Wall clock time and date at job start Mon Mar 30 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.30906 * 125.31304 * 59.69649 * 4 2 1 6 6 C 1.33401 * 109.87024 * 179.82978 * 5 4 2 7 7 C 1.37994 * 107.45830 * 0.42716 * 6 5 4 8 8 C 1.40968 * 133.70650 * 179.72117 * 7 6 5 9 9 C 1.35875 * 119.17641 * 180.02562 * 8 7 6 10 10 C 1.40808 * 119.77183 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.69271 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47439 * 269.97758 * 11 10 9 13 13 H 1.08007 * 120.00029 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00326 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99750 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00158 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47203 * 60.00018 * 16 14 12 18 18 H 1.48501 * 109.47229 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47243 * 300.00051 * 16 14 12 20 20 C 1.34665 * 120.62121 * 359.97438 * 10 9 8 21 21 N 1.35032 * 125.31589 * 239.99873 * 4 2 1 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.07997 * 126.26859 * 180.15411 * 6 5 4 30 30 H 1.08007 * 120.41351 * 0.04801 * 8 7 6 31 31 H 1.08007 * 120.11232 * 180.02562 * 9 8 7 32 32 H 1.09003 * 109.46932 * 29.98158 * 11 10 9 33 33 H 1.09002 * 109.47608 * 149.97509 * 11 10 9 34 34 H 0.96996 * 120.00004 * 180.02562 * 15 14 12 35 35 H 1.07997 * 119.72825 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7765 -0.3584 -2.4650 6 6 2.3772 -1.1981 -3.3097 7 6 3.0435 -2.1404 -2.5530 8 6 3.8360 -3.2619 -2.8711 9 6 4.3628 -4.0076 -1.8648 10 6 4.1110 -3.6524 -0.5257 11 6 4.6967 -4.4804 0.5889 12 6 3.7320 -5.5768 0.9606 13 1 2.7892 -5.6656 0.4412 14 6 4.0534 -6.4674 1.9629 15 7 5.2016 -6.3597 2.5950 16 14 2.8579 -7.8269 2.4231 17 1 2.6120 -8.6911 1.2407 18 1 3.4355 -8.6435 3.5207 19 1 1.5760 -7.2275 2.8732 20 6 3.3527 -2.5792 -0.2317 21 7 2.8120 -1.8129 -1.2315 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 2.3441 -1.1518 -4.3882 30 1 4.0225 -3.5250 -3.9019 31 1 4.9726 -4.8698 -2.0913 32 1 5.6376 -4.9207 0.2587 33 1 4.8774 -3.8459 1.4566 34 1 5.4279 -6.9864 3.2998 35 1 3.1692 -2.3196 0.8004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260263480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:22 Heat of formation + Delta-G solvation = 59.068026 kcal Electronic energy + Delta-G solvation = -17020.805357 eV Core-core repulsion = 14404.998349 eV Total energy + Delta-G solvation = -2615.807008 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.36642 -37.44664 -35.17022 -33.41790 -32.69670 -31.11891 -27.72745 -27.08181 -26.86522 -23.78919 -23.08519 -22.05561 -21.11214 -19.33013 -17.10040 -16.48292 -16.17026 -15.42318 -15.13065 -14.78364 -14.34025 -13.82959 -13.71991 -13.16295 -13.05018 -12.50793 -12.12233 -11.88484 -11.76359 -11.44871 -11.28923 -11.08247 -10.98733 -10.87007 -10.77578 -10.61081 -10.21972 -9.92798 -9.79025 -9.62498 -8.56269 -8.36704 -6.94317 -6.18359 -4.23992 1.35548 1.83401 3.08436 3.23577 3.28447 3.31169 3.41755 3.97042 4.34154 4.55132 4.91818 4.98462 5.17061 5.19564 5.21876 5.39030 5.41198 5.52373 5.64434 5.69766 5.78029 5.91020 5.93310 6.01832 6.23536 6.30330 6.38117 6.46102 6.63561 6.77148 6.96464 7.13219 7.32568 7.51732 7.69390 7.76071 8.11967 8.29719 8.80409 9.41225 10.91024 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024879 B = 0.006121 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.157559 B = 4573.334223 C = 5114.370723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.003 4.003 3 C -0.137 4.137 4 C 0.150 3.850 5 N -0.454 5.454 6 C -0.043 4.043 7 C 0.001 3.999 8 C -0.099 4.099 9 C -0.097 4.097 10 C -0.045 4.045 11 C 0.058 3.942 12 C -0.520 4.520 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.012 3.988 21 N -0.348 5.348 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.172 0.828 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.037 0.963 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 9.667 -6.160 12.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 C -0.195 4.195 4 C -0.104 4.104 5 N -0.168 5.168 6 C -0.198 4.198 7 C -0.110 4.110 8 C -0.119 4.119 9 C -0.118 4.118 10 C -0.048 4.048 11 C 0.020 3.980 12 C -0.558 4.558 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.107 4.107 21 N -0.016 5.016 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.190 0.810 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.593 10.342 -6.087 12.849 hybrid contribution -0.045 -1.692 0.481 1.759 sum -4.638 8.650 -5.606 11.303 Atomic orbital electron populations 1.21767 0.93439 1.02139 1.02221 1.19428 0.96340 0.95414 0.91111 1.21765 1.00967 0.94509 1.02255 1.22815 1.01571 0.90538 0.95522 1.69756 1.21623 1.26774 0.98627 1.22294 1.03655 0.95053 0.98817 1.19677 1.06354 1.00974 0.83957 1.20435 0.97826 0.93471 1.00120 1.21219 0.99369 0.99343 0.91894 1.20342 0.94731 0.92866 0.96868 1.18296 0.96337 0.93428 0.89936 1.20976 1.03355 1.12538 1.18908 0.92487 1.24990 0.95400 0.97726 0.95917 1.69930 1.21788 1.37367 1.23871 0.86572 0.81093 0.81713 0.78210 1.20063 1.21071 1.20115 1.21436 1.01650 0.95135 0.92432 1.42733 1.32315 1.19526 1.07051 0.92751 0.91611 0.92114 0.90147 0.92857 0.91602 0.92120 0.81039 0.84382 0.84730 0.94497 0.94980 0.92552 0.82403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.17 37.16 0.34 -1.37 16 2 C 0.00 -0.04 3.32 -91.77 -0.31 -0.34 16 3 C -0.14 -1.64 9.18 37.16 0.34 -1.30 16 4 C 0.15 2.58 6.47 -155.09 -1.00 1.58 16 5 N -0.45 -8.00 11.19 -10.12 -0.11 -8.11 16 6 C -0.04 -0.71 12.02 -16.96 -0.20 -0.92 16 7 C 0.00 0.02 6.80 -84.09 -0.57 -0.55 16 8 C -0.10 -1.60 10.11 -39.40 -0.40 -2.00 16 9 C -0.10 -1.75 9.73 -39.46 -0.38 -2.13 16 10 C -0.05 -0.93 5.04 -104.92 -0.53 -1.46 16 11 C 0.06 1.37 5.08 -29.04 -0.15 1.23 16 12 C -0.52 -13.77 9.09 -34.44 -0.31 -14.08 16 13 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 16 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.01 0.23 10.30 -16.47 -0.17 0.06 16 21 N -0.35 -6.43 2.94 -58.16 -0.17 -6.60 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 1.08 7.30 -51.93 -0.38 0.70 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.17 2.28 8.06 -52.49 -0.42 1.86 16 30 H 0.14 1.74 8.06 -52.48 -0.42 1.31 16 31 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 32 H 0.04 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 35 H 0.16 2.83 7.46 -52.49 -0.39 2.44 16 LS Contribution 300.05 15.07 4.52 4.52 Total: -1.00 -29.49 300.05 -8.44 -37.93 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.96 Total: 0.60 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -3.44 Total: -19.70 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.45 Total: -39.11 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.49 -8.44 -37.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260263480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.001 kcal (2) G-P(sol) polarization free energy of solvation -29.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds