Wall clock time and date at job start Mon Mar 30 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30106 * 124.95337 * 2 1 4 4 C 1.35777 * 109.64555 * 180.02562 * 3 2 1 5 5 C 1.39748 * 133.59997 * 179.97438 * 4 3 2 6 6 C 1.36607 * 119.88359 * 180.02562 * 5 4 3 7 7 C 1.38776 * 120.67095 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.77727 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47112 * 118.24308 * 8 7 6 10 10 C 1.53003 * 109.46869 * 358.24446 * 8 7 6 11 11 C 1.50695 * 109.47271 * 238.24877 * 8 7 6 12 12 H 1.08002 * 119.99731 * 359.92820 * 11 8 7 13 13 C 1.37882 * 120.00058 * 180.21069 * 11 8 7 14 14 N 1.31511 * 119.99632 * 359.72158 * 13 11 8 15 15 Si 1.86794 * 119.99849 * 179.72154 * 13 11 8 16 16 H 1.48497 * 109.47329 * 59.99797 * 15 13 11 17 17 H 1.48504 * 109.46980 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47362 * 299.99667 * 15 13 11 19 19 C 1.37860 * 120.44891 * 0.23075 * 7 6 5 20 20 C 1.38829 * 119.69036 * 359.49473 * 19 7 6 21 21 N 1.36039 * 124.94875 * 180.02562 * 2 1 3 22 22 H 0.96999 * 126.34840 * 359.94431 * 21 2 1 23 23 H 1.08995 * 109.46590 * 89.97546 * 1 2 3 24 24 H 1.08995 * 109.47089 * 209.98046 * 1 2 3 25 25 H 1.09001 * 109.46931 * 329.98190 * 1 2 3 26 26 H 1.07991 * 120.05686 * 359.97438 * 5 4 3 27 27 H 1.07999 * 119.66503 * 179.97438 * 6 5 4 28 28 H 1.08999 * 109.47285 * 180.02562 * 9 8 7 29 29 H 1.08996 * 109.47148 * 300.00119 * 9 8 7 30 30 H 1.08994 * 109.47350 * 60.00178 * 9 8 7 31 31 H 1.08996 * 109.47247 * 300.00464 * 10 8 7 32 32 H 1.09004 * 109.47066 * 59.99750 * 10 8 7 33 33 H 1.08998 * 109.47449 * 179.97438 * 10 8 7 34 34 H 0.96998 * 119.99606 * 180.02562 * 14 13 11 35 35 H 1.08003 * 120.15167 * 179.74098 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0664 0.0000 4 6 3.5620 0.7079 -0.0006 5 6 4.7587 1.4296 -0.0013 6 6 5.9532 0.7668 -0.0023 7 6 5.9931 -0.6204 -0.0031 8 6 7.3221 -1.3309 -0.0048 9 6 7.4512 -2.1740 1.2653 10 6 8.4516 -0.2998 -0.0495 11 6 7.4115 -2.2264 -1.2135 12 1 6.5878 -2.2769 -1.9102 13 6 8.5425 -2.9856 -1.4270 14 7 9.5454 -2.9241 -0.5785 15 14 8.6500 -4.1014 -2.9211 16 1 8.5259 -3.2874 -4.1569 17 1 9.9584 -4.8040 -2.9211 18 1 7.5516 -5.0997 -2.8736 19 6 4.8252 -1.3529 -0.0078 20 6 3.6019 -0.6966 -0.0010 21 7 2.2863 -1.1151 -0.0005 22 1 1.9753 -2.0338 -0.0002 23 1 -0.3632 0.0004 -1.0276 24 1 -0.3633 -0.8901 0.5135 25 1 -0.3633 0.8898 0.5141 26 1 4.7392 2.5093 -0.0019 27 1 6.8759 1.3281 -0.0032 28 1 8.4127 -2.6876 1.2643 29 1 7.3866 -1.5263 2.1395 30 1 6.6466 -2.9086 1.2972 31 1 8.3596 0.3010 -0.9542 32 1 8.3870 0.3480 0.8248 33 1 9.4129 -0.8136 -0.0502 34 1 10.3412 -3.4579 -0.7289 35 1 4.8619 -2.4323 -0.0126 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260297395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:40 Heat of formation + Delta-G solvation = 40.981449 kcal Electronic energy + Delta-G solvation = -17311.302859 eV Core-core repulsion = 14694.711558 eV Total energy + Delta-G solvation = -2616.591301 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.98074 -39.42968 -36.32837 -34.03599 -33.26429 -31.71769 -30.66608 -28.10460 -27.32157 -27.15731 -23.55077 -23.04890 -21.72044 -20.89584 -18.47689 -18.21687 -17.35342 -16.84146 -16.37404 -15.82209 -15.32083 -14.85586 -14.63151 -14.21166 -13.82093 -13.71876 -13.42620 -13.24275 -13.01873 -12.91523 -12.65090 -12.54897 -12.35441 -12.15206 -12.02250 -11.56734 -11.40749 -11.29357 -10.87922 -10.71361 -10.34131 -9.20042 -8.77925 -7.97671 -6.13698 0.17047 0.67955 1.43052 1.45001 1.51242 1.90218 2.04757 2.46633 3.03903 3.24980 3.29524 3.78362 4.23206 4.31258 4.38072 4.57816 4.66373 4.71232 4.75770 4.85585 4.88448 5.00103 5.09394 5.15026 5.18796 5.32324 5.41346 5.57403 5.61699 5.63386 5.72028 5.87202 6.06585 6.20536 6.30888 6.48174 6.57720 6.89969 6.98115 7.52870 9.00350 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031180 B = 0.006431 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.805076 B = 4352.926325 C = 4829.230731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.277 3.723 3 N -0.531 5.531 4 C 0.006 3.994 5 C -0.080 4.080 6 C -0.133 4.133 7 C -0.033 4.033 8 C 0.091 3.909 9 C -0.116 4.116 10 C -0.124 4.124 11 C -0.512 4.512 12 H 0.043 0.957 13 C 0.026 3.974 14 N -0.902 5.902 15 Si 0.943 3.057 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.276 1.276 19 C -0.118 4.118 20 C 0.038 3.962 21 N -0.594 5.594 22 H 0.434 0.566 23 H 0.103 0.897 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.064 0.936 29 H 0.022 0.978 30 H 0.024 0.976 31 H 0.028 0.972 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.260 0.740 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 2.883 1.949 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.010 3.990 3 N -0.254 5.254 4 C -0.110 4.110 5 C -0.099 4.099 6 C -0.153 4.153 7 C -0.035 4.035 8 C 0.091 3.909 9 C -0.174 4.174 10 C -0.181 4.181 11 C -0.550 4.550 12 H 0.061 0.939 13 C -0.173 4.173 14 N -0.541 5.541 15 Si 0.770 3.230 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.202 1.202 19 C -0.140 4.140 20 C -0.072 4.072 21 N -0.208 5.208 22 H 0.276 0.724 23 H 0.121 0.879 24 H 0.125 0.875 25 H 0.119 0.881 26 H 0.156 0.844 27 H 0.156 0.844 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.395 3.685 1.980 14.990 hybrid contribution 0.712 -1.990 -0.845 2.276 sum -13.682 1.695 1.135 13.833 Atomic orbital electron populations 1.20567 0.80525 1.06115 1.05555 1.24519 0.97346 0.80384 0.96774 1.70301 1.00875 1.29328 1.24908 1.19271 0.92532 0.91090 1.08137 1.20127 0.88991 0.99996 1.00809 1.20931 0.97972 0.94055 1.02369 1.20265 0.95540 0.93517 0.94136 1.17218 0.87482 0.92199 0.94033 1.21666 1.01614 0.98549 0.95558 1.21757 1.01585 0.97292 0.97504 1.21234 1.01426 1.24305 1.08057 0.93885 1.25482 0.95534 0.97884 0.98397 1.69918 1.06178 1.41244 1.36743 0.85857 0.77121 0.79318 0.80733 1.20474 1.20898 1.20153 1.19768 0.88625 0.99409 1.06152 1.18969 0.86171 0.95323 1.06700 1.42955 1.03759 1.10613 1.63468 0.72449 0.87907 0.87493 0.88145 0.84374 0.84423 0.91681 0.95875 0.95643 0.95281 0.94844 0.91963 0.93081 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.51 71.24 0.75 -0.17 16 2 C 0.28 7.26 8.08 137.92 1.11 8.37 16 3 N -0.53 -18.36 11.27 -179.96 -2.03 -20.39 16 4 C 0.01 0.24 7.23 39.45 0.29 0.52 16 5 C -0.08 -2.96 10.05 22.25 0.22 -2.74 16 6 C -0.13 -5.28 8.90 22.02 0.20 -5.08 16 7 C -0.03 -1.44 4.73 -19.82 -0.09 -1.53 16 8 C 0.09 4.38 0.58 -53.68 -0.03 4.35 16 9 C -0.12 -5.51 8.08 71.98 0.58 -4.93 16 10 C -0.12 -5.78 6.90 71.98 0.50 -5.29 16 11 C -0.51 -27.17 7.63 25.60 0.20 -26.97 16 12 H 0.04 2.33 7.54 -2.91 -0.02 2.31 16 13 C 0.03 1.39 5.15 84.66 0.44 1.83 16 14 N -0.90 -48.85 9.35 21.45 0.20 -48.65 16 15 Si 0.94 42.69 29.54 68.60 2.03 44.72 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 C -0.12 -4.87 8.65 22.32 0.19 -4.68 16 20 C 0.04 1.40 7.31 38.86 0.28 1.69 16 21 N -0.59 -16.28 6.23 -179.23 -1.12 -17.39 16 22 H 0.43 8.53 8.96 -92.71 -0.83 7.70 16 23 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.14 4.42 8.06 -2.92 -0.02 4.39 16 27 H 0.14 5.07 5.84 -2.91 -0.02 5.06 16 28 H 0.06 3.36 6.06 -2.39 -0.01 3.35 16 29 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.02 1.15 7.49 -2.39 -0.02 1.13 16 31 H 0.03 1.31 7.58 -2.39 -0.02 1.29 16 32 H 0.03 1.38 7.42 -2.38 -0.02 1.36 16 33 H 0.06 3.20 6.08 -2.39 -0.01 3.18 16 34 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 35 H 0.12 4.74 7.63 -2.91 -0.02 4.72 16 Total: -1.00 -64.36 285.04 3.98 -60.37 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.27 Total: 15.96 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 4.63 Total: -34.62 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -2.94 Total: -86.43 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -64.36 3.98 -60.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260297395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.353 kcal (2) G-P(sol) polarization free energy of solvation -64.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds