Wall clock time and date at job start Mon Mar 30 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.30906 * 125.31304 * 59.69649 * 4 2 1 6 6 C 1.33401 * 109.87024 * 179.82978 * 5 4 2 7 7 C 1.37994 * 107.45830 * 0.42716 * 6 5 4 8 8 C 1.40968 * 133.70650 * 179.72117 * 7 6 5 9 9 C 1.35875 * 119.17641 * 180.02562 * 8 7 6 10 10 C 1.40808 * 119.77183 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.69271 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47439 * 269.97758 * 11 10 9 13 13 H 1.08007 * 120.00029 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00326 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99750 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00158 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47203 * 60.00018 * 16 14 12 18 18 H 1.48501 * 109.47229 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47243 * 300.00051 * 16 14 12 20 20 C 1.34665 * 120.62121 * 359.97438 * 10 9 8 21 21 N 1.35032 * 125.31589 * 239.99873 * 4 2 1 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.07997 * 126.26859 * 180.15411 * 6 5 4 30 30 H 1.08007 * 120.41351 * 0.04801 * 8 7 6 31 31 H 1.08007 * 120.11232 * 180.02562 * 9 8 7 32 32 H 1.09003 * 109.46932 * 29.98158 * 11 10 9 33 33 H 1.09002 * 109.47608 * 149.97509 * 11 10 9 34 34 H 0.96996 * 120.00004 * 180.02562 * 15 14 12 35 35 H 1.07997 * 119.72825 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7765 -0.3584 -2.4650 6 6 2.3772 -1.1981 -3.3097 7 6 3.0435 -2.1404 -2.5530 8 6 3.8360 -3.2619 -2.8711 9 6 4.3628 -4.0076 -1.8648 10 6 4.1110 -3.6524 -0.5257 11 6 4.6967 -4.4804 0.5889 12 6 3.7320 -5.5768 0.9606 13 1 2.7892 -5.6656 0.4412 14 6 4.0534 -6.4674 1.9629 15 7 5.2016 -6.3597 2.5950 16 14 2.8579 -7.8269 2.4231 17 1 2.6120 -8.6911 1.2407 18 1 3.4355 -8.6435 3.5207 19 1 1.5760 -7.2275 2.8732 20 6 3.3527 -2.5792 -0.2317 21 7 2.8120 -1.8129 -1.2315 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 2.3441 -1.1518 -4.3882 30 1 4.0225 -3.5250 -3.9019 31 1 4.9726 -4.8698 -2.0913 32 1 5.6376 -4.9207 0.2587 33 1 4.8774 -3.8459 1.4566 34 1 5.4279 -6.9864 3.2998 35 1 3.1692 -2.3196 0.8004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260263480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:21 Heat of formation + Delta-G solvation = 44.799086 kcal Electronic energy + Delta-G solvation = -17021.424104 eV Core-core repulsion = 14404.998349 eV Total energy + Delta-G solvation = -2616.425756 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.71621 -38.87394 -36.31711 -35.28938 -34.08811 -32.78505 -29.27900 -28.42181 -28.05006 -25.57554 -24.37893 -23.36719 -22.63801 -20.62958 -18.56230 -18.39479 -17.57461 -16.79944 -16.71875 -16.33751 -15.62451 -15.10054 -14.91906 -14.54446 -14.47518 -14.02178 -13.61587 -13.47858 -13.07933 -12.84956 -12.69283 -12.55121 -12.49244 -12.23674 -12.12855 -11.92039 -11.72188 -11.65582 -11.44520 -11.19891 -10.63215 -9.88623 -8.34834 -8.19637 -6.37251 -0.02293 0.42106 1.40010 1.40677 1.49299 1.72989 2.08502 2.36380 2.59882 3.07914 3.37481 3.62151 3.73994 3.95136 4.07348 4.18606 4.21095 4.24041 4.29745 4.62415 4.80761 4.81256 4.91041 4.93622 4.99862 5.03980 5.12578 5.28460 5.29172 5.32295 5.36542 5.58606 5.69119 5.77793 5.81987 6.09321 6.30055 6.73801 6.95927 7.31826 8.84817 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024879 B = 0.006121 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.157559 B = 4573.334223 C = 5114.370723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.011 4.011 3 C -0.130 4.130 4 C 0.149 3.851 5 N -0.470 5.470 6 C -0.032 4.032 7 C -0.029 4.029 8 C -0.072 4.072 9 C -0.125 4.125 10 C -0.060 4.060 11 C 0.067 3.933 12 C -0.532 4.532 13 H 0.052 0.948 14 C 0.012 3.988 15 N -0.925 5.925 16 Si 0.960 3.040 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.271 1.271 20 C 0.008 3.992 21 N -0.360 5.360 22 H 0.039 0.961 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.206 0.794 30 H 0.180 0.820 31 H 0.142 0.858 32 H 0.018 0.982 33 H 0.012 0.988 34 H 0.267 0.733 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 10.229 -7.185 13.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.031 4.031 3 C -0.188 4.188 4 C -0.105 4.105 5 N -0.184 5.184 6 C -0.187 4.187 7 C -0.139 4.139 8 C -0.091 4.091 9 C -0.146 4.146 10 C -0.063 4.063 11 C 0.030 3.970 12 C -0.570 4.570 13 H 0.070 0.930 14 C -0.187 4.187 15 N -0.564 5.564 16 Si 0.784 3.216 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.196 1.196 20 C -0.110 4.110 21 N -0.029 5.029 22 H 0.059 0.941 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.223 0.777 30 H 0.197 0.803 31 H 0.160 0.840 32 H 0.037 0.963 33 H 0.030 0.970 34 H 0.076 0.924 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.932 10.906 -7.128 14.316 hybrid contribution 0.332 -1.736 0.727 1.911 sum -5.599 9.171 -6.401 12.507 Atomic orbital electron populations 1.21726 0.92179 1.01578 1.03417 1.19682 0.97374 0.96244 0.89786 1.21718 1.00357 0.93282 1.03394 1.23570 1.00445 0.89925 0.96603 1.69835 1.22330 1.27313 0.98936 1.22951 1.01774 0.93701 1.00277 1.20170 1.07623 1.02157 0.83926 1.20829 0.95164 0.91602 1.01531 1.21251 1.01274 1.00776 0.91265 1.20044 0.95905 0.93325 0.97007 1.18012 0.95407 0.93069 0.90542 1.21267 1.03535 1.13296 1.18890 0.92970 1.25806 0.96976 1.00022 0.95867 1.70039 1.23465 1.38431 1.24492 0.85576 0.78973 0.78901 0.78101 1.19368 1.20490 1.19569 1.21310 1.01689 0.95143 0.92893 1.42860 1.32873 1.19965 1.07243 0.94144 0.91922 0.89400 0.90145 0.93743 0.91975 0.89442 0.77696 0.80294 0.83988 0.96330 0.96974 0.92396 0.82263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.17 71.98 0.66 -2.36 16 2 C -0.01 -0.28 3.32 -11.54 -0.04 -0.32 16 3 C -0.13 -2.86 9.18 71.98 0.66 -2.20 16 4 C 0.15 4.97 6.47 138.01 0.89 5.86 16 5 N -0.47 -15.69 11.19 -185.92 -2.08 -17.77 16 6 C -0.03 -0.98 12.02 84.40 1.01 0.04 16 7 C -0.03 -0.99 6.80 38.77 0.26 -0.72 16 8 C -0.07 -2.19 10.11 22.39 0.23 -1.96 16 9 C -0.12 -4.46 9.73 22.35 0.22 -4.25 16 10 C -0.06 -2.50 5.04 -20.06 -0.10 -2.61 16 11 C 0.07 3.35 5.08 29.10 0.15 3.50 16 12 C -0.53 -28.78 9.09 25.60 0.23 -28.55 16 13 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 14 C 0.01 0.68 5.46 84.66 0.46 1.14 16 15 N -0.92 -53.17 13.29 21.45 0.28 -52.89 16 16 Si 0.96 42.66 29.54 68.60 2.03 44.68 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 C 0.01 0.33 10.30 83.05 0.86 1.18 16 21 N -0.36 -13.10 2.94 -337.92 -0.99 -14.09 16 22 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.08 2.11 7.30 -2.39 -0.02 2.09 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.21 4.65 8.06 -2.91 -0.02 4.62 16 30 H 0.18 3.82 8.06 -2.91 -0.02 3.80 16 31 H 0.14 4.73 8.06 -2.91 -0.02 4.70 16 32 H 0.02 0.97 8.09 -2.39 -0.02 0.95 16 33 H 0.01 0.63 8.07 -2.39 -0.02 0.61 16 34 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.16 5.93 7.46 -2.91 -0.02 5.91 16 Total: -1.00 -63.36 300.05 5.79 -57.57 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 1.06 Total: 13.75 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 5.49 Total: -31.25 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -2.79 Total: -84.75 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -63.36 5.79 -57.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260263480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.366 kcal (2) G-P(sol) polarization free energy of solvation -63.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds