Wall clock time and date at job start Mon Mar 30 2020 05:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.46977 * 2 1 4 4 N 1.30903 * 125.31120 * 269.94325 * 3 2 1 5 5 C 1.33407 * 109.87253 * 180.02562 * 4 3 2 6 6 C 1.37994 * 107.45777 * 0.02562 * 5 4 3 7 7 C 1.40969 * 133.71333 * 180.02562 * 6 5 4 8 8 C 1.50707 * 120.40863 * 359.97438 * 7 6 5 9 9 H 1.08998 * 109.46764 * 359.97438 * 8 7 6 10 10 C 1.52998 * 109.47003 * 120.00127 * 8 7 6 11 11 C 1.50705 * 109.46634 * 240.00326 * 8 7 6 12 12 H 1.07991 * 120.00425 * 359.97438 * 11 8 7 13 13 C 1.37877 * 119.99371 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99828 * 179.97438 * 13 11 8 15 15 Si 1.86795 * 120.00323 * 359.97438 * 13 11 8 16 16 H 1.48506 * 109.46883 * 90.00348 * 15 13 11 17 17 H 1.48499 * 109.47642 * 210.00313 * 15 13 11 18 18 H 1.48496 * 109.47488 * 330.00758 * 15 13 11 19 19 C 1.35871 * 119.17891 * 179.97438 * 7 6 5 20 20 C 1.40817 * 119.77173 * 359.73137 * 19 7 6 21 21 C 1.34663 * 120.61885 * 0.54883 * 20 19 7 22 22 N 1.35032 * 125.31916 * 89.99753 * 3 2 1 23 23 H 1.09002 * 109.47384 * 300.00442 * 1 2 3 24 24 H 1.09007 * 109.47030 * 60.00561 * 1 2 3 25 25 H 1.08998 * 109.47119 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46943 * 239.99718 * 2 1 3 27 27 H 1.08996 * 109.46658 * 119.99696 * 2 1 3 28 28 H 1.07993 * 126.27458 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47013 * 299.99705 * 10 8 7 30 30 H 1.09002 * 109.47101 * 59.99927 * 10 8 7 31 31 H 1.09000 * 109.46917 * 179.97438 * 10 8 7 32 32 H 0.96997 * 119.99864 * 179.97438 * 14 13 11 33 33 H 1.08008 * 120.11438 * 179.97438 * 19 7 6 34 34 H 1.08001 * 119.68844 * 180.29467 * 20 19 7 35 35 H 1.08002 * 119.72537 * 179.73159 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2855 2.1338 -1.0682 5 6 2.7143 3.3461 -0.7131 6 6 2.7302 3.3921 0.6660 7 6 3.0806 4.3847 1.6037 8 6 3.5590 5.7367 1.1406 9 1 3.5700 5.7645 0.0510 10 6 2.6166 6.8198 1.6694 11 6 4.9510 5.9829 1.6630 12 1 5.4400 5.2355 2.2699 13 6 5.5996 7.1630 1.3668 14 7 6.8142 7.3782 1.8231 15 14 4.7534 8.4561 0.3176 16 1 3.9923 9.3834 1.1930 17 1 5.7733 9.2202 -0.4447 18 1 3.8216 7.7930 -0.6296 19 6 2.9816 4.1074 2.9301 20 6 2.5276 2.8416 3.3478 21 6 2.2004 1.8978 2.4446 22 7 2.2925 2.1568 1.1018 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.9980 4.1449 -1.3822 29 1 1.6099 6.6416 1.2915 30 1 2.6060 6.7918 2.7590 31 1 2.9629 7.7977 1.3348 32 1 7.2707 8.2082 1.6145 33 1 3.2465 4.8566 3.6616 34 1 2.4450 2.6242 4.4025 35 1 1.8580 0.9304 2.7811 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260232541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:37 Heat of formation + Delta-G solvation = 56.599691 kcal Electronic energy + Delta-G solvation = -17369.672171 eV Core-core repulsion = 14753.758128 eV Total energy + Delta-G solvation = -2615.914043 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -43.72367 -38.82786 -36.73262 -34.84861 -33.97206 -32.55302 -30.89330 -28.46192 -27.12526 -25.35167 -24.53116 -23.22604 -22.74678 -20.58198 -18.93743 -18.13448 -17.47089 -16.97102 -16.80981 -16.25184 -15.64107 -15.15890 -14.90191 -14.85927 -14.50909 -14.11761 -13.68069 -13.47756 -13.26514 -12.96612 -12.83705 -12.63788 -12.47518 -12.09732 -11.98884 -11.84042 -11.45045 -11.33157 -11.23185 -10.98020 -10.73478 -10.07236 -8.32076 -8.20858 -6.35102 0.02918 0.39308 1.30347 1.37653 1.47156 1.74264 2.07452 2.31658 2.59727 3.05053 3.42855 3.61701 3.80515 4.05297 4.10574 4.16251 4.30627 4.39153 4.42944 4.55362 4.66668 4.73914 4.81845 4.93707 5.00099 5.02140 5.07838 5.12929 5.23115 5.33906 5.44603 5.57263 5.59326 5.75308 5.86105 6.27148 6.39939 6.69504 6.93859 7.29312 8.85499 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034769 B = 0.006652 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.126990 B = 4208.458533 C = 4537.094764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.028 4.028 3 C 0.151 3.849 4 N -0.481 5.481 5 C -0.051 4.051 6 C -0.006 4.006 7 C -0.020 4.020 8 C 0.048 3.952 9 H 0.029 0.971 10 C -0.138 4.138 11 C -0.506 4.506 12 H 0.035 0.965 13 C 0.017 3.983 14 N -0.946 5.946 15 Si 0.945 3.055 16 H -0.261 1.261 17 H -0.300 1.300 18 H -0.250 1.250 19 C -0.138 4.138 20 C -0.118 4.118 21 C 0.020 3.980 22 N -0.363 5.363 23 H 0.051 0.949 24 H 0.044 0.956 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.172 0.828 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.267 0.733 33 H 0.130 0.870 34 H 0.185 0.815 35 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.185 -12.944 1.788 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 C -0.104 4.104 4 N -0.195 5.195 5 C -0.205 4.205 6 C -0.115 4.115 7 C -0.021 4.021 8 C 0.028 3.972 9 H 0.048 0.952 10 C -0.195 4.195 11 C -0.544 4.544 12 H 0.054 0.946 13 C -0.180 4.180 14 N -0.586 5.586 15 Si 0.772 3.228 16 H -0.187 1.187 17 H -0.228 1.228 18 H -0.174 1.174 19 C -0.158 4.158 20 C -0.138 4.138 21 C -0.099 4.099 22 N -0.034 5.034 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.189 0.811 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.148 0.852 34 H 0.202 0.798 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -14.201 -13.273 0.985 19.463 hybrid contribution 0.692 1.570 0.272 1.737 sum -13.509 -11.704 1.257 17.918 Atomic orbital electron populations 1.21720 0.92974 1.03485 1.01633 1.20109 0.97031 0.84264 1.05306 1.23938 1.08846 0.98474 0.79140 1.69842 1.16316 1.04181 1.29210 1.22528 1.09802 0.96698 0.91434 1.19706 1.08504 0.87858 0.95455 1.19418 0.95480 0.94627 0.92626 1.18089 0.93690 0.89037 0.96377 0.95248 1.22073 0.98165 0.97584 1.01713 1.21097 0.98760 1.02479 1.32074 0.94637 1.25783 0.95185 1.00366 0.96661 1.70025 1.14325 1.26808 1.47455 0.85897 0.77851 0.79362 0.79659 1.18706 1.22755 1.17407 1.21109 1.01243 0.98399 0.95092 1.21244 0.99078 0.91800 1.01677 1.22206 1.05496 1.03131 0.79046 1.42862 1.41863 1.11342 1.07320 0.92976 0.93707 0.88873 0.88373 0.87967 0.81058 0.92526 0.91980 0.94524 0.92439 0.85183 0.79823 0.77790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.89 71.98 0.71 -1.55 16 2 C -0.03 -0.55 6.38 29.85 0.19 -0.36 16 3 C 0.15 4.73 7.21 138.01 1.00 5.72 16 4 N -0.48 -18.19 11.19 -185.92 -2.08 -20.27 16 5 C -0.05 -2.09 11.50 84.40 0.97 -1.12 16 6 C -0.01 -0.22 6.65 38.77 0.26 0.03 16 7 C -0.02 -0.82 4.76 -19.74 -0.09 -0.91 16 8 C 0.05 2.23 2.09 -12.28 -0.03 2.20 16 9 H 0.03 1.43 6.21 -2.39 -0.01 1.41 16 10 C -0.14 -5.70 8.49 71.98 0.61 -5.09 16 11 C -0.51 -28.58 8.83 25.60 0.23 -28.35 16 12 H 0.04 2.23 7.84 -2.92 -0.02 2.21 16 13 C 0.02 1.01 5.45 84.65 0.46 1.47 16 14 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 15 Si 0.95 44.74 24.37 68.60 1.67 46.42 16 16 H -0.26 -11.58 6.87 99.48 0.68 -10.90 16 17 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 18 H -0.25 -11.14 6.53 99.48 0.65 -10.49 16 19 C -0.14 -4.95 8.74 22.35 0.20 -4.75 16 20 C -0.12 -3.05 9.97 22.08 0.22 -2.83 16 21 C 0.02 0.48 10.80 83.05 0.90 1.38 16 22 N -0.36 -11.87 2.94 -337.92 -0.99 -12.87 16 23 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.10 1.42 8.04 -2.39 -0.02 1.40 16 28 H 0.17 6.82 7.65 -2.91 -0.02 6.80 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 2.43 7.41 -2.39 -0.02 2.41 16 31 H 0.04 1.55 3.27 -2.39 -0.01 1.54 16 32 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.13 4.76 7.57 -2.91 -0.02 4.74 16 34 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.21 2.83 7.98 -2.91 -0.02 2.80 16 Total: -1.00 -72.21 286.78 5.51 -66.70 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.00 Total: 12.66 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: 5.62 Total: -34.16 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -2.78 Total: -91.62 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.67 Total: 46.42 kcal Total: -72.21 5.51 -66.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260232541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.300 kcal (2) G-P(sol) polarization free energy of solvation -72.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds