Wall clock time and date at job start Mon Mar 30 2020 05:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37756 * 120.11063 * 2 1 4 4 C 1.38682 * 120.51839 * 180.02562 * 3 2 1 5 5 C 1.38000 * 120.43663 * 0.02681 * 4 3 2 6 6 C 1.38671 * 119.83068 * 359.97438 * 5 4 3 7 7 C 1.39635 * 120.11501 * 180.02562 * 2 1 3 8 8 N 1.35907 * 133.50551 * 359.94744 * 7 2 1 9 9 C 1.30094 * 109.73334 * 180.02562 * 8 7 2 10 10 C 1.50702 * 124.97082 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47418 * 300.02593 * 10 9 8 12 12 C 1.53001 * 109.47192 * 60.03003 * 10 9 8 13 13 N 1.36530 * 110.04923 * 0.23502 * 9 8 7 14 14 C 1.37306 * 126.39837 * 179.73746 * 13 9 8 15 15 H 1.08005 * 120.00167 * 33.68961 * 14 13 9 16 16 C 1.38912 * 120.00319 * 213.69574 * 14 13 9 17 17 N 1.31387 * 119.99576 * 20.07128 * 16 14 13 18 18 Si 1.86801 * 120.00245 * 200.07270 * 16 14 13 19 19 H 1.48494 * 109.46940 * 89.99916 * 18 16 14 20 20 H 1.48505 * 109.47048 * 210.00047 * 18 16 14 21 21 H 1.48495 * 109.46989 * 329.99749 * 18 16 14 22 22 H 1.09000 * 109.47262 * 269.93756 * 1 2 3 23 23 H 1.09001 * 109.47181 * 29.93853 * 1 2 3 24 24 H 1.09003 * 109.46872 * 149.93632 * 1 2 3 25 25 H 1.08001 * 119.74173 * 0.04838 * 3 2 1 26 26 H 1.07996 * 119.77871 * 180.02562 * 4 3 2 27 27 H 1.07994 * 120.08663 * 180.02562 * 5 4 3 28 28 H 1.09007 * 109.46779 * 180.02562 * 10 9 8 29 29 H 1.09007 * 109.46978 * 60.00327 * 11 10 9 30 30 H 1.08994 * 109.47104 * 300.00296 * 11 10 9 31 31 H 1.08996 * 109.46985 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.47118 * 299.99666 * 12 10 9 33 33 H 1.09000 * 109.47011 * 59.99790 * 12 10 9 34 34 H 1.09006 * 109.47220 * 179.97438 * 12 10 9 35 35 H 0.96997 * 119.99434 * 178.75566 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1917 0.0000 4 6 3.5849 1.2015 -0.0005 5 6 4.2924 0.0167 -0.0016 6 6 3.6133 -1.1923 -0.0017 7 6 2.2076 -1.2079 -0.0005 8 7 1.8244 -2.5118 -0.0002 9 6 2.8754 -3.2785 -0.0005 10 6 2.8453 -4.7852 0.0003 11 6 2.1143 -5.2802 1.2499 12 6 2.1139 -5.2814 -1.2486 13 7 4.0094 -2.5183 0.0042 14 6 5.3016 -2.9826 0.0105 15 1 5.5490 -3.8979 -0.5066 16 6 6.2906 -2.2751 0.6820 17 7 5.9615 -1.4127 1.6169 18 14 8.0885 -2.5499 0.2557 19 1 8.4919 -1.6080 -0.8190 20 1 8.9244 -2.3141 1.4603 21 1 8.2782 -3.9462 -0.2128 22 1 -0.3634 -0.0011 1.0277 23 1 -0.3633 0.8905 -0.5129 24 1 -0.3633 -0.8894 -0.5148 25 1 1.6557 2.1256 0.0008 26 1 4.1146 2.1427 -0.0001 27 1 5.3723 0.0310 -0.0016 28 1 3.8656 -5.1690 0.0003 29 1 1.0940 -4.8965 1.2498 30 1 2.6353 -4.9267 2.1396 31 1 2.0922 -6.3699 1.2501 32 1 1.0937 -4.8978 -1.2487 33 1 2.6348 -4.9288 -2.1388 34 1 2.0926 -6.3713 -1.2483 35 1 6.6529 -0.9319 2.0983 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260286959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:45 Heat of formation + Delta-G solvation = 46.101655 kcal Electronic energy + Delta-G solvation = -17766.615370 eV Core-core repulsion = 15150.246097 eV Total energy + Delta-G solvation = -2616.369272 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.78283 -36.65313 -34.55181 -33.78420 -31.71207 -30.55349 -27.82029 -26.61741 -25.62350 -25.18908 -22.61195 -21.16869 -19.82836 -18.79256 -17.12527 -16.35872 -15.27193 -14.70285 -14.49322 -14.10176 -13.71045 -13.34067 -13.04418 -12.77013 -12.46617 -12.31569 -11.95284 -11.66381 -11.52929 -11.34643 -11.24058 -10.84086 -10.73686 -10.71798 -10.63719 -10.38591 -10.17082 -10.10705 -9.44847 -8.78173 -8.58921 -7.16212 -6.82541 -6.61286 -4.49580 2.15505 2.76166 2.99925 3.01982 3.03985 3.77645 4.05293 4.57092 4.71257 5.08730 5.22078 5.61181 5.71260 5.76770 5.88385 5.92573 6.09501 6.16632 6.22827 6.30473 6.34225 6.37535 6.44056 6.52940 6.64621 6.74281 6.79961 6.85006 6.91898 7.03180 7.14533 7.27332 7.61650 7.68035 7.90940 8.12872 8.22102 8.65356 9.27055 9.44717 10.21994 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.011888 C = 0.007478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.103899 B = 2354.785380 C = 3743.611484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.061 4.061 3 C -0.147 4.147 4 C -0.155 4.155 5 C -0.048 4.048 6 C 0.047 3.953 7 C 0.032 3.968 8 N -0.523 5.523 9 C 0.220 3.780 10 C -0.003 4.003 11 C -0.132 4.132 12 C -0.135 4.135 13 N -0.287 5.287 14 C -0.361 4.361 15 H 0.108 0.892 16 C 0.055 3.945 17 N -0.820 5.820 18 Si 0.927 3.073 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.263 1.263 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.573 -1.543 -2.313 3.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.063 4.063 3 C -0.168 4.168 4 C -0.176 4.176 5 C -0.068 4.068 6 C -0.068 4.068 7 C -0.092 4.092 8 N -0.245 5.245 9 C -0.042 4.042 10 C -0.023 4.023 11 C -0.191 4.191 12 C -0.193 4.193 13 N 0.042 4.958 14 C -0.489 4.489 15 H 0.125 0.875 16 C -0.158 4.158 17 N -0.449 5.449 18 Si 0.751 3.249 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.187 1.187 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.136 -1.782 -2.143 4.196 hybrid contribution 1.980 0.339 0.109 2.012 sum -1.156 -1.443 -2.034 2.749 Atomic orbital electron populations 1.20516 0.92353 1.01303 1.00997 1.18722 0.94472 0.90207 1.02873 1.20356 0.93955 0.95798 1.06723 1.20529 0.93803 0.96433 1.06852 1.20005 0.99129 0.89293 0.98389 1.18661 0.93755 0.86115 1.08291 1.18664 0.90656 0.91630 1.08273 1.70063 1.28249 0.99936 1.26298 1.23101 0.81830 0.94488 1.04777 1.19375 1.00615 0.86285 0.96011 1.21697 1.00984 0.99417 0.96960 1.21743 1.01150 0.99579 0.96798 1.41165 1.05648 1.03028 1.45910 1.19606 0.81459 1.12056 1.35780 0.87450 1.25551 1.01434 0.95548 0.93288 1.70062 1.35622 1.22939 1.16279 0.85938 0.80592 0.79720 0.78660 1.19434 1.20263 1.18748 0.92566 0.93030 0.91814 0.87574 0.87577 0.86834 0.89815 0.91983 0.92826 0.92925 0.91859 0.93130 0.92868 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 10.02 36.01 0.36 -1.36 16 2 C -0.06 -1.35 5.91 -104.28 -0.62 -1.97 16 3 C -0.15 -3.03 9.67 -39.59 -0.38 -3.41 16 4 C -0.16 -3.35 10.03 -39.50 -0.40 -3.74 16 5 C -0.05 -1.19 8.56 -39.51 -0.34 -1.53 16 6 C 0.05 1.26 6.16 -83.86 -0.52 0.75 16 7 C 0.03 0.81 6.90 -84.66 -0.58 0.22 16 8 N -0.52 -13.03 11.26 -8.11 -0.09 -13.12 16 9 C 0.22 5.32 6.34 -154.38 -0.98 4.35 16 10 C 0.00 -0.05 3.25 -91.77 -0.30 -0.35 16 11 C -0.13 -2.29 9.17 37.16 0.34 -1.95 16 12 C -0.13 -2.21 9.17 37.16 0.34 -1.87 16 13 N -0.29 -7.61 2.86 -56.65 -0.16 -7.77 16 14 C -0.36 -9.25 9.29 -14.85 -0.14 -9.38 16 15 H 0.11 2.57 7.36 -52.48 -0.39 2.19 16 16 C 0.05 1.35 4.53 -17.49 -0.08 1.27 16 17 N -0.82 -21.45 10.62 55.49 0.59 -20.86 16 18 Si 0.93 18.69 29.60 -169.99 -5.03 13.66 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 24 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 25 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 26 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 27 H 0.11 2.87 6.28 -52.49 -0.33 2.54 16 28 H 0.08 1.61 6.97 -51.93 -0.36 1.25 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 292.86 15.07 4.41 4.41 Total: -1.00 -29.16 292.86 -8.43 -37.58 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.86 Total: 5.07 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -3.29 Total: -18.97 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.34 Total: -41.75 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.16 -8.43 -37.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260286959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.683 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds