 5 C -0.02 -0.39 11.50 -16.96 -0.19 -0.58 16 6 C 0.01 0.26 6.65 -84.09 -0.56 -0.30 16 7 C 0.03 0.53 4.76 -104.43 -0.50 0.03 16 8 C 0.04 1.03 2.09 -92.92 -0.19 0.84 16 9 H 0.04 0.96 6.21 -51.93 -0.32 0.64 16 10 C -0.14 -2.99 8.49 37.16 0.32 -2.68 16 11 C -0.51 -13.83 8.83 -34.44 -0.30 -14.14 16 12 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 13 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 14 N -0.90 -26.79 13.96 55.43 0.77 -26.01 16 15 Si 0.89 21.36 24.37 -169.99 -4.14 17.22 16 16 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 17 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.26 -6.09 6.53 56.52 0.37 -5.72 16 19 C -0.15 -2.69 8.74 -39.46 -0.35 -3.03 16 20 C -0.11 -1.58 9.97 -39.87 -0.40 -1.98 16 21 C 0.00 0.03 10.80 -16.48 -0.18 -0.15 16 22 N -0.35 -6.19 2.94 -58.16 -0.17 -6.36 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 28 H 0.18 3.31 7.65 -52.49 -0.40 2.90 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.12 7.41 -51.93 -0.38 0.73 16 31 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.14 2.53 7.57 -52.48 -0.40 2.13 16 34 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.15 1.58 7.98 -52.49 -0.42 1.16 16 LS Contribution 286.78 15.07 4.32 4.32 Total: -1.00 -31.37 286.78 -7.35 -38.73 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.64 Total: 1.30 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -3.38 Total: -20.42 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.49 Total: -41.15 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.14 Total: 17.22 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.37 -7.35 -38.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260232541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.743 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds